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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066511 ID=TCONS_00066511|Name=TCONS_00066511|organism=Clytia hemisphaerica|type=transcript|length=3170bp
gcgcggcattggagagtgtgattaacgattaattgctctctacaggatgc
aattaacgattaattgctctctacaggatgcaattaacgattaattgctc
tctttgagggcgtgccaaataagaaaaaataacccatcgtgcgattatat
attaaattatattttattccAATATCGTAATTTTCTACTCACCATTTTCA
GTATTCAAGAATTTCGACGAATGGGATAGTTGTTTTCCGATCCTTATACT
CGAAGAAACGACAAACACTTCAGTTGTAAGCCTTCTCAGCCAAGATAGTG
GAATGGGTGAACTATACTCATCAGAAGAAAACatcaataataataacaat
aataatcaTAACTCGGAACACACTCTACAATCAAAGTTACCTCGACAGCC
CGGATTAACTCGGCTTTCTATACAAATTCATAAATTCGCTGTCAAAGATT
TGAAGAAAGTTTGTGATCCATACATCGCTATTTCCTTACGTGATCGTGAT
TCAGTGAATCTTGCGGATATCCAATACACAAAATCCTCCACCCGTACTCA
AGATTATCACGCAGAATTCAATAATTGCAATTACGAAGTACAGAGATATG
TAGAAAAAATACCGAAAGgAAGTTCAATATTCTTTGAATTGAGAAGTTCA
ACCGACAAGAAGACGAAATATTATTCTGTTCTAAAACGAGAACAATTTGC
AACTGGTCGAGGCTATCTAGAAATATATAAAGGCCCTGTCGATTATCACC
ACAAACAATTACGAAAGGTATCTCAAAAGAAGCCACTGTATTGTCACATT
AGTATGACTCTTCTCGACCAATAAAATTTGTGCTTGCTTTTGTTTTTAGA
ATCTGTAAATTTAGGctaatctttattttttattactgCTTGGAAACTTG
AAGACCTTTACCCTTTCTTCACGGAAACGTAAccgaaattttttataaaa
tcaaacAATACGTGATTTGATGTAGAGAATTCACCTCtttgaatttttct
gaaaatacaAACTGGGAATAGAAAAGTAATGCTCGctgtatttgaatttt
ttattaagTTTGTTGTCAATTctgataaatatttttcaaacttaccTCTA
CCTTTCTTACGTAagttagaatatttttttacaacGACTCAAGAGAGGTA
CGATGGTCTGGtgttttccaaatctttttcacattgtaatttttttataa
tttagtGTAAATAGATATATTCTTTCATTATTTAGGGTCCGATTTATACG
CGATAAAATAGAAACataaattattgaaaaagtttcaaatgagcaaatgt
aatatttttggaaaactaCCCTGAATCAGAAAGGTGTGATTACTCTGATT
TAATccgtttcttttttatttgaagtatTTTGAAAGATGAATCCCACGAA
ACCCACGAAACCAACTTCACATCGGGGAAACACCAGAATAATGAATTCTG
GTTATTCGGACGGCCGGCTACTAATAAAATAACCGaaaatgttatacatt
ttcATCGCATTTCTCATTCATTGGTTTTTGAAAGCTCATTGAGATTGAAC
CACTTGAATTGaatcaattaattttttccgttgaaaaattatttcataaa
aacGCGACTTATCTCCTAAAAGCAAGAAATGGAATTGAAGAAAATGTCCT
TAATCGAGACCAGACCAGGCCAGGCTATCAGCGGAAAGAATTCATGTTTT
TctataaaacatttaaaaagattttaagccTTAAGTTTTAATTGTGTGTG
AGTACTTTTGCACAAATTATCATCACTCtcaattatcttttttttttttt
tttacaaacacgAACAATATTCAAATGTAATAATCTATCTCtacaaaatt
tataaaacaaTTTAATTTAAAGTAGGATAGGGTTACTTTTTTCAGTCCAG
TTCACTTTTACAGTTTCTACTTGTAGCAACGGTTTTCTTTTCGAGAATTT
TGATGGACTCGACAAGCGTGAGGCTTTGTGCCTGTGTAGGTATCacaaat
caaaccaatcaaatcatCGCCCGCGCGGTCTTGAATTTGCCATGTGTGTT
GACCGTTCAACGTGACCCATGGAACAAAACCATGTTTAGGTGTCAAGTTA
TTGGTTTTGACAGCGAATTCATGCTCATACTTGTTGCCCATTGAAGATGT
AGCGCATAAAAGAATCTTATCAAAATCCACTTTAGTGGCACTGGCACATG
CACGGGCGTTGGCCATGTTGGGTCCACTTTCTTCAAGACAATGAATAAAA
GGCATGAAAGCAGCTTGATCGTGTAATAGATGAATAGCACATGTTTCCAC
CAAGTTCATCTGGCATTCAACTTCACCGTGTTGGCAATCAAACGCCCAGG
TACCGTTTGGTAGTTGTGTTTCGTGTGCATTTCCGTAAGGATACAAGCCA
ATTTGGATAATACCGGTCGAGTAAAGAGTTTGGTAAGCAGGCCAGATTTG
TTGTTTGATCATATCTCTGCATCCGCCGCATTGACTCTCATAATATAATT
CAAAGATAACGGGTTGTGCATCCGCAACTGTCTTTGAACCTTTCtgttgt
tgttctttttgaagtCTGCAATAAGCTTGGACGCCACATTGGATAGCTGT
TTCTTCGTTCTGACACCAATAAGATTCACCTTCGTGACATGGGTCTTGAA
TGCTGGCTGAATTGGCAACTGCCAAACAGATAAGCATAGAAACGTAGGAT
AACATAACCATTTTGTTCGACTCTGTGTTGTATATTCCACACAGAAAGTA
CGATGTCAAGGAATGCACTTTTTGCGTCTTTTTATAACATAGATTTGTTT
GACAATTCAAATCTCATGTTTCATGAACGTATATTGTTTTGGTAAGCATC
AGGAAAAACATGTTTTGACTTATCGTGAAACTCAAGATGAGTTATTGTGA
AACTGGAAGGCGAGAGGGTCTCACAATAGCTGAAAAGATGGAGGCAATAG
CTGAAAAGATGGAGGGCGTAAGGTTGCATATAAGGAACATATGTGTGACA
ACCAAACGTTTTGTTTGACCTTGAATTATATGATGCACTTTATCTTATGG
AAATGAGTCATAATTTTATATTCATAATTGTAATATTCAATATCATCTAC
CAGGCACATGTTAAACATATGACAGATACTAATATCATAGAAATCTTAAA
AGATCAGATTCGGATTTCGC Run BLAST on NCBI transcript from alignment at scaffold_456:423333..427827+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066511 ID=TCONS_00066511|Name=TCONS_00066511|organism=Clytia hemisphaerica|type=transcript|length=4495bp|location=Sequence derived from alignment at scaffold_456:423333..427827+ (Clytia hemisphaerica)
gcgcggcattggagagtgtgattaacgattaattgctctctacaggatgc
aattaacgattaattgctctctacaggatgcaattaacgattaattgctc
tctttgagggcgtgccaaataagaaaaaataacccatcgtgcgattatat
attaaattatattttattccAATATCGTAATTTTCTACTCACCATTTTCA
GTATTCAAGAATTTCGACGAATGGGATAGTTGTTTTCCGATCCTTATACT
CGAAGAAACGACAAACACTTCAGTTGTAAGGTAAATAAATGTCTTTTTAG
ACCTTTCATTGGTTGTTAACCTTCACTGAGTTGTAAAAAAACAGTTAGAA
TTTTCAATACCTTGAATTTTCATTCCTCTAAAGGTCTTTCTAAACTACGA
TCGGTGATGAAGATGTcgtatattttgaattttcatgtaAACTGAAAAGC
TCTTCTCTCAATTCTCCAGCCTTCTCAGCCAAGATAGTGGAATGGGTGAA
CTATACTCATCAGAAGAAAACatcaataataataacaataataatcaTAA
CTCGGAACACACTCTACAATCAAAGTTACCTCGACAGCCCGGATTAACTC
GGCTTTCTATACAAATTCATAAATTCGCTGTCAAAGATTTGAAGAAAGTT
TGTGATCCATACATCGCTATTTCCTTACGTGGTGAGTTTTTCCTCGGTGT
TGCCATCATTCTTGGCCCTTCTTGTGCATTCTTCTGTATACTGTTTACTA
AGAAAGGCTTGTCTATATTCAGGTGTCAAGCTCTAATGTTCTATCCATGG
TGTTTTAAGGTTGCTGAAAAGACTAACACTTTTAATGTGAAAACTAAACC
GCTCATTTGAATTACATACAGTTACCTGGTTTTTTAGCATATTAACTATT
AAGTTTCCACTTAAGTTTAGCAACAGATTCTCATTGATTTCTTACGTTTT
TATCTTTAGATCGTGATTCAGTGAATCTTGCGGATATCCAATACACAAAA
TCCTCCACCCGTACTCAAGATTATCACGCAGAATTCAATAATTGCAATTA
CGAAGTACAGAGATATGTAGAAAAAATACCGAAAGGTAAATAAATATTCA
TTGTTTTGAGACTATTTTCGATGGATAGATGGTCCACAGTCttccttttt
gatattttacttAAGAACTGGTAAGGGCCTATCATGATAAGGGTGAGCTT
tagagtttaaaaaatgttttaagaaCAAAACAAGTGAAAAGAACAATCCG
GTTCAATTTGATTAGCCTTCGATAACTTTTCATTTCCATCCCTAGCGAAA
AGCTatggaatgttttgaaattcaccTTTTCGGaggtttgaaatatttca
aaattcgccattccgtaatattttttattaattttattttgtttattttg
ttttttttgcaggAAGTTCAATATTCTTTGAATTGAGAAGTTCAACCGAC
AAGAAGACGAAATATTATTCTGTTCTAAAACGAGAACAATTTGCAACTGG
TCGAGGCTATCTAGAAATGTTAGGGTTTTGgaatcttctttttcattttt
aactgctttttaaacgttttaaacacccctatctcacagccccgatggaa
ctttcttcctcagtggggataaaaactcctcTTGAAATCTAaacggggat
agaaattctattgttccaaggttaaaaaaatccagtggggatggtttcgg
agtgcaatttttaaacattgactttccaatggggatgaaatcaaagtcaa
taccccagtggggctgaaatttcagggtatatCCCcatcggggacgaaat
ttttgcgaaattttccagtggggctggggtcccagagggtgtgtgacaca
ggggtgtttttaacGGCATGTCtcttcttcaaaatttatctCAACGGCCT
GTAGTtcgattaaaaagaaaatatttcttttcatgtttttgtacTGAAGT
ANATCTCAACGGCCTGTAGTtctattaaaaagaaaatatttcttttcatg
tttttgtacTGAAGTATTGATCAAACATTTCGTTTTTCTTAATCTTTAGA
TATAAAGGCCCTGTCGATTATCACCACAAACAATTACGAAAGGTATCTCA
AAAGAAGCCACTGTATTGTCACATTAGTATGACTCTTCTCGACCAATAAA
ATTTGTGCTTGCTTTTGTTTTTAGAATCTGTAAATTTAGGctaatcttta
ttttttattactgCTTGGAAACTTGAAGACCTTTACCCTTTCTTCACGGA
AACGTAAccgaaattttttataaaatcaaacAATACGTGATTTGATGTAG
AGAATTCACCTCtttgaatttttctgaaaatacaAACTGGGAATAGAAAA
GTAATGCTCGctgtatttgaattttttattaagTTTGTTGTCAATTctga
taaatatttttcaaacttaccTCTACCTTTCTTACGTAagttagaatatt
tttttacaacGACTCAAGAGAGGTACGATGGTCTGGtgttttccaaatct
ttttcacattgtaatttttttataatttagtGTAAATAGATATATTCTTT
CATTATTTAGGGTCCGATTTATACGCGATAAAATAGAAACataaattatt
gaaaaagtttcaaatgagcaaatgtaatatttttggaaaactaCCCTGAA
TCAGAAAGGTGTGATTACTCTGATTTAATccgtttcttttttatttgaag
tatTTTGAAAGATGAATCCCACGAAACCCACGAAACCAACTTCACATCGG
GGAAACACCAGAATAATGAATTCTGGTTATTCGGACGGCCGGCTACTAAT
AAAATAACCGaaaatgttatacattttcATCGCATTTCTCATTCATTGGT
TTTTGAAAGCTCATTGAGATTGAACCACTTGAATTGaatcaattaatttt
ttccgttgaaaaattatttcataaaaacGCGACTTATCTCCTAAAAGCAA
GAAATGGAATTGAAGAAAATGTCCTTAATCGAGACCAGACCAGGCCAGGC
TATCAGCGGAAAGAATTCATGTTTTTctataaaacatttaaaaagatttt
aagccTTAAGTTTTAATTGTGTGTGAGTACTTTTGCACAAATTATCATCA
CTCtcaattatcttttttttttttttttacaaacacgAACAATATTCAAA
TGTAATAATCTATCTCtacaaaatttataaaacaaTTTAATTTAAAGTAG
GATAGGGTTACTTTTTTCAGTCCAGTTCACTTTTACAGTTTCTACTTGTA
GCAACGGTTTTCTTTTCGAGAATTTTGATGGACTCGACAAGCGTGAGGCT
TTGTGCCTGTGTAGGTATCacaaatcaaaccaatcaaatcatCGCCCGCG
CGGTCTTGAATTTGCCATGTGTGTTGACCGTTCAACGTGACCCATGGAAC
AAAACCATGTTTAGGTGTCAAGTTATTGGTTTTGACAGCGAATTCATGCT
CATACTTGTTGCCCATTGAAGATGTAGCGCATAAAAGAATCTTATCAAAA
TCCACTTTAGTGGCACTGGCACATGCACGGGCGTTGGCCATGTTGGGTCC
ACTTTCTTCAAGACAATGAATAAAAGGCATGAAAGCAGCTTGATCGTGTA
ATAGATGAATAGCACATGTTTCCACCAAGTTCATCTGGCATTCAACTTCA
CCGTGTTGGCAATCAAACGCCCAGGTACCGTTTGGTAGTTGTGTTTCGTG
TGCATTTCCGTAAGGATACAAGCCAATTTGGATAATACCGGTCGAGTAAA
GAGTTTGGTAAGCAGGCCAGATTTGTTGTTTGATCATATCTCTGCATCCG
CCGCATTGACTCTCATAATATAATTCAAAGATAACGGGTTGTGCATCCGC
AACTGTCTTTGAACCTTTCtgttgttgttctttttgaagtCTGCAATAAG
CTTGGACGCCACATTGGATAGCTGTTTCTTCGTTCTGACACCAATAAGAT
TCACCTTCGTGACATGGGTCTTGAATGCTGGCTGAATTGGCAACTGCCAA
ACAGATAAGCATAGAAACGTAGGATAACATAACCATTTTGTTCGACTCTG
TGTTGTATATTCCACACAGAAAGTACGATGTCAAGGAATGCACTTTTTGC
GTCTTTTTATAACATAGATTTGTTTGACAATTCAAATCTCATGTTTCATG
AACGTATATTGTTTTGGTAAGCATCAGGAAAAACATGTTTTGACTTATCG
TGAAACTCAAGATGAGTTATTGTGAAACTGGAAGGCGAGAGGGTCTCACA
ATAGCTGAAAAGATGGAGGCAATAGCTGAAAAGATGGAGGGCGTAAGGTT
GCATATAAGGAACATATGTGTGACAACCAAACGTTTTGTTTGACCTTGAA
TTATATGATGCACTTTATCTTATGGAAATGAGTCATAATTTTATATTCAT
AATTGTAATATTCAATATCATCTACCAGGCACATGTTAAACATATGACAG
ATACTAATATCATAGAAATCTTAAAAGATCAGATTCGGATTTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066511-exon-scaffold_456-1491911889:423333..423612 | TCONS_00066511-exon-scaffold_456-1491911889:423333..423612 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1510915933:423333..423612 | TCONS_00066511-exon-scaffold_456-1510915933:423333..423612 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1575043694:423333..423612 | TCONS_00066511-exon-scaffold_456-1575043694:423333..423612 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1491911889:423802..424013 | TCONS_00066511-exon-scaffold_456-1491911889:423802..424013 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1510915933:423802..424013 | TCONS_00066511-exon-scaffold_456-1510915933:423802..424013 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1575043694:423802..424013 | TCONS_00066511-exon-scaffold_456-1575043694:423802..424013 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1491911889:424292..424417 | TCONS_00066511-exon-scaffold_456-1491911889:424292..424417 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1510915933:424292..424417 | TCONS_00066511-exon-scaffold_456-1510915933:424292..424417 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1575043694:424292..424417 | TCONS_00066511-exon-scaffold_456-1575043694:424292..424417 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1491911889:424745..424850 | TCONS_00066511-exon-scaffold_456-1491911889:424745..424850 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1510915933:424745..424850 | TCONS_00066511-exon-scaffold_456-1510915933:424745..424850 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1575043694:424745..424850 | TCONS_00066511-exon-scaffold_456-1575043694:424745..424850 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1491911889:425382..427827 | TCONS_00066511-exon-scaffold_456-1491911889:425382..427827 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1510915933:425382..427827 | TCONS_00066511-exon-scaffold_456-1510915933:425382..427827 | Clytia hemisphaerica | exon |
| TCONS_00066511-exon-scaffold_456-1575043694:425382..427827 | TCONS_00066511-exon-scaffold_456-1575043694:425382..427827 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:423333..427827 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00066511 vs. Swiss-Prot (Human)
Match: GILT (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3) HSP 1 Score: 125.561 bits (314), Expect = 2.682e-31 Identity = 74/210 (35.24%), Postives = 112/210 (53.33%), Query Frame = -1
Query: 1920 KGSKTVADAQPVIFELYYESQCGGCRDMIKQQIWPAYQTLYSTGIIQIGLYPYGNAHETQLPNGTWAFDCQHGEVECQMNLVETCAIHLLHDQAAFMPFIHCLEESGPNMANARACAS--ATKVDFDKILLCATSSMGNKYEHEFAVKTNNLTPKHGFVPWVTLNGQHTWQIQDRAGDDLIGLICDTYTGTKPHACRVHQNSRKENRCYK 2543
+G ++A V LYYE+ CGGCR + ++++P + L I+ + L PYGNA E + +G W F CQHGE EC+ N VE C + L + AF+ + C+EE + C A + D I+ CA G + H A +T+ L P H +VPWVT+NG+ ++D+ L+ L+C Y G KP C +S + + C+K
Sbjct: 51 RGPLKKSNAPLVNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNV-SGRWEFKCQHGEEECKFNKVEACVLDELDMELAFLTIV-CMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGK---PLEDQT--QLLTLVCQLYQGKKPDVCPSSTSSLR-SVCFK 250
The following BLAST results are available for this feature:
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