TCONS_00066497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066497
Unique NameTCONS_00066497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066497 ID=TCONS_00066497|Name=TCONS_00066497|organism=Clytia hemisphaerica|type=transcript|length=1402bp
ACTTTTcgaattcaaaacagaatttgtACACCGGAAACAAAAGATATTTT
AGGTCAGCCTTAGTCTGATATTTTCTTTATGTACCCCATGTGAAATACTC
TTACTGTGTTACTTTTTTAATCaacatttttctaattttaaatgCAAATA
AATTAGTTTAATGTCTAATGTCTAATTTTTGGTTTATATTTTGACAGATA
ATGATAAAATAAGTACACTGTGAACCATGGCAAGTGAAGGGGTAATGGCA
ACAAACGACGATGCGTCACTCTGTAAAAGATATGCCACCCATATGAAGTA
CTGGAAGGATGATTTCATTCAATATTTTGTACGGAATGTACCACCACGCA
AAGCTCCTGAAATCAACCGGGGTTATTATGTTCGACATTACAGTATCACA
TCAGTTGTTGAACAATTTTTCTCTATGGTCAGCAAAAACTGTCAAATTGT
GAACTTGGGATGTGGTTTCGATACTTTGTATTGGAACCTCCACCAAAAGG
ATATGTTGCCAACCAAAGGATTTTATGAAATTGATATGACACAAATAGTA
CAGAAGAAAATGCAATACATCAAAATGAGGCCACAACTACACCAATTATT
TAAAGGTGAAATGAAGATCACTTCTGATCAACTTCATACTCAAGACTATC
ATTTAATGTCGTGTGATTTGAAAAACATAGAAGAGTTAAAGAGCAAGCTA
TATGGAAATGGTCTTGATAAAATTATTCCAACGCTATTCATAGCAGAATG
TGTTTTTGTATACATTGAGAAGGATTGGGTCAGAGAGCTATCAACTTTTA
TCTATCAAGATTTTAAAGTATGCGTGCTTTATGATTACGATCCTGTTAAT
CTAAATGATCGGTTTGGTGAAGTCATGAAAGAGAATCTTAAAGGCAGAGA
CTGTTTGTTGCTTGGAGCACATGATgatatgaaatcaaaaatgagaagtt
ATCGTGGATTTCAAGATGTTACTACTCGACTTCTGCTCGGTATTTATAGA
AATGTACCCAAGGCTGAGAGAGGCAGAATTGAGAAAATCGAGTTTCTTGA
TGAGGTAGACTTACTTGAGGATTTACTCAAACATTATTCTGTGGTTTTAT
GTAGCAATGACCCTGATAATATTGGATTGAATGGAATTATTCTATGATTT
GATTCTTTGAGAATTAATGTAGtgctttcaaaaaattattttggtcttgt
aaattgcttttttttcatagaaaagtTATAATCCAAACAGTGTTGATCTG
TTGTAaaatgttaaacattttttagtATCTTTGCTCAGGTTAAATTTACC
TGAAAGTTTTTAACGATATTCAGAATATTTATGGTCGTGATTAATTGTGT
ctcttttttacattttggaaGCAAACAGTGTTTACTTATTATGGATTTCA
AC
Run BLAST on NCBI

transcript from alignment at scaffold_456:343786..345187+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066497 ID=TCONS_00066497|Name=TCONS_00066497|organism=Clytia hemisphaerica|type=transcript|length=1402bp|location=Sequence derived from alignment at scaffold_456:343786..345187+ (Clytia hemisphaerica)
ACTTTTcgaattcaaaacagaatttgtACACCGGAAACAAAAGATATTTT
AGGTCAGCCTTAGTCTGATATTTTCTTTATGTACCCCATGTGAAATACTC
TTACTGTGTTACTTTTTTAATCaacatttttctaattttaaatgCAAATA
AATTAGTTTAATGTCTAATGTCTAATTTTTGGTTTATATTTTGACAGATA
ATGATAAAATAAGTACACTGTGAACCATGGCAAGTGAAGGGGTAATGGCA
ACAAACGACGATGCGTCACTCTGTAAAAGATATGCCACCCATATGAAGTA
CTGGAAGGATGATTTCATTCAATATTTTGTACGGAATGTACCACCACGCA
AAGCTCCTGAAATCAACCGGGGTTATTATGTTCGACATTACAGTATCACA
TCAGTTGTTGAACAATTTTTCTCTATGGTCAGCAAAAACTGTCAAATTGT
GAACTTGGGATGTGGTTTCGATACTTTGTATTGGAACCTCCACCAAAAGG
ATATGTTGCCAACCAAAGGATTTTATGAAATTGATATGACACAAATAGTA
CAGAAGAAAATGCAATACATCAAAATGAGGCCACAACTACACCAATTATT
TAAAGGTGAAATGAAGATCACTTCTGATCAACTTCATACTCAAGACTATC
ATTTAATGTCGTGTGATTTGAAAAACATAGAAGAGTTAAAGAGCAAGCTA
TATGGAAATGGTCTTGATAAAATTATTCCAACGCTATTCATAGCAGAATG
TGTTTTTGTATACATTGAGAAGGATTGGGTCAGAGAGCTATCAACTTTTA
TCTATCAAGATTTTAAAGTATGCGTGCTTTATGATTACGATCCTGTTAAT
CTAAATGATCGGTTTGGTGAAGTCATGAAAGAGAATCTTAAAGGCAGAGA
CTGTTTGTTGCTTGGAGCACATGATgatatgaaatcaaaaatgagaagtt
ATCGTGGATTTCAAGATGTTACTACTCGACTTCTGCTCGGTATTTATAGA
AATGTACCCAAGGCTGAGAGAGGCAGAATTGAGAAAATCGAGTTTCTTGA
TGAGGTAGACTTACTTGAGGATTTACTCAAACATTATTCTGTGGTTTTAT
GTAGCAATGACCCTGATAATATTGGATTGAATGGAATTATTCTATGATTT
GATTCTTTGAGAATTAATGTAGtgctttcaaaaaattattttggtcttgt
aaattgcttttttttcatagaaaagtTATAATCCAAACAGTGTTGATCTG
TTGTAaaatgttaaacattttttagtATCTTTGCTCAGGTTAAATTTACC
TGAAAGTTTTTAACGATATTCAGAATATTTATGGTCGTGATTAATTGTGT
ctcttttttacattttggaaGCAAACAGTGTTTACTTATTATGGATTTCA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041608XLOC_041608Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066497-exon-scaffold_456-1491911889:343786..345187TCONS_00066497-exon-scaffold_456-1491911889:343786..345187Clytia hemisphaericaexon
TCONS_00066497-exon-scaffold_456-1510915933:343786..345187TCONS_00066497-exon-scaffold_456-1510915933:343786..345187Clytia hemisphaericaexon
TCONS_00066497-exon-scaffold_456-1575043694:343786..345187TCONS_00066497-exon-scaffold_456-1575043694:343786..345187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:343786..345187 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
80.4891	74.8123	37.978	31.065	14.939	10.9365	13.5999	12.6101	7.45128	6.20271	9.61795	5.63374	5.34978	6.34894	7.9374	7.55845	8.95744	10.371	6.71516	2.69668	11.7134	9.47158	72.3664	56.0409	5.72985	8.71553	12.5772	13.6932	30.3939	37.3947
Blast
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BLAST of TCONS_00066497 vs. Swiss-Prot (Human)
Match: LCMT1 (Leucine carboxyl methyltransferase 1 OS=Homo sapiens GN=LCMT1 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 6.982e-62
Identity = 116/311 (37.30%), Postives = 185/311 (59.49%), Query Frame = 2 
Query:  236 EGVMATNDDASLCKRYATHMKYWKDDFIQYFVRNVPPRKAPEINRGYYVRHYSITSVVEQFFSMVSKNCQIVNLGCGFDTLYWNLHQKDMLPTKGFYEIDMTQIVQKKMQYIKMRPQLHQLF-----KGEMKITSDQLHTQDYHLMSCDLKNIEELKSKLYGNGLDKIIPTLFIAECVFVYIEKDWVRELSTFIYQDFKVCVLYDYDPVNLNDRFGEVMKENLKGRDCLLLGAH-----DDMKSKMRSYRGFQDVTTRLLLGIYRNVPKAERGRIEKIXXXXXXXXXXXXXKHYSVVLCSNDPDNIGLNGI 1138
            EGV  T +DASLCKR+A  + YW D +IQ+FVR    RKAPEINRGY+ R + ++ +++ F      +CQIVNLG G DT +W L  +D+LP+K ++E+D   IV +K+  IK +P L         +  +++    L ++ Y ++  DL+++ EL+ KL    ++  +PTL IAECV VY+  +    L  +    F+  +  +Y+ VN+ DRFG++M ENL+ R C L G       +  K ++ S  G++  +   ++ +Y  +P+AE  RIE +EFLDE++LLE L++HY +   +   + +GL  I
Sbjct:   24 EGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSK-YFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLS-NGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEI 332
The following BLAST results are available for this feature:
BLAST of TCONS_00066497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LCMT16.982e-6237.30Leucine carboxyl methyltransferase 1 OS=Homo sapie... [more]
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