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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066491 ID=TCONS_00066491|Name=TCONS_00066491|organism=Clytia hemisphaerica|type=transcript|length=2425bp
gaattttttacTGAGGCTTTTTCTGATGAAGGAGTGGAATGTTTGAAAAC
ATACCAACATATGAAGAGCGTACTTCAGTCTAAAAGAAGTCAAAAAAGAA
ccgtaaaataagaataacaaAGGCTCTACTAAGGTTTTCAGGTTCTTATA
AAGATAAGTAGATTTAAAACAGTTGACTTAAAATGACTGGGTGACTTGGC
TTTCACTTTACTTAAATGGAATTTAATttgcaaaattgtttttaaagtgA
CACAGAGGGATTTTCAAATGCATAGCAATTGAGGAACTGGTTTTTGAACA
CTGATCAATCGATATGGCTGAAATAAAGAAAGTAGGAATTTTCGCAGCAT
GTGTCATTGTATCAGTTATCCTTTCAGCTTCAGCTGGCGGTGTTGGCTGG
ATGGAAGGAGTTAATGgatCGGATACATTGCACGAGTATGGTTTATTTCG
ATTATGTTATACAAATGCAGTTACCACTGGCAACGTCAACAAATATTGTG
GAGAATACAACCGTGTTTCGAGCAGATGGCGTGCTGCTCAAGCCCTAATG
TTATTAGCCGTGTTTCTAAGCATAGTAGCCTGTTTCCTGGCACTTGTGCA
TCTACTGAAAGATAAAATCAACAGCAAATTGATTTCTCTGTTTCTAGTGA
TGACGTGTATCTCAGCATTGTTAGTATTAGCCATTATCACAGATTTGAAA
GAAGAAGAGTTTGCAGGGCGCTCTTATAGTTGGGCGTATGGCTTATCATG
GGCGGGAGCTTTTACCGCCCTCTTTTTTGGTATCTTTATATTTGGACAAT
ATCCGTAAAGATTGAATATATtggaaattaattaaaaatctcTGGTAGTT
GGGAGTTATGGGTGTTTGGTGGACGTTATTTTGGCCATCATTAATGCGTA
CCTACTGATGAGGTATAAGCGAAAGAGATTCAATttgtcttttttgaaac
ataTCAATAAAATCAGAAATCAGTTTTACGGTTTTACCAATCAAAGAATT
AACTTTTACAGCTTttatataaataattttttataaaaatatttaaccct
attcgtactggggggctgtttctgttcgcgGGGATGAAACTAATATTAAT
agctgaaataatagagctttcggcatgaaattttctgcaaattcctaact
tttatttagcctaaaaataaaaaaaatttgacacctaaagattttcacac
cttgagcatgatgacatttctgacagtaaggtgttgcaaaaagttgaaac
attTCCAATATACAATATATTAATTGTTTATGTCATATGTATCGGGTTtc
aaaccgtaatttattgaatatttaggataagaTAAGTATTTCAAACTCAG
GGAACTTTTTTCtgaagcctttgttagaatacaagagcaaaggaaatttt
cggtttaactcactttgggcatgatgagtgacgccatcaaaaaaattatt
taccaAGAGTTACTTTATATGACAAGGAGcctgtgtgccaaatttcatcc
aaaaagacccaagaggtcaaaagttaaggggtggtacaggaacagccccc
ctagttttgaacccTAAAAGCTAGGGTTAAAGATGTAAAGACAACTGAAT
ATGTACAGAAGATTAGTTTAGATGCTGAGAACTAGCTCATTTAATTTTGT
AAGCTCCtcaaatttttctatttcttttcttttggagcaaaatttataaa
tcaaaaaagtCAATGCTTCCATTTTTCTACTACAACCTTTTCTTTTGCTA
TCAGCAGACTGTCAGAGTGCTTCTGAGTGAACATGATTTTGTGCCGGTGT
TTTAGAATTGATATTTTGAAAGATAACCTACCGGCCGGTTGATTACCTAC
TTAGCCGCCAGTACACTTTATTTCGCCGGTACTTCAGTATTTGGcgatta
ttgttattattattccACTATCAAGTTCTATTTATCGATACATCAGCACC
ATGTACAGTGGACACTCCGTTATTCTAAGGGGaataagaatttacttcga
ataaccgggagtccGAATAACTGAAAATTCGTTTTCCCGCCAAATTTTCG
ACTCAAACTTGATGGGATGGACTTATCTGAATCAATAGAAGCATTTTCGT
GGTGAGCGCCCGTTGAGCGCAATTGCCAAGCAGGGGCTATGTAGCTTCAC
GATACTGGACTTTCTGCTGATAAATGTTTGTTGTCAGTGTTTCTAGTTTT
AATTTGACGCGTGTATCAAGCGCAGACTGCTGCTATACATGTTTTTGTGC
GAAAATATAATTAACTCTTTTAATTGTGTATTTAAGACGTTTATTTTAAA
GAAAtcgttttgtttaaaattttttgtctcttatgttaaaaaatcaatta
attaaACTTGTCATAGTTTACCatcgttttttataagtttcccatttccg
cactaagattcttgtcacttttccg Run BLAST on NCBI protein sequence of TCONS_00066491-protein >TCONS_00066491-protein ID=TCONS_00066491-protein|Name=TCONS_00066491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MAEIKKVGIFAACVIVSVILSASAGGVGWMEGVNGSDTLHEYGLFRLCYT
NAVTTGNVNKYCGEYNRVSSRWRAAQALMLLAVFLSIVACFLALVHLLKD
KINSKLISLFLVMTCISALLVLAIITDLKEEEFAGRSYSWAYGLSWAGAF
TALFFGIFIFGQYP Run BLAST on NCBI transcript from alignment at scaffold_456:144304..149281+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066491 ID=TCONS_00066491|Name=TCONS_00066491|organism=Clytia hemisphaerica|type=transcript|length=4978bp|location=Sequence derived from alignment at scaffold_456:144304..149281+ (Clytia hemisphaerica)
gaattttttacTGAGGCTTTTTCTGATGAAGGAGTGGAATGTTTGAAAAC
ATACCAACATATGAAGAGCGTACTTCAGTCTAAAAGAAGTCAAAAAAGAA
ccgtaaaataagaataacaaAGGCTCTACTAAGGTTTTCAGGTTCTTATA
AAGATAAGTAGATTTAAAACAGTTGACTTAAAATGACTGGGTGACTTGGC
TTTCACTTTACTTAAATGGAATTTAATttgcaaaattgtttttaaagtgA
CACAGAGGGATTTTCAAATGCATAGCAATTGAGGAACTGGTTTTTGGTAA
GTATTTTTGTAAAAGTATAATGTATCTTTAGTGAACCtatgaaagtttta
aaaacacccccttctcacagacccagtagggcTCCCTCTAGACAGGAGAG
CcttcctgtatttttataatccgGAGTATACAGAacgggtatgacctgtg
aggcagatttctgcctgcctcaaaaaatttacagttggaaattcgaattt
agcacTGTCCTCACTTATTAaactaaaaaccaaatttcggaacttgcgct
ttctctaagaaagtgcccagtaaaagaataacaaaatttgattggctatg
ttttcgaGCGTTATTAGGATCTTGGAatttcaaactctcagcccatacca
tgctatatattttcaccatcagtatatagaataagaaatcatagcatgga
tctccaggctagacTCCCTCCAGCTACAAAAATTGCCCAAAATATCGTTA
ATCCCAACGAGCCTCAGTTCGTAAAATCTTACcgtgtctgtgagaagggg
gtgttttgaAGCTCACTAATTTAGTCAAGCTCCTTAATAATGTTATTTCA
ATGAAAAGGATTAACTTGTTGTTTTGTCTACTTTTTTTCACAAGATTCCC
GAAACCTTCATCCTTAGAACGGACGCCAAAATTGCCAAAGATCAAAATCT
TAACCCTTTAGAATAATTAAtaaagcaaaatttaaaaagatctCTTTTAA
CTTTAAGCCCTCATTCTCATACTCTTTTTATGCAAACTCGGGTGTAAACT
ACCCCCAACGGGAtggggttacttaggcaaaatgggtgtcgggtatatgt
gagccataagggtcccatTTTTAAACcctcaaagtcactctaagggTTAC
ACAGAAAACCAATTCACTCTTTGAAAGGgtccaaaattcacgaaaatcga
aattttccgCTCTCGAGGGTcgtaatttcaaaaatttggaccaaaCTTGA
GTGATCAACAAAAAGCGAAAAAGTCTTTTCTCGATTCTCGTTTTTGGCTG
gaacatacccgtcaccttgcAAGCTTAGTACCTTCCGGaaaaaaaccata
aaaaacaACCTATGTCATTTCGAATACATAAGAAAAGTCACCCTTTCACC
CGAATCCACTTGGTACCACACCCACTTATTGTTTACCCTGATCATAAACA
TTATCAGAATTATAAACAATTGAACTAAGGGAATGGGTTCGAGTTTGTTC
ACCCTAAGGATACCCCATGGTCTGACCAGGTGTGAATTTTTTGGCCAGTG
GTGATTAAATAAAGGAGCTGAATGTCAACATGGGGTTAGAAAACGGCATG
TTTTTTTAGGTGGGGAATTGAAGCTCAAGATAAGAGTGGGGACAAGTGAA
GTCTGACTTAcataagtctgcgaccgcagtcggaggcgacccgaaggctc
ctctttcgatagctatctacccgaaggtagaggagggcgccactctttct
ccctggattgctccgcTTAACCTTGGTCCTtcttttaattgctgagcatc
aagcaaagaggcatcaagtaccattttggaaatctttggtatgacccggc
tgggggttgaacccacaaccgtagccggatgctctaccactgcactacgg
tcgcttcaGACCTGCAAAGGTATACGCCCTTTACAGACCTGTAAAGGTAT
ACGCCCAATAAGAAACCTGCATGACGAGGATGAGCAGAAGAGTAGTCTAG
ACAATCGACATAAGAGTTCAGGATCagggttttttttttatcttttccaa
CAGGGGTTTCACCAAAAATATACATAAAgtattttacttttctttctttt
tttctttcttcatctTTTAGAACACTGATCAATCGATATGGCTGAAATAA
AGAAAGTAGGAATTTTCGCAGCATGTGTCATTGTATCAGTTATCCTTTCA
GCTTCAGCTGGCGGTGTTGGCTGGATGGAAGGAGTTAATGGTAAGTGTAA
CTAAAGCTTTATGAACTATCGACAAATTTAGCCACCCTACGTTGATAATG
TGCATCTGGTTTTACTTTTTAGTAGCTAATCGTAAGTAGGGGTCAGTGGG
TCagtgtttcttttttatttttcggcTAAAAAAAACCCACCTGTTTAAGC
TTTCAACTCAAAATCCCAACCTTTCCATGTTACTATAACCCTTTCCGTTT
AAGTTTTAAGCAGTAAATTAACAAGTATTAAGTGTAGTAAAGCATTTGTT
CTTGATGATTAGTATTTTCACCACTACCCCTTTCCTCTGCTATCTATGAT
ACCCTTCCTGNAACAAGTATTAAGTGTAGTAAAGCATTTGTTCTTGATGA
TTAGTATTTTCACCACTACCCCTTTCCTCTGCTATCTATGATACCCTTCC
TGTTCCAATTTTTACCTACCTAATACCCCTAATTCTACACGAGACTTGTT
TAAAAAAACTGTggtaaaacatttgaaaataaatttgatacccctGTTTC
AGTAACCCGATGGGAAATTATAGCCAATCGGGAATAGACAATTTTCTCAC
TGGAACACCTGGGGTTACCGGGTCTGTGACGAGATGTAATACAGGGTGTA
ATATTGACGTACTGTTGAAATACGTCAGGTCTTCGGTAGGCAAATCCGAA
CTCAGCTTGTACCCAAAATCTGAGGCTAATCTTGATATTgaccttttgtt
tttctttgccacttttcaggatCGGATACATTGCACGAGTATGGTTTATT
TCGATTATGTTATACAAATGCAGTTACCACTGGCAACGTCAACAAATATT
GTGGAGAATACAACCGTGTTTCGAGCAGATGGCGTGCTGCTCAAGCCCTA
ATGTTATTAGCCGTGTTTCTAAGCATAGTAGCCTGTTTCCTGGCACTTGT
GCATCTACTGAAAGATAAAATCAACAGCAAATTGATTTCTCTGTTTCTAG
TGATGACGTGTATCTCAGCATTGTTAGTATTAGCCATTATCACAGATTTG
AAAGAAGAAGAGTTTGCAGGGCGCTCTTATAGTTGGGCGTATGGCTTATC
ATGGGCGGGAGCTTTTACCGCCCTCTTTTTTGGTATCTTTATATTTGGAC
AATATCCGTAAAGATTGAATATATtggaaattaattaaaaatctcTGGTA
GTTGGGAGTTATGGGTGTTTGGTGGACGTTATTTTGGCCATCATTAATGC
GTACCTACTGATGAGGTATAAGCGAAAGAGATTCAATttgtcttttttga
aacataTCAATAAAATCAGAAATCAGTTTTACGGTTTTACCAATCAAAGA
ATTAACTTTTACAGCTTttatataaataattttttataaaaatatttaac
cctattcgtactggggggctgtttctgttcgcgGGGATGAAACTAATATT
AATagctgaaataatagagctttcggcatgaaattttctgcaaattccta
acttttatttagcctaaaaataaaaaaaatttgacacctaaagattttca
caccttgagcatgatgacatttctgacagtaaggtgttgcaaaaagttga
aacattTCCAATATACAATATATTAATTGTTTATGTCATATGTATCGGGT
TtcaaaccgtaatttattgaatatttaggataagaTAAGTATTTCAAACT
CAGGGAACTTTTTTCtgaagcctttgttagaatacaagagcaaaggaaat
tttcggtttaactcactttgggcatgatgagtgacgccatcaaaaaaatt
atttaccaAGAGTTACTTTATATGACAAGGAGcctgtgtgccaaatttca
tccaaaaagacccaagaggtcaaaagttaaggggtggtacaggaacagcc
cccctagttttgaacccTAAAAGCTAGGGTTAAAGATGTAAAGACAACTG
AATATGTACAGAAGATTAGTTTAGATGCTGAGAACTAGCTCATTTAATTT
TGTAAGCTCCtcaaatttttctatttcttttcttttggagcaaaatttat
aaatcaaaaaagtCAATGCTTCCATTTTTCTACTACAACCTTTTCTTTTG
CTATCAGCAGACTGTCAGAGTGCTTCTGAGTGAACATGATTTTGTGCCGG
TGTTTTAGAATTGATATTTTGAAAGATAACCTACCGGCCGGTTGATTACC
TACTTAGCCGCCAGTACACTTTATTTCGCCGGTACTTCAGTATTTGGcga
ttattgttattattattccACTATCAAGTTCTATTTATCGATACATCAGC
ACCATGTACAGTGGACACTCCGTTATTCTAAGGGGaataagaatttactt
cgaataaccgggagtccGAATAACTGAAAATTCGTTTTCCCGCCAAATTT
TCGACTCAAACTTGATGGGATGGACTTATCTGAATCAATAGAAGCATTTT
CGTGGTGAGCGCCCGTTGAGCGCAATTGCCAAGCAGGGGCTATGTAGCTT
CACGATACTGGACTTTCTGCTGATAAATGTTTGTTGTCAGTGTTTCTAGT
TTTAATTTGACGCGTGTATCAAGCGCAGACTGCTGCTATACATGTTTTTG
TGCGAAAATATAATTAACTCTTTTAATTGTGTATTTAAGACGTTTATTTT
AAAGAAAtcgttttgtttaaaattttttgtctcttatgttaaaaaatcaa
ttaattaaACTTGTCATAGTTTACCatcgttttttataagtttcccattt
ccgcactaagattcttgtcacttttccg Coding sequence (CDS) from alignment at scaffold_456:144304..149281+ >TCONS_00066491 ID=TCONS_00066491|Name=TCONS_00066491|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_456:144304..149281+ (Clytia hemisphaerica)
ATGGCTGAAATAAAGAAAGTAGGAATTTTCGCAGCATGTGTCATTGTATC
AGTTATCCTTTCAGCTTCAGCTGGCGGTGTTGGCTGGATGGAAGGAGTTA
ATGgatCGGATACATTGCACGAGTATGGTTTATTTCGATTATGTTATACA
AATGCAGTTACCACTGGCAACGTCAACAAATATTGTGGAGAATACAACCG
TGTTTCGAGCAGATGGCGTGCTGCTCAAGCCCTAATGTTATTAGCCGTGT
TTCTAAGCATAGTAGCCTGTTTCCTGGCACTTGTGCATCTACTGAAAGAT
AAAATCAACAGCAAATTGATTTCTCTGTTTCTAGTGATGACGTGTATCTC
AGCATTGTTAGTATTAGCCATTATCACAGATTTGAAAGAAGAAGAGTTTG
CAGGGCGCTCTTATAGTTGGGCGTATGGCTTATCATGGGCGGGAGCTTTT
ACCGCCCTCTTTTTTGGTATCTTTATATTTGGACAATATCCGTAAATGGC
TGAAATAAAGAAAGTAGGAATTTTCGCAGCATGTGTCATTGTATCAGTTA
TCCTTTCAGCTTCAGCTGGCGGTGTTGGCTGGATGGAAGGAGTTAATGga
tCGGATACATTGCACGAGTATGGTTTATTTCGATTATGTTATACAAATGC
AGTTACCACTGGCAACGTCAACAAATATTGTGGAGAATACAACCGTGTTT
CGAGCAGATGGCGTGCTGCTCAAGCCCTAATGTTATTAGCCGTGTTTCTA
AGCATAGTAGCCTGTTTCCTGGCACTTGTGCATCTACTGAAAGATAAAAT
CAACAGCAAATTGATTTCTCTGTTTCTAGTGATGACGTGTATCTCAGCAT
TGTTAGTATTAGCCATTATCACAGATTTGAAAGAAGAAGAGTTTGCAGGG
CGCTCTTATAGTTGGGCGTATGGCTTATCATGGGCGGGAGCTTTTACCGC
CCTCTTTTTTGGTATCTTTATATTTGGACAATATCCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066491-exon-scaffold_456-1491911889:144304..144599 | TCONS_00066491-exon-scaffold_456-1491911889:144304..144599 | Clytia hemisphaerica | exon |
| TCONS_00066491-exon-scaffold_456-1510915933:144304..144599 | TCONS_00066491-exon-scaffold_456-1510915933:144304..144599 | Clytia hemisphaerica | exon |
| TCONS_00066491-exon-scaffold_456-1575043694:144304..144599 | TCONS_00066491-exon-scaffold_456-1575043694:144304..144599 | Clytia hemisphaerica | exon |
| TCONS_00066491-exon-scaffold_456-1491911889:146424..146543 | TCONS_00066491-exon-scaffold_456-1491911889:146424..146543 | Clytia hemisphaerica | exon |
| TCONS_00066491-exon-scaffold_456-1510915933:146424..146543 | TCONS_00066491-exon-scaffold_456-1510915933:146424..146543 | Clytia hemisphaerica | exon |
| TCONS_00066491-exon-scaffold_456-1575043694:146424..146543 | TCONS_00066491-exon-scaffold_456-1575043694:146424..146543 | Clytia hemisphaerica | exon |
| TCONS_00066491-exon-scaffold_456-1491911889:147273..149281 | TCONS_00066491-exon-scaffold_456-1491911889:147273..149281 | Clytia hemisphaerica | exon |
| TCONS_00066491-exon-scaffold_456-1510915933:147273..149281 | TCONS_00066491-exon-scaffold_456-1510915933:147273..149281 | Clytia hemisphaerica | exon |
| TCONS_00066491-exon-scaffold_456-1575043694:147273..149281 | TCONS_00066491-exon-scaffold_456-1575043694:147273..149281 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:144304..149281 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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