TCONS_00066489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066489
Unique NameTCONS_00066489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066489 ID=TCONS_00066489|Name=TCONS_00066489|organism=Clytia hemisphaerica|type=transcript|length=426bp
tgaaatttactttttttattcattacaaaagttAGCCGATAATTTACAAT
AttcctttaaaaaataataaattgtttAAACTGTTTTTGTTCACCCAGAG
GTAAAAGGTCAGGGCCAAATTTTAAAACAGGGCAATGTCAATCATCGAAA
TGTTAATAAACCCCTAAGATTTTCTTAGGATTAGTAGAgccaaaaatata
tattcttgGTACTGGCTGGCCAGTTCCAGTTCATCATTGACTtagtaaat
gaaaaaatttaaaataatataCCTAGCTATATTATATAAAGATGAATCAG
GAGCAATCATTATAATCAGCATAGGCTAGAATAAAAAAActtgaacaaaa
acaaaaacactaGAAAAGAAAGCTACTAAAGATCACAAAAGCCAACTTTA
CCAGAGACTTATGCAGTAAAATGGCG
Run BLAST on NCBI

transcript from alignment at scaffold_455:556569..556994

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066489 ID=TCONS_00066489|Name=TCONS_00066489|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at scaffold_455:556569..556994 (Clytia hemisphaerica)
CGCCATTTTACTGCATAAGTCTCTGGTAAAGTTGGCTTTTGTGATCTTTA
GTAGCTTTCTTTTCtagtgtttttgtttttgttcaagTTTTTTTATTCTA
GCCTATGCTGATTATAATGATTGCTCCTGATTCATCTTTATATAATATAG
CTAGGtatattattttaaattttttcatttactaAGTCAATGATGAACTG
GAACTGGCCAGCCAGTACcaagaatatatatttttggcTCTACTAATCCT
AAGAAAATCTTAGGGGTTTATTAACATTTCGATGATTGACATTGCCCTGT
TTTAAAATTTGGCCCTGACCTTTTACCTCTGGGTGAACAAAAACAGTTTa
aacaatttattattttttaaaggaaTATTGTAAATTATCGGCTaactttt
gtaatgaataaaaaaagtaaatttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041602XLOC_041602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066489-exon-scaffold_455-1491911889:556569..556994TCONS_00066489-exon-scaffold_455-1491911889:556569..556994Clytia hemisphaericaexon
TCONS_00066489-exon-scaffold_455-1510915933:556569..556994TCONS_00066489-exon-scaffold_455-1510915933:556569..556994Clytia hemisphaericaexon
TCONS_00066489-exon-scaffold_455-1575043694:556569..556994TCONS_00066489-exon-scaffold_455-1575043694:556569..556994Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:556569..556994 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.6031	25.5089	126.803	139.632	22.7092	22.8234	33.0006	48.0147	42.4336	44.8815	38.9252	24.6079	35.0121	27.8914	24.2302	29.9878	30.6832	34.72	25.7217	45.8298	43.3121	37.2406	45.552	42.9472	20.3619	28.5121	132.939	141.158	145.534	124.796
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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