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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066484 ID=TCONS_00066484|Name=TCONS_00066484|organism=Clytia hemisphaerica|type=transcript|length=1545bp
CTCTCAATAATATAATTCCAACGATAATTGTGTAGGAAACTGTAAACGAA
ATCATgcgaaaatgacattttaagaTGTTTGGCGCACCATAGTAACTGAG
AAACAGTAAAACAAAATTTAGAGCAATGATGATTAAATGAGCATACGTCA
TGCTGACATCAGCAGCTTTCATCATAGGGGTTGCACGGTACTTGAAAAAC
TCCACAAACACGAAAACACATGAACACAATCCAAAAGAAGTCAGTATGGT
AGCGAATACCACAAATGGTGATTTTAAAGAATGCGTTCTTGAAATGTAAG
GGTCATAACAAGAATCTCGTTTTTCGGACGAAAGATAATCATGTGGACAT
TTATTGCAAGTCGTATTTCCTTGATGCGGTTTATAGAATCCTTGTGCACA
AAGTTGACACGTCCAACGGTATGTGGTATCCCAATCCGTAGTATTATCAG
CCAACTTGGTGTAAAGATATTCATTTCCTGGTTGACAGACAACTTGAGGG
CAGATATTTTCTTTACTATACTTTCCGATTTGTTCAACAATATACTGTGA
TGGTGTGTATAATAGATATTTCAGAATTGACTTGCCCTTTACTGCTACTT
TCTGTCCGACAGATACCCTATGATAAACTGTCCGTGAGAAAAGACTCACG
ATCCCTAATTTCTGAACTCCTATTAACTTGGCTGGAAAAATCTTCTCCAA
AAAGTctttcaaattttggattttatttttaatggtTAGTTCGTCTTTTA
TAAAAGCCGTaatcaaattaatttctttGAAAAGCCTTGAAAAGTAATCA
AGTTCTGATAAGGAGTTGGTAAGATTTGATCTCATTATAAAGTTTGTTAA
ACCTTTCATATTCGAAGAATACTTCATTATAGCATCATCTCTGAAAGAAA
TGACATTCCCAAGCTCAGAAGAGATGTTTTTACTGTAGTTTTCATTCACA
AACCAAGTTTGATTTGAAGGACCATAGTTGTTAAGAAGCcttgtttgttt
atcttcatCACCAAGTAAAATGATCAAGCCATTTTGATCATCTTGACGGA
GTTTTTGAATAACATCTTGTACATTGTCTTCTTTGTTTATAATTTCGATG
TTCAAACAAATTTGATGATTAAGAAGTATGTTACGATACAGTTCGAAATG
ATAAGGattttttcttagcaaaacCATTGTCACGTATTTACAATTTAGCC
CCTGTAGCATGGCTTTGAAATATCTTCCAAAATTCTTGATACTAGCATCA
GATATCCATTGGGAAGACAGCAAATACTCATTGTAGTGGAGGATTATACT
CTCTCTAAGATTCATAATCAAAATGTTAGTCTGGCTTAAAACTTCAACCA
GTAGCTGAAACTGTTGTCTGTTTAAATAAACTAAAAggaccaaaattttt
gattcataTTTCCAGTCTGGTACTGGGTAACCTACTTTGGAAGATGGATT
TTTTAGGACGGTGAATGTGTCATTGAGCAACAAATCAACCAGGAGATCCA
ATAACACATCATTGCTATTACAAACATCATAATGCTGATATTGAA Run BLAST on NCBI protein sequence of TCONS_00066484-protein >TCONS_00066484-protein ID=TCONS_00066484-protein|Name=TCONS_00066484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
QYQHYDVCNSNDVLLDLLVDLLLNDTFTVLKNPSSKVGYPVPDWKYESKI
LVLLVYLNRQQFQLLVEVLSQTNILIMNLRESIILHYNEYLLSSQWISDA
SIKNFGRYFKAMLQGLNCKYVTMVLLRKNPYHFELYRNILLNHQICLNIE
IINKEDNVQDVIQKLRQDDQNGLIILLGDEDKQTRLLNNYGPSNQTWFVN
ENYSKNISSELGNVISFRDDAIMKYSSNMKGLTNFIMRSNLTNSLSELDY
FSRLFKEINLITAFIKDELTIKNKIQNLKDFLEKIFPAKLIGVQKLGIVS
LFSRTVYHRVSVGQKVAVKGKSILKYLLYTPSQYIVEQIGKYSKENICPQ
VVCQPGNEYLYTKLADNTTDWDTTYRWTCQLCAQGFYKPHQGNTTCNKCP
HDYLSSEKRDSCYDPYISRTHSLKSPFVVFATILTSFGLCSCVFVFVEFF
KYRATPMMKAADVSMTYAHLIIIALNFVLLFLSYYGAPNILKCHFRMISF
TVSYTIIVGIILLR Run BLAST on NCBI transcript from alignment at scaffold_455:407732..409276 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066484 ID=TCONS_00066484|Name=TCONS_00066484|organism=Clytia hemisphaerica|type=transcript|length=1545bp|location=Sequence derived from alignment at scaffold_455:407732..409276 (Clytia hemisphaerica)
TTCAATATCAGCATTATGATGTTTGTAATAGCAATGATGTGTTATTGGAT
CTCCTGGTTGATTTGTTGCTCAATGACACATTCACCGTCCTAAAAAATCC
ATCTTCCAAAGTAGGTTACCCAGTACCAGACTGGAAAtatgaatcaaaaa
ttttggtccTTTTAGTTTATTTAAACAGACAACAGTTTCAGCTACTGGTT
GAAGTTTTAAGCCAGACTAACATTTTGATTATGAATCTTAGAGAGAGTAT
AATCCTCCACTACAATGAGTATTTGCTGTCTTCCCAATGGATATCTGATG
CTAGTATCAAGAATTTTGGAAGATATTTCAAAGCCATGCTACAGGGGCTA
AATTGTAAATACGTGACAATGgttttgctaagaaaaaatCCTTATCATTT
CGAACTGTATCGTAACATACTTCTTAATCATCAAATTTGTTTGAACATCG
AAATTATAAACAAAGAAGACAATGTACAAGATGTTATTCAAAAACTCCGT
CAAGATGATCAAAATGGCTTGATCATTTTACTTGGTGatgaagataaaca
aacaagGCTTCTTAACAACTATGGTCCTTCAAATCAAACTTGGTTTGTGA
ATGAAAACTACAGTAAAAACATCTCTTCTGAGCTTGGGAATGTCATTTCT
TTCAGAGATGATGCTATAATGAAGTATTCTTCGAATATGAAAGGTTTAAC
AAACTTTATAATGAGATCAAATCTTACCAACTCCTTATCAGAACTTGATT
ACTTTTCAAGGCTTTTCaaagaaattaatttgattACGGCTTTTATAAAA
GACGAACTAaccattaaaaataaaatccaaaatttgaaagACTTTTTGGA
GAAGATTTTTCCAGCCAAGTTAATAGGAGTTCAGAAATTAGGGATCGTGA
GTCTTTTCTCACGGACAGTTTATCATAGGGTATCTGTCGGACAGAAAGTA
GCAGTAAAGGGCAAGTCAATTCTGAAATATCTATTATACACACCATCACA
GTATATTGTTGAACAAATCGGAAAGTATAGTAAAGAAAATATCTGCCCTC
AAGTTGTCTGTCAACCAGGAAATGAATATCTTTACACCAAGTTGGCTGAT
AATACTACGGATTGGGATACCACATACCGTTGGACGTGTCAACTTTGTGC
ACAAGGATTCTATAAACCGCATCAAGGAAATACGACTTGCAATAAATGTC
CACATGATTATCTTTCGTCCGAAAAACGAGATTCTTGTTATGACCCTTAC
ATTTCAAGAACGCATTCTTTAAAATCACCATTTGTGGTATTCGCTACCAT
ACTGACTTCTTTTGGATTGTGTTCATGTGTTTTCGTGTTTGTGGAGTTTT
TCAAGTACCGTGCAACCCCTATGATGAAAGCTGCTGATGTCAGCATGACG
TATGCTCATTTAATCATCATTGCTCTAAATTTTGTTTTACTGTTTCTCAG
TTACTATGGTGCGCCAAACAtcttaaaatgtcattttcgcATGATTTCGT
TTACAGTTTCCTACACAATTATCGTTGGAATTATATTATTGAGAG Coding sequence (CDS) from alignment at scaffold_455:407732..409276 >TCONS_00066484 ID=TCONS_00066484|Name=TCONS_00066484|organism=Clytia hemisphaerica|type=CDS|length=1542bp|location=Sequence derived from alignment at scaffold_455:407732..409276 (Clytia hemisphaerica)
CAATATCAGCATTATGATGTTTGTAATAGCAATGATGTGTTATTGGATCT
CCTGGTTGATTTGTTGCTCAATGACACATTCACCGTCCTAAAAAATCCAT
CTTCCAAAGTAGGTTACCCAGTACCAGACTGGAAAtatgaatcaaaaatt
ttggtccTTTTAGTTTATTTAAACAGACAACAGTTTCAGCTACTGGTTGA
AGTTTTAAGCCAGACTAACATTTTGATTATGAATCTTAGAGAGAGTATAA
TCCTCCACTACAATGAGTATTTGCTGTCTTCCCAATGGATATCTGATGCT
AGTATCAAGAATTTTGGAAGATATTTCAAAGCCATGCTACAGGGGCTAAA
TTGTAAATACGTGACAATGgttttgctaagaaaaaatCCTTATCATTTCG
AACTGTATCGTAACATACTTCTTAATCATCAAATTTGTTTGAACATCGAA
ATTATAAACAAAGAAGACAATGTACAAGATGTTATTCAAAAACTCCGTCA
AGATGATCAAAATGGCTTGATCATTTTACTTGGTGatgaagataaacaaa
caagGCTTCTTAACAACTATGGTCCTTCAAATCAAACTTGGTTTGTGAAT
GAAAACTACAGTAAAAACATCTCTTCTGAGCTTGGGAATGTCATTTCTTT
CAGAGATGATGCTATAATGAAGTATTCTTCGAATATGAAAGGTTTAACAA
ACTTTATAATGAGATCAAATCTTACCAACTCCTTATCAGAACTTGATTAC
TTTTCAAGGCTTTTCaaagaaattaatttgattACGGCTTTTATAAAAGA
CGAACTAaccattaaaaataaaatccaaaatttgaaagACTTTTTGGAGA
AGATTTTTCCAGCCAAGTTAATAGGAGTTCAGAAATTAGGGATCGTGAGT
CTTTTCTCACGGACAGTTTATCATAGGGTATCTGTCGGACAGAAAGTAGC
AGTAAAGGGCAAGTCAATTCTGAAATATCTATTATACACACCATCACAGT
ATATTGTTGAACAAATCGGAAAGTATAGTAAAGAAAATATCTGCCCTCAA
GTTGTCTGTCAACCAGGAAATGAATATCTTTACACCAAGTTGGCTGATAA
TACTACGGATTGGGATACCACATACCGTTGGACGTGTCAACTTTGTGCAC
AAGGATTCTATAAACCGCATCAAGGAAATACGACTTGCAATAAATGTCCA
CATGATTATCTTTCGTCCGAAAAACGAGATTCTTGTTATGACCCTTACAT
TTCAAGAACGCATTCTTTAAAATCACCATTTGTGGTATTCGCTACCATAC
TGACTTCTTTTGGATTGTGTTCATGTGTTTTCGTGTTTGTGGAGTTTTTC
AAGTACCGTGCAACCCCTATGATGAAAGCTGCTGATGTCAGCATGACGTA
TGCTCATTTAATCATCATTGCTCTAAATTTTGTTTTACTGTTTCTCAGTT
ACTATGGTGCGCCAAACAtcttaaaatgtcattttcgcATGATTTCGTTT
ACAGTTTCCTACACAATTATCGTTGGAATTATATTATTGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066484-exon-scaffold_455-1491911889:407732..409276 | TCONS_00066484-exon-scaffold_455-1491911889:407732..409276 | Clytia hemisphaerica | exon |
| TCONS_00066484-exon-scaffold_455-1510915933:407732..409276 | TCONS_00066484-exon-scaffold_455-1510915933:407732..409276 | Clytia hemisphaerica | exon |
| TCONS_00066484-exon-scaffold_455-1575043694:407732..409276 | TCONS_00066484-exon-scaffold_455-1575043694:407732..409276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:407732..409276 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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