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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066478 ID=TCONS_00066478|Name=TCONS_00066478|organism=Clytia hemisphaerica|type=transcript|length=773bp
GTTTCGTGCTGATCATATCAGTTGAAAGATATATTGGAATCACCTACCCA
TTCTCCAGAGGATTATCTTCAACCGTCATCTACTCTCTGGTTGCCCTAAA
TGCCATTGTATCTACCGTTTCCGTCATCCCAGCAAGCATTGTATTAAGTA
CACACAAAGAAGGACCTCAAAATGAAAACGTTTGTAACGAAGTATGGAAG
AGTCCAGGACATTCACGTATATACACTTGGGTATTGTTTGTAACATCATT
TGCAGCTCCTGTCATTATCATTACAGTTCTCTACTTATTGAtgttattca
aattaaagaAAGCGACCACAAAATGTTTGGAGAAAATGACCAATGCTGAT
GATTCAATACAACTGAAACGAAAACGAGAAAATAAGCGTGTCACAGCTAT
CGTCATGTCTTTACTTGTTGCCTTTGTTCTATTTGTTTCACCCAATCGAG
TCTTTTGGATCATCAAAGATGAAGGCATCCTGGACAAGATTATGAAGGAG
AATCGACAGACGACAGGCTACATCAATCTAGTCTGTGATACCGCTTATAT
CATCCATGCTGTGATCAATCCTTTCATATATTCAGTTGTCGACTCTAAAT
TCAGATCTTCTTTGAAACGATTGTTTACTAACCGCAAACCAGATCTATCT
TACTCATCCAAAGGATATTCATATAGAAAAGACAGTGCACGTATTACCAC
GGCAACCAGTTGTGGAAATTTATCTCAGGTCAGCGGTAATAGCAAAGTTG
ATGACGTTTAATAAGGAACAATG Run BLAST on NCBI protein sequence of TCONS_00066478-protein >TCONS_00066478-protein ID=TCONS_00066478-protein|Name=TCONS_00066478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
FVLIISVERYIGITYPFSRGLSSTVIYSLVALNAIVSTVSVIPASIVLST
HKEGPQNENVCNEVWKSPGHSRIYTWVLFVTSFAAPVIIITVLYLLMLFK
LKKATTKCLEKMTNADDSIQLKRKRENKRVTAIVMSLLVAFVLFVSPNRV
FWIIKDEGILDKIMKENRQTTGYINLVCDTAYIIHAVINPFIYSVVDSKF
RSSLKRLFTNRKPDLSYSSKGYSYRKDSARITTATSCGNLSQVSGNSKVD
DV Run BLAST on NCBI transcript from alignment at scaffold_455:181930..182702 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066478 ID=TCONS_00066478|Name=TCONS_00066478|organism=Clytia hemisphaerica|type=transcript|length=773bp|location=Sequence derived from alignment at scaffold_455:181930..182702 (Clytia hemisphaerica)
CATTGTTCCTTATTAAACGTCATCAACTTTGCTATTACCGCTGACCTGAG
ATAAATTTCCACAACTGGTTGCCGTGGTAATACGTGCACTGTCTTTTCTA
TATGAATATCCTTTGGATGAGTAAGATAGATCTGGTTTGCGGTTAGTAAA
CAATCGTTTCAAAGAAGATCTGAATTTAGAGTCGACAACTGAATATATGA
AAGGATTGATCACAGCATGGATGATATAAGCGGTATCACAGACTAGATTG
ATGTAGCCTGTCGTCTGTCGATTCTCCTTCATAATCTTGTCCAGGATGCC
TTCATCTTTGATGATCCAAAAGACTCGATTGGGTGAAACAAATAGAACAA
AGGCAACAAGTAAAGACATGACGATAGCTGTGACACGCTTATTTTCTCGT
TTTCGTTTCAGTTGTATTGAATCATCAGCATTGGTCATTTTCTCCAAACA
TTTTGTGGTCGCTTtctttaatttgaataacaTCAATAAGTAGAGAACTG
TAATGATAATGACAGGAGCTGCAAATGATGTTACAAACAATACCCAAGTG
TATATACGTGAATGTCCTGGACTCTTCCATACTTCGTTACAAACGTTTTC
ATTTTGAGGTCCTTCTTTGTGTGTACTTAATACAATGCTTGCTGGGATGA
CGGAAACGGTAGATACAATGGCATTTAGGGCAACCAGAGAGTAGATGACG
GTTGAAGATAATCCTCTGGAGAATGGGTAGGTGATTCCAATATATCTTTC
AACTGATATGATCAGCACGAAAC Coding sequence (CDS) from alignment at scaffold_455:181930..182702 >TCONS_00066478 ID=TCONS_00066478|Name=TCONS_00066478|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_455:181930..182702 (Clytia hemisphaerica)
TTAAACGTCATCAACTTTGCTATTACCGCTGACCTGAGATAAATTTCCAC
AACTGGTTGCCGTGGTAATACGTGCACTGTCTTTTCTATATGAATATCCT
TTGGATGAGTAAGATAGATCTGGTTTGCGGTTAGTAAACAATCGTTTCAA
AGAAGATCTGAATTTAGAGTCGACAACTGAATATATGAAAGGATTGATCA
CAGCATGGATGATATAAGCGGTATCACAGACTAGATTGATGTAGCCTGTC
GTCTGTCGATTCTCCTTCATAATCTTGTCCAGGATGCCTTCATCTTTGAT
GATCCAAAAGACTCGATTGGGTGAAACAAATAGAACAAAGGCAACAAGTA
AAGACATGACGATAGCTGTGACACGCTTATTTTCTCGTTTTCGTTTCAGT
TGTATTGAATCATCAGCATTGGTCATTTTCTCCAAACATTTTGTGGTCGC
TTtctttaatttgaataacaTCAATAAGTAGAGAACTGTAATGATAATGA
CAGGAGCTGCAAATGATGTTACAAACAATACCCAAGTGTATATACGTGAA
TGTCCTGGACTCTTCCATACTTCGTTACAAACGTTTTCATTTTGAGGTCC
TTCTTTGTGTGTACTTAATACAATGCTTGCTGGGATGACGGAAACGGTAG
ATACAATGGCATTTAGGGCAACCAGAGAGTAGATGACGGTTGAAGATAAT
CCTCTGGAGAATGGGTAGGTGATTCCAATATATCTTTCAACTGATATGAT
CAGCACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066478-exon-scaffold_455-1491911889:181930..182702 | TCONS_00066478-exon-scaffold_455-1491911889:181930..182702 | Clytia hemisphaerica | exon |
| TCONS_00066478-exon-scaffold_455-1510915933:181930..182702 | TCONS_00066478-exon-scaffold_455-1510915933:181930..182702 | Clytia hemisphaerica | exon |
| TCONS_00066478-exon-scaffold_455-1575043694:181930..182702 | TCONS_00066478-exon-scaffold_455-1575043694:181930..182702 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:181930..182702 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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