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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066473 ID=TCONS_00066473|Name=TCONS_00066473|organism=Clytia hemisphaerica|type=transcript|length=2703bp
CTATTTTCTGTTGAAAGatcatgaaaaatttcatccaGAGGGGCCCCCTT
AGTGAAAAGGCAGTGAGTAAATAAAAGTGTAATCGGTCATCCGTAACAAT
TTTCTTTCTGCAAGAACCCGACATTGATAAATTATATacattttgaattc
aaacataTTTAACTGattcagtgaaaaaataaagCATTTGGACtgcaaaa
tacgaaaatacgAATGAATGATTCCTCTGGATTTCTGCATAATAATCGAT
AATACATATTCTCCAGTGCAGAGAAATAAAGCGTTAGCACTTGGACTGCA
AACAACGAAAATACACGATATAAATGAACGATACCTGCATTAAAATCGAT
AATGCACATTCTCAACGTTCCTCCATAATAATGGATAAAACGTATTCCCC
AGTGAAAACGTAAACGTCAGCATAATGACTGGAAACGACGAAAACAGACG
ATACGAATAATTCCTCCATAATAATGGATAATACGTATCCCCCAGTGAAA
ACGTAAACGTCAGCATAATGACTGGAAACGACGAAAACAGACGATACGAA
TAATTCCTCCATAATAATGGATAATACGTATCCTCCACTGAAAACGTAAA
CGTCAGCATAATGACTGGAAACGACGAAAACAGACGATACGAATAATTCC
TCCATAATAATGGATAATACGTATCCCCCAGTGAAAACGTAAACGTCAGC
ATTATGACTGGAAACGACGAAAAAAGACGATACGAATGATTCCTCCATAA
TAATGGATAATACGTATCCCCCAGTGAAAACGTAAACGTCAGCATTATGA
CTGGAAACGACGAAAAAAGACGATACGAATGATTCCTCCATAATAATGGA
TAATACGTATCCCCCAGTGAAAACGTAAACGTCAGCATTATGACTGGAAA
CGACGAAAAAAGACGATACGAATGATTCCTCCATAATAATGGATAATACG
TATCCCCCAGTGAAAACGTAAACGTCAGCATTATGACTGGAAACGACGAA
AAAAGACGATACGAATGATTCCTCCATAATAATGGATAATACGTATCCCC
CAGTGAAAACGTAAACGTCAGCATTATGACTGGAAACGACGAAAAAAGAC
GATACGAATGATTCCTCCATAATAATGGATAATACGTATCCCCCACTGAA
AACGTAAACGTCAGCATAATGACTGGAAACGACGAAAACAGACGATACGA
ATGATTCCTCCATAATAATGGATAAAACGTATTCCCCAGTGAAAACGTAA
AACGTCAGCATCATGACTGGAAACGACGAAAATGGACGATACGAATGATT
CCTCCATAATAATGGATAATACGTATCCCCCTGTGAAAACGTAAACGTCA
GCAGTATGACTGAAAACCACGAAAACAGACGATACGAATAATTCCTCCAT
AATAATGGATAAAACGTATTCCCCAGTGAAAACGTAAAACGTCAGCATCA
TGACTGGAAACCACGAAAACAGACGATACGAATAATTCCTCCATAATAAT
GGATAAAACGTATTCCCCAGTGAAAACGTAAAACGTCAGCATCATGACTG
GAAACCACGAAAACAGACGATACGAATAATTCCTCCATAATAATGGATAA
AACGTATTCCCCAGTGAAAACGTAAAACGTCAGCATCATGACTGGAAACC
ACGAAAACAGACGATACGAATAATTCCTCCATAATAATGGATAAAACGTA
TTCCCCAGTGGAAACGTCAAACGTCAGCATTATGACTGGAAGCGACGAAA
ATAGATGGTACGAATGATTCCTGCATAATAATCGATTATACTTCGATACT
TCTCTAGTGAAAACGTCAAACCTCAGCATTATGACTGGAAACGAATGCTT
GATACATAATAACTGATAATACGTATTCCCCAGTGAAAACGTAAAAAGTC
AGCAGCATGACTAGAAACGACGAAAAAAGACGATACGAATGATTCCTCCA
TAATAATGGATAAAACGTATTCCCCACTGAAAACGTAAACGTCAGCATTA
TGACTGGAAACGACGAAAACAGACGAAACGAATGATTCCTCCATAATAAT
GGATAAAACGTATTCCCCAGTGAAAACGTAAAACGTCAGCATCATGACTG
GAAACGACGAAAATGGACGATACGAATGATTCCTCCATAATAATGGATAA
AACGTATTCCCCAGTGAAAACGTAAAACGTCAGCATCATGACTGGAAACG
ACGAAAATGGACGATACGAATGATTCCTCCATAATAATGGATAATAAGTA
TCCCCCAGTGAAAACGTAAAACGTCAGCATCATGACTGGAAACGACGAAA
ATGGACGATACGAATGATTCCTCCATAATAATGGATAATAAGTATCCCCC
AGTGAAAACGTAAAACGTCAGCAGTATGTCTGGAAACGACGAAAATAGAT
GACAGGAATGATTTCTCCATAATAATGGATAAAACGTATCCCCAGTGAAA
ACGTAAACGTCAGCATAATGACTTGAAACCACAAAAATAGTTGAAGCAAA
TGAATACTTCCTGCATACAGATCAATAACACGTTTTATCTCGTGGAAACG
TAAAAAATAAGCATTCGGACTGCAATCGACAACAATCGTTCGCCATCTGT
TTtcttttgttgctttttaattTAGAGTTTTTTTCGCATTATCCTTTCAA
TTCCCAATTTATAATTAGTGTTTAACTTCATTTTCCTTTCagttaaattc
taa Run BLAST on NCBI protein sequence of TCONS_00066473-protein >TCONS_00066473-protein ID=TCONS_00066473-protein|Name=TCONS_00066473-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MMLTFYVFTGEYVLSIIMEESFVSSVFVVSSHYADVYVFSGGYVLSIIME
ESFVSSFFVVSSHNADVYVFTGGYVLSIIMEESFVSSFFVVSSHNADVYV
FTGGYVLSIIMEESFVSSFFVVSSHNADVYVFTGGYVLSIIMEESFVSSF
FVVSSHNADVYVFTGGYVLSIIMEESFVSSFFVVSSHNADVYVFTGGYVL
SIIMEELFVSSVFVVSSHYADVYVFSGGYVLSIIMEELFVSSVFVVSSHY
ADVYVFTGGYVLSIIMEELFVSSVFVVSSHYADVYVFTGEYVLSIIMEER Run BLAST on NCBI transcript from alignment at scaffold_455:80510..83212 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066473 ID=TCONS_00066473|Name=TCONS_00066473|organism=Clytia hemisphaerica|type=transcript|length=2703bp|location=Sequence derived from alignment at scaffold_455:80510..83212 (Clytia hemisphaerica)
ttagaatttaactGAAAGGAAAATGAAGTTAAACACTAATTATAAATTGG
GAATTGAAAGGATAATGCGAAAAAAACTCTAaattaaaaagcaacaaaag
aAAACAGATGGCGAACGATTGTTGTCGATTGCAGTCCGAATGCTTATTTT
TTACGTTTCCACGAGATAAAACGTGTTATTGATCTGTATGCAGGAAGTAT
TCATTTGCTTCAACTATTTTTGTGGTTTCAAGTCATTATGCTGACGTTTA
CGTTTTCACTGGGGATACGTTTTATCCATTATTATGGAGAAATCATTCCT
GTCATCTATTTTCGTCGTTTCCAGACATACTGCTGACGTTTTACGTTTTC
ACTGGGGGATACTTATTATCCATTATTATGGAGGAATCATTCGTATCGTC
CATTTTCGTCGTTTCCAGTCATGATGCTGACGTTTTACGTTTTCACTGGG
GGATACTTATTATCCATTATTATGGAGGAATCATTCGTATCGTCCATTTT
CGTCGTTTCCAGTCATGATGCTGACGTTTTACGTTTTCACTGGGGAATAC
GTTTTATCCATTATTATGGAGGAATCATTCGTATCGTCCATTTTCGTCGT
TTCCAGTCATGATGCTGACGTTTTACGTTTTCACTGGGGAATACGTTTTA
TCCATTATTATGGAGGAATCATTCGTTTCGTCTGTTTTCGTCGTTTCCAG
TCATAATGCTGACGTTTACGTTTTCAGTGGGGAATACGTTTTATCCATTA
TTATGGAGGAATCATTCGTATCGTCTTTTTTCGTCGTTTCTAGTCATGCT
GCTGACTTTTTACGTTTTCACTGGGGAATACGTATTATCAGTTATTATGT
ATCAAGCATTCGTTTCCAGTCATAATGCTGAGGTTTGACGTTTTCACTAG
AGAAGTATCGAAGTATAATCGATTATTATGCAGGAATCATTCGTACCATC
TATTTTCGTCGCTTCCAGTCATAATGCTGACGTTTGACGTTTCCACTGGG
GAATACGTTTTATCCATTATTATGGAGGAATTATTCGTATCGTCTGTTTT
CGTGGTTTCCAGTCATGATGCTGACGTTTTACGTTTTCACTGGGGAATAC
GTTTTATCCATTATTATGGAGGAATTATTCGTATCGTCTGTTTTCGTGGT
TTCCAGTCATGATGCTGACGTTTTACGTTTTCACTGGGGAATACGTTTTA
TCCATTATTATGGAGGAATTATTCGTATCGTCTGTTTTCGTGGTTTCCAG
TCATGATGCTGACGTTTTACGTTTTCACTGGGGAATACGTTTTATCCATT
ATTATGGAGGAATTATTCGTATCGTCTGTTTTCGTGGTTTTCAGTCATAC
TGCTGACGTTTACGTTTTCACAGGGGGATACGTATTATCCATTATTATGG
AGGAATCATTCGTATCGTCCATTTTCGTCGTTTCCAGTCATGATGCTGAC
GTTTTACGTTTTCACTGGGGAATACGTTTTATCCATTATTATGGAGGAAT
CATTCGTATCGTCTGTTTTCGTCGTTTCCAGTCATTATGCTGACGTTTAC
GTTTTCAGTGGGGGATACGTATTATCCATTATTATGGAGGAATCATTCGT
ATCGTCTTTTTTCGTCGTTTCCAGTCATAATGCTGACGTTTACGTTTTCA
CTGGGGGATACGTATTATCCATTATTATGGAGGAATCATTCGTATCGTCT
TTTTTCGTCGTTTCCAGTCATAATGCTGACGTTTACGTTTTCACTGGGGG
ATACGTATTATCCATTATTATGGAGGAATCATTCGTATCGTCTTTTTTCG
TCGTTTCCAGTCATAATGCTGACGTTTACGTTTTCACTGGGGGATACGTA
TTATCCATTATTATGGAGGAATCATTCGTATCGTCTTTTTTCGTCGTTTC
CAGTCATAATGCTGACGTTTACGTTTTCACTGGGGGATACGTATTATCCA
TTATTATGGAGGAATCATTCGTATCGTCTTTTTTCGTCGTTTCCAGTCAT
AATGCTGACGTTTACGTTTTCACTGGGGGATACGTATTATCCATTATTAT
GGAGGAATTATTCGTATCGTCTGTTTTCGTCGTTTCCAGTCATTATGCTG
ACGTTTACGTTTTCAGTGGAGGATACGTATTATCCATTATTATGGAGGAA
TTATTCGTATCGTCTGTTTTCGTCGTTTCCAGTCATTATGCTGACGTTTA
CGTTTTCACTGGGGGATACGTATTATCCATTATTATGGAGGAATTATTCG
TATCGTCTGTTTTCGTCGTTTCCAGTCATTATGCTGACGTTTACGTTTTC
ACTGGGGAATACGTTTTATCCATTATTATGGAGGAACGTTGAGAATGTGC
ATTATCGATTTTAATGCAGGTATCGTTCATTTATATCGTGTATTTTCGTT
GTTTGCAGTCCAAGTGCTAACGCTTTATTTCTCTGCACTGGAGAATATGT
ATTATCGATTATTATGCAGAAATCCAGAGGAATCATTCATTcgtattttc
gtattttgcaGTCCAAATGctttattttttcactgaatCAGTTAAAtatg
tttgaattcaaaatgtATATAATTTATCAATGTCGGGTTCTTGCAGAAAG
AAAATTGTTACGGATGACCGATTACACTTTTATTTACTCACTGCCTTTTC
ACTAAGGGGGCCCCTCtggatgaaatttttcatgatCTTTCAACAGAAAA
TAG Coding sequence (CDS) from alignment at scaffold_455:80510..83212 >TCONS_00066473 ID=TCONS_00066473|Name=TCONS_00066473|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_455:80510..83212 (Clytia hemisphaerica)
ATGATGCTGACGTTTTACGTTTTCACTGGGGAATACGTTTTATCCATTAT
TATGGAGGAATCATTCGTATCGTCTGTTTTCGTCGTTTCCAGTCATTATG
CTGACGTTTACGTTTTCAGTGGGGGATACGTATTATCCATTATTATGGAG
GAATCATTCGTATCGTCTTTTTTCGTCGTTTCCAGTCATAATGCTGACGT
TTACGTTTTCACTGGGGGATACGTATTATCCATTATTATGGAGGAATCAT
TCGTATCGTCTTTTTTCGTCGTTTCCAGTCATAATGCTGACGTTTACGTT
TTCACTGGGGGATACGTATTATCCATTATTATGGAGGAATCATTCGTATC
GTCTTTTTTCGTCGTTTCCAGTCATAATGCTGACGTTTACGTTTTCACTG
GGGGATACGTATTATCCATTATTATGGAGGAATCATTCGTATCGTCTTTT
TTCGTCGTTTCCAGTCATAATGCTGACGTTTACGTTTTCACTGGGGGATA
CGTATTATCCATTATTATGGAGGAATCATTCGTATCGTCTTTTTTCGTCG
TTTCCAGTCATAATGCTGACGTTTACGTTTTCACTGGGGGATACGTATTA
TCCATTATTATGGAGGAATTATTCGTATCGTCTGTTTTCGTCGTTTCCAG
TCATTATGCTGACGTTTACGTTTTCAGTGGAGGATACGTATTATCCATTA
TTATGGAGGAATTATTCGTATCGTCTGTTTTCGTCGTTTCCAGTCATTAT
GCTGACGTTTACGTTTTCACTGGGGGATACGTATTATCCATTATTATGGA
GGAATTATTCGTATCGTCTGTTTTCGTCGTTTCCAGTCATTATGCTGACG
TTTACGTTTTCACTGGGGAATACGTTTTATCCATTATTATGGAGGAACGT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066473-exon-scaffold_455-1491911889:80510..83212 | TCONS_00066473-exon-scaffold_455-1491911889:80510..83212 | Clytia hemisphaerica | exon |
| TCONS_00066473-exon-scaffold_455-1510915933:80510..83212 | TCONS_00066473-exon-scaffold_455-1510915933:80510..83212 | Clytia hemisphaerica | exon |
| TCONS_00066473-exon-scaffold_455-1575043694:80510..83212 | TCONS_00066473-exon-scaffold_455-1575043694:80510..83212 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:80510..83212 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013785 | Aldolase_TIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
The following BLAST results are available for this feature:
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