TCONS_00066461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066461
Unique NameTCONS_00066461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length971

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066461 ID=TCONS_00066461|Name=TCONS_00066461|organism=Clytia hemisphaerica|type=transcript|length=971bp
GATatttcaatagaacaaaaggctcCCTAGCCTATATTTCTATAGCTGAA
TAGCgcaattcttatcctcttttcccaaatctctggtgTGATATAAAGGC
AAGCAATTATATACAATGTCATCAGATTTGGTCATCATTATTTCATGAAA
TACGCAAAACTTGACAAACTTGCCACTTTTACCAGCGACTGCTTTTGGGA
ATCCAGTACTACCAGAGGTGTACTGTAATATGCTGAAATCGTTAGGTTTC
ATGTCCAATCCCTCGACAGCGGTCGAATCCTGCTCGTCTTTGATAAGTCC
ATTCAGATCTTTATAACCTCCTTCAAAAGACTCttcaccaaaaatgaaaa
tctcgACAACAGATTTTTCATGAAAGCTGATGTTCTCTAAAGTTTTAACA
AAGTCAGGAGCGCAAATGACAGCTCTGTAATCGACAATACTTAAACAATG
TTCTAAGCTCTTGCCGTGGAGGTTATAATTAATCTTACCGACTTGGATTC
CAACTTTGTTTAATCCTAACCATATGGGAACATATTCCAATTCATTGCCA
AGGAATAAAGCAATCTTATCTCCTGGTTTATAGCCAGAGTTATTAAAAAC
ACGACCAATTTTGttaacaaaaatttgaatttcattgaAACTTAGAGATC
GTCCTGTTTCAGCGTCGATAAGAGCTTTCTTGtttgggtgtttttgagtt
ACTTCAGAAAATAGCTGGTTCGgggatttctttttgtttttcatcaattt
gggTACAAATCTGGTCATAGTGATAAAAGCCCAATAACAATCTCTGATGA
TAATTCGTTTCGCAAAAGTTAAATCTTTCAGGCTGCCCACCAATAAAAAT
GACATCTGGATTCCAAATATTGAATAGAAGTAATAAAGTAAAGATACATA
GCCAAATACTTTCCATGGATTGCACGGagccattttgtttattttgatct
tCAATCTCTATTTTACAGATC
Run BLAST on NCBI

transcript from alignment at scaffold_455:438725..439695-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066461 ID=TCONS_00066461|Name=TCONS_00066461|organism=Clytia hemisphaerica|type=transcript|length=971bp|location=Sequence derived from alignment at scaffold_455:438725..439695- (Clytia hemisphaerica)
GATATTTCAATAGAACAAAAGGCTCCCTAGCCTATATTTCTATAGCTGAA
TAGCGCAATTCTTATCCTCTTTTCCCAAATCTCTGGTGTGATATAAAGGC
AAGCAATTATATACAATGTCATCAGATTTGGTCATCATTATTTCATGAAA
TACGCAAAACTTGACAAACTTGCCACTTTTACCAGCGACTGCTTTTGGGA
ATCCAGTACTACCAGAGGTGTACTGTAATATGCTGAAATCGTTAGGTTTC
ATGTCCAATCCCTCGACAGCGGTCGAATCCTGCTCGTCTTTGATAAGTCC
ATTCAGATCTTTATAACCTCCTTCAAAAGACTCTTCACCAAAAATGAAAA
TCTCGACAACAGATTTTTCATGAAAGCTGATGTTCTCTAAAGTTTTAACA
AAGTCAGGAGCGCAAATGACAGCTCTGTAATCGACAATACTTAAACAATG
TTCTAAGCTCTTGCCGTGGAGGTTATAATTAATCTTACCGACTTGGATTC
CAACTTTGTTTAATCCTAACCATATGGGAACATATTCCAATTCATTGCCA
AGGAATAAAGCAATCTTATCTCCTGGTTTATAGCCAGAGTTATTAAAAAC
ACGACCAATTTTGTTAACAAAAATTTGAATTTCATTGAAACTTAGAGATC
GTCCTGTTTCAGCGTCGATAAGAGCTTTCTTGTTTGGGTGTTTTTGAGTT
ACTTCAGAAAATAGCTGGTTCGGGGATTTCTTTTTGTTTTTCATCAATTT
GGGTACAAATCTGGTCATAGTGATAAAAGCCCAATAACAATCTCTGATGA
TAATTCGTTTCGCAAAAGTTAAATCTTTCAGGCTGCCCACCAATAAAAAT
GACATCTGGATTCCAAATATTGAATAGAAGTAATAAAGTAAAGATACATA
GCCAAATACTTTCCATGGATTGCACGGAGCCATTTTGTTTATTTTGATCT
TCAATCTCTATTTTACAGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041577XLOC_041577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066461-exon-scaffold_455-1575043694:438725..439695TCONS_00066461-exon-scaffold_455-1575043694:438725..439695Clytia hemisphaericaexon
TCONS_00066461-exon-scaffold_455-1510915933:438725..439695TCONS_00066461-exon-scaffold_455-1510915933:438725..439695Clytia hemisphaericaexon
TCONS_00066461-exon-scaffold_455-1491911889:438725..439695TCONS_00066461-exon-scaffold_455-1491911889:438725..439695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:438725..439695 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14705	1.53318	1.1613	1.117	0.125574	0	0	0	0.0473291	0	0.250018	0.124031	0.887151	2.99357	3.80296	4.10989	1.43301	0.752306	0.742394	0.520274	0.0586199	0.156005	0.92167	0.967042	0	0.24931	0.274261	0	0.546827	0.56133
Blast
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BLAST of TCONS_00066461 vs. Swiss-Prot (Human)
Match: S27A1 (Long-chain fatty acid transport protein 1 OS=Homo sapiens GN=SLC27A1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.680e-29
Identity = 67/215 (31.16%), Postives = 110/215 (51.16%), Query Frame = -3 
Query:   85 QLFSEVTQKHPNKKALIDAETGRSLSFNEIQIFVNKIGRVFNNSGYKPGDKIALFLGNELEYVPIWLGLNKVGIQVGKINYNLHGKSLEHCLSIVDYRAVICAPDFVKTLENISFHEKSVVXXXXXXXXXXXXGYKD---LNGLIKDEQDSTAVEGLDMKPNDFSILQYTSGSTGFPKAVAGKSGKFVKFCVF-HEIMMTKSDDIVYNCLPLYHT 717
            ++F  V Q+ P + AL+DA TG   +F ++  + N +  +F   G+ PGD +A+FL    E+V +WLGL K G++   +N NL  + L  CL     +A+I   + V  +  +S H    +  F  G+   EG   D   L+ L+K+   +   +      +D     YTSG+TG PKA      ++ +   F H     ++ D++Y+CLPLYH+
Sbjct:   80 RIFQAVVQRQPERLALVDAGTGECWTFAQLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREPLAFCLGTSGAKALIFGGEMVAAVAEVSGHLGKSLIKFCSGDLGPEGILPDTHLLDPLLKEASTAPLAQIPSKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQAADVLYDCLPLYHS 294
The following BLAST results are available for this feature:
BLAST of TCONS_00066461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S27A11.680e-2931.16Long-chain fatty acid transport protein 1 OS=Homo ... [more]
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