Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066461 ID=TCONS_00066461|Name=TCONS_00066461|organism=Clytia hemisphaerica|type=transcript|length=971bp
GATatttcaatagaacaaaaggctcCCTAGCCTATATTTCTATAGCTGAA
TAGCgcaattcttatcctcttttcccaaatctctggtgTGATATAAAGGC
AAGCAATTATATACAATGTCATCAGATTTGGTCATCATTATTTCATGAAA
TACGCAAAACTTGACAAACTTGCCACTTTTACCAGCGACTGCTTTTGGGA
ATCCAGTACTACCAGAGGTGTACTGTAATATGCTGAAATCGTTAGGTTTC
ATGTCCAATCCCTCGACAGCGGTCGAATCCTGCTCGTCTTTGATAAGTCC
ATTCAGATCTTTATAACCTCCTTCAAAAGACTCttcaccaaaaatgaaaa
tctcgACAACAGATTTTTCATGAAAGCTGATGTTCTCTAAAGTTTTAACA
AAGTCAGGAGCGCAAATGACAGCTCTGTAATCGACAATACTTAAACAATG
TTCTAAGCTCTTGCCGTGGAGGTTATAATTAATCTTACCGACTTGGATTC
CAACTTTGTTTAATCCTAACCATATGGGAACATATTCCAATTCATTGCCA
AGGAATAAAGCAATCTTATCTCCTGGTTTATAGCCAGAGTTATTAAAAAC
ACGACCAATTTTGttaacaaaaatttgaatttcattgaAACTTAGAGATC
GTCCTGTTTCAGCGTCGATAAGAGCTTTCTTGtttgggtgtttttgagtt
ACTTCAGAAAATAGCTGGTTCGgggatttctttttgtttttcatcaattt
gggTACAAATCTGGTCATAGTGATAAAAGCCCAATAACAATCTCTGATGA
TAATTCGTTTCGCAAAAGTTAAATCTTTCAGGCTGCCCACCAATAAAAAT
GACATCTGGATTCCAAATATTGAATAGAAGTAATAAAGTAAAGATACATA
GCCAAATACTTTCCATGGATTGCACGGagccattttgtttattttgatct
tCAATCTCTATTTTACAGATC Run BLAST on NCBI transcript from alignment at scaffold_455:438725..439695- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066461 ID=TCONS_00066461|Name=TCONS_00066461|organism=Clytia hemisphaerica|type=transcript|length=971bp|location=Sequence derived from alignment at scaffold_455:438725..439695- (Clytia hemisphaerica)
GATATTTCAATAGAACAAAAGGCTCCCTAGCCTATATTTCTATAGCTGAA
TAGCGCAATTCTTATCCTCTTTTCCCAAATCTCTGGTGTGATATAAAGGC
AAGCAATTATATACAATGTCATCAGATTTGGTCATCATTATTTCATGAAA
TACGCAAAACTTGACAAACTTGCCACTTTTACCAGCGACTGCTTTTGGGA
ATCCAGTACTACCAGAGGTGTACTGTAATATGCTGAAATCGTTAGGTTTC
ATGTCCAATCCCTCGACAGCGGTCGAATCCTGCTCGTCTTTGATAAGTCC
ATTCAGATCTTTATAACCTCCTTCAAAAGACTCTTCACCAAAAATGAAAA
TCTCGACAACAGATTTTTCATGAAAGCTGATGTTCTCTAAAGTTTTAACA
AAGTCAGGAGCGCAAATGACAGCTCTGTAATCGACAATACTTAAACAATG
TTCTAAGCTCTTGCCGTGGAGGTTATAATTAATCTTACCGACTTGGATTC
CAACTTTGTTTAATCCTAACCATATGGGAACATATTCCAATTCATTGCCA
AGGAATAAAGCAATCTTATCTCCTGGTTTATAGCCAGAGTTATTAAAAAC
ACGACCAATTTTGTTAACAAAAATTTGAATTTCATTGAAACTTAGAGATC
GTCCTGTTTCAGCGTCGATAAGAGCTTTCTTGTTTGGGTGTTTTTGAGTT
ACTTCAGAAAATAGCTGGTTCGGGGATTTCTTTTTGTTTTTCATCAATTT
GGGTACAAATCTGGTCATAGTGATAAAAGCCCAATAACAATCTCTGATGA
TAATTCGTTTCGCAAAAGTTAAATCTTTCAGGCTGCCCACCAATAAAAAT
GACATCTGGATTCCAAATATTGAATAGAAGTAATAAAGTAAAGATACATA
GCCAAATACTTTCCATGGATTGCACGGAGCCATTTTGTTTATTTTGATCT
TCAATCTCTATTTTACAGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066461-exon-scaffold_455-1575043694:438725..439695 | TCONS_00066461-exon-scaffold_455-1575043694:438725..439695 | Clytia hemisphaerica | exon |
| TCONS_00066461-exon-scaffold_455-1510915933:438725..439695 | TCONS_00066461-exon-scaffold_455-1510915933:438725..439695 | Clytia hemisphaerica | exon |
| TCONS_00066461-exon-scaffold_455-1491911889:438725..439695 | TCONS_00066461-exon-scaffold_455-1491911889:438725..439695 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:438725..439695 - |
Blast
BLAST of TCONS_00066461 vs. Swiss-Prot (Human)
Match: S27A1 (Long-chain fatty acid transport protein 1 OS=Homo sapiens GN=SLC27A1 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.680e-29 Identity = 67/215 (31.16%), Postives = 110/215 (51.16%), Query Frame = -3 Query: 85 QLFSEVTQKHPNKKALIDAETGRSLSFNEIQIFVNKIGRVFNNSGYKPGDKIALFLGNELEYVPIWLGLNKVGIQVGKINYNLHGKSLEHCLSIVDYRAVICAPDFVKTLENISFHEKSVVXXXXXXXXXXXXGYKD---LNGLIKDEQDSTAVEGLDMKPNDFSILQYTSGSTGFPKAVAGKSGKFVKFCVF-HEIMMTKSDDIVYNCLPLYHT 717
++F V Q+ P + AL+DA TG +F ++ + N + +F G+ PGD +A+FL E+V +WLGL K G++ +N NL + L CL +A+I + V + +S H + F G+ EG D L+ L+K+ + + +D YTSG+TG PKA ++ + F H ++ D++Y+CLPLYH+
Sbjct: 80 RIFQAVVQRQPERLALVDAGTGECWTFAQLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREPLAFCLGTSGAKALIFGGEMVAAVAEVSGHLGKSLIKFCSGDLGPEGILPDTHLLDPLLKEASTAPLAQIPSKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQAADVLYDCLPLYHS 294
The following BLAST results are available for this feature:
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