TCONS_00066460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066460
Unique NameTCONS_00066460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1033

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066460 ID=TCONS_00066460|Name=TCONS_00066460|organism=Clytia hemisphaerica|type=transcript|length=1033bp
GATatttcaatagaacaaaaggctcCCTAGCCTATATTTCTATAGCTGAA
TAGCgcaattcttatcctcttttcccaaatctctggtgTGATATAAAGGC
AAGCAATTATATACAATGTCATCAGATTTGGTCATCATTATTTCATGAAA
TACGCAAAACTTGACAAACTTGCCACTTTTACCAGCGACTGCTTTTGGGA
ATCCAGTACTACCAGAGGTGTACTGTAATATGCTGAAATCGTTAGGTTTC
ATGTCCAATCCCTCGACAGCGGTCGAATCCTGCTCGTCTTTGATAAGTCC
ATTCAGATCTTTATAACCTCCTTCAAAAGACTCttcaccaaaaatgaaaa
tctcgACAACAGATTTTTCATGAAAGCTGATGTTCTCTAAAGTTTTAACA
AAGTCAGGAGCGCAAATGACAGCTCTGTAATCGACAATACTTAAACAATG
TTCTAAGCTCTTGCCGTGGAGGTTATAATTAATCTTACCGACTTGGATTC
CAACTTTGTTTAATCCTAACCATATGGGAACGTACTCCAACTCATTTCCA
AGGAATAGCGCAATTTTATCTCCTGGTTTATAACCAGACTTATTAAAAAC
ACGACCAATTttgttgataaaattttgaatttcgttGAAAGTTAAAGATC
GTCCTGTTTCAGCGTCGATAAGGGCTTTTTTGTTTGGAAGTTGTTCAGCC
TTTTCAGATAAANGATCGTCCTGTTTCAGCGTCGATAAGGGCTTTTTTGT
TTGGAAGTTGTTCAGCCTTTTCGGATAAGAACTGGTTCggtgatttttct
ttgtttttcaacaTATTTGGAACAACTCTGGTCAAAGTAATAAAGAACCA
ATAACAATCTCTGATGATAATTCGTTTAGCGAAAGCCAAATCTTTCAAAC
CATCAGTGAAATAGACAAGACTGCTGACCAATATGAACGACATCTTGATT
CCAAGTATTGAATAGAAGTAATAAAGTAATGACACATAGCCAAATACTTT
CCATGGATCACACGGAGCCATTTTGATTCCTAT
Run BLAST on NCBI

transcript from alignment at scaffold_455:433582..439695-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066460 ID=TCONS_00066460|Name=TCONS_00066460|organism=Clytia hemisphaerica|type=transcript|length=6114bp|location=Sequence derived from alignment at scaffold_455:433582..439695- (Clytia hemisphaerica)
GATATTTCAATAGAACAAAAGGCTCCCTAGCCTATATTTCTATAGCTGAA
TAGCGCAATTCTTATCCTCTTTTCCCAAATCTCTGGTGTGATATAAAGGC
AAGCAATTATATACAATGTCATCAGATTTGGTCATCATTATTTCATGAAA
TACGCAAAACTTGACAAACTTGCCACTTTTACCAGCGACTGCTTTTGGGA
ATCCAGTACTACCAGAGGTGTACTGTAATATGCTGAAATCGTTAGGTTTC
ATGTCCAATCCCTCGACAGCGGTCGAATCCTGCTCGTCTTTGATAAGTCC
ATTCAGATCTTTATAACCTCCTTCAAAAGACTCTTCACCAAAAATGAAAA
TCTCGACAACAGATTTTTCATGAAAGCTGATGTTCTCTAAAGTTTTAACA
AAGTCAGGAGCGCAAATGACAGCTCTGTAATCGACAATACTTAAACAATG
TTCTAAGCTCTTGCCGTGGAGGTTATAATTAATCTTACCGACTTGGATTC
CAACTTTGTTTAATCCTAACCATATGGGAACATATTCCAATTCATTGCCA
AGGAATAAAGCAATCTTATCTCCTGGTTTATAGCCAGAGTTATTAAAAAC
ACGACCAATTTTGTTAACAAAAATTTGAATTTCATTGAAACTTAGAGATC
GTCCTGTTTCAGCGTCGATAAGAGCTTTCTTGTTTGGGTGTTTTTGAGTT
ACTTCAGAAAATAGCTGGTTCGGGGATTTCTTTTTGTTTTTCATCAATTT
GGGTACAAATCTGGTCATAGTGATAAAAGCCCAATAACAATCTCTGATGA
TAATTCGTTTCGCAAAAGTTAAATCTTTCAGGCTGCCCACCAATAAAAAT
GACATCTGGATTCCAAATATTGAATAGAAGTAATAAAGTAAAGATACATA
GCCAAATACTTTCCATGGATTGCACGGAGCCATTTTGTTTATTTTGATCT
TCAATCTCTATTTTACAGATCTAAAAATATGAGCAAATGTACAATAAATA
CATTAATAACATTTCTTAAATAGGGATTCAAGAAAGCATTTTCAGGAAGA
TAACATAATGGAAAAATTACTACCGATTCTTTTTGATATTCAACGAATGT
TACACCCCTCCATCAGTGACCTGGTCAGATCCACATCGATAGAACCCGTG
GGAAAAATCGGCAAAAACGGCTTTACTTTAATTTCCGCTGGGATAATGAG
TAAATCCGATAAAAATTAACTTAAGTTCTCTACCTCAATCCAAATTGTAA
ATCTACGGCCTTTGGCCAGTCAAAAATCCCATTGGTCAAAATTGGTCAAG
CAGACATATTCATGAATTTTTTTATATGATCCCTGTGGACTTTACGATTT
CCCTGTGTCACTTAGACAGGGGTGTAAGTTTTAAATCAATAAGTGAAAAG
ATACTAAAGAATGTGTAAAAATAAGTGTTTGGTTCTCATTCAAAAAGTTC
TCAGCAGGTATAAACCTTAGGTAATTTAGTAATAGGTCATTTGAACCACT
TTTTGATTTAACTAATGGCCCAGGGGGGATACTTGTGCCGGGTGTGCGAG
CCGTAAGGGTCCCTTTTTCACACTTTCGAAAGTTTCTAAACAAAAACCAT
TAAAAAGAAAATTGAGCCTCGATCTGTAAGGGTCCAAAAATCACGAAATT
CAAAATTTCCTCGCACAAAGGGTCGAAAATCTCAGATCGAGTGAAAATCG
ATAAAGATTTTGAGAAAAGTCTCTCTAAGGGTCAATTTTCGATTTTTGGC
TCGGAAATACCCATCACCGCACAAACCTAGTACGCCCCCCCCCCAGGACT
AATGGTAGTGAACCAAATTTCATGAGGTTTATATATTTCTTTTCTGACGA
AAATAACAAAATGATAAAACGTGCAAAGTCTCACAGTTTGAGAATCATAA
AGATTTATAACGGACCCCAGTTTTGAGGAAGTGATTAAAATCAAAGGATA
AAATATTTTAAATGCAATAAAATGAATATTGTAGATAATGTATATATGAT
TATGAAAATGACTATAGGAGNAATAAAGTAAAGATACATAGCCAAATACT
TTCCATGGATTGCACGGAGCCATTTTGTTTATTTTGATCTTCAATCTCTA
TTTTACAGATCTAGAAATATGAGCAAATGTACAATAAATACATTAATAAC
ATTTCTTAAATAGGGATTCAAGAAAGCATTTTCAGGGAGATAACATAATG
GAAAAATTACTGCCGATTCTTTTTTATATTCAACGAATGTTACACCCCTC
CATCAGTGACCTGGTCAGATCCACATCGATAGAACCCGTGGGAAAAATCG
GCAAAAACGGCATTACTTTAATTCCCGCTGGGATAATGAGTAAATCCGAT
AAAAATTAACTTAAGTTCTCTACCTCAATCCAAATTGTAAATCTACGGCC
TTTGGCCAGTCAAAAATCCCATTGGTCAAAATTGGTCAAGCAGACATATT
CATGAATTTTTTTATATGATTCCTGTGGACTTTACGATTTCCCTGGGTCA
CTTAGACAGGGGTGTAAGTTTTAAATCAATAAGTGAAAAGATACTAAAGA
ATGTGTAAAAATAAGTGTTTGGTTCTCATTCAAAAAGATCTCATCAGGTA
TAAACCTTAGGTAATTTAGTAATAGGTCATTTGCACCACTTTTTGATCTA
ACTAATGGCCCAATAGGGGGGGATACTTAAACAAAATGGGTGCCGGGTGT
GTGCGAGCCGTAAGGGTCCCTTTTTCACACTTTCGAAAGTCTCTAAACAA
AAACCATTAAAAAGAAAATTGGGTCTCAGTAAGGGTCCAAAATTCACGTA
ATTCAAAATTTCCTCTCTCAAAGGGTCGTGATTTTCCAAAATTTGGACAA
ACGTCGAGTGAAAATCGACCANAAATCTTAGCGTGTGAAAGTATTTCATA
AAATATGATTCATGATGAAATGCCAGGACCAATTGATCAAAATTTGGTAT
GTCCTTAAAAAAAATTTAGTCTCTATCTAAGAAAAGTCAATTTTCCAAGT
CTCAAGAAACCCTTTTGAAGATGCTCCAGAACTAAAAGTTTCTCTAGGCC
TTGATAGCGATATTTAGAAAGACCATCAAATTTTAATAAATTGTTTATCA
ATGGTCAGCTATTCTTAGAGGATATGTATTGGATGACTTCAAATATGGGT
TAAAAAAAACATTTTCAAAATGTGAGATTTTCCGAGTCGTACCACACTGC
AAGCCCTTGGTTAAAAATTGTCATCTATTGTGCGAGATCTTAGAAAAGCT
TGCTTTAATAAGCTGCTTTTTTCGAAAAAGCAAAATAACTCTCAAGTGTG
ACACACAATTAATTTCATAGACAATCCTAGGAACACTTAATTTAATTGCC
ATAGTTGTGTACAGGGTGTCCCTGATAAAAGTATCGAGTTTGAACATGCG
ATTGAGTAAAAAAGTTTGTGTGTGTTATCGCTAAAATATAAGAACGTTCT
CCATCACATAGGTTCATTACAAAAGGTAGGTACAACGTATAAATTAATCG
TAATGACAAAGAAAAAAGAGGGAGAGCTTAAAATACAATTTTGTGAATAC
ACACTTAAAACTTTCTACTCAATCGCATGTTCAAACTCGATACTTTTATT
AGGGACACCCTGTATGTTTTGTGTATATAAATTACACTAAAATTCACTAG
TAAATGATAAATGGTGTATATAAAAATTCAAAAGCTAAAAATATTTTCCT
AAACTGTTTGTTCGAATTATCTTTGATATGTGTAATTACCCGGGGGGGGG
TACTAGGGTTGCGAGCTGACGGGTGGGTGCCGCCCGACTTTCGAACTTTG
GACCCTTACCGGGACTAAAAAGTAGAAAACAAAGGAAAATTTTGGGAATT
TTACGACCCTTAGCGGGACTAATTTGACCAATTTGGACCAAATTTTGATC
TTTCAGGGGGTAAAAAGTTGAAATTTTCCTATTTTTCCGACCCTTACTGG
GACTGAAATTTGATTTTCTGATTTTTCCGACCCTTAGCGGGACTTTGGAA
GTCCAAAAAAGGTACCCTTAAGGGCGGCACATACCGTACCCTCCATTTGC
CTAAGTACCCCCCCCCGGGTGTAATTATCAATGTAACTTTTCAGTATTCT
TCAAAATCTCATGTTTCCATTTTCAATATACTCTTGAAGTTCTGCATCAA
GAATTACGTAATCTTTCTTGGTGACGTCATAGACATAAATAACATCATCT
TTATTGCAGCTCTTTAAATCATATTTTTCTTTCTTCAAGGCGCTCTTTTG
ATATTTGAAGGTACCAGTTTGATCAAGACTTCGGCCAATACGAATGAACA
TTGGAATTGCATATTTTGGCAATTCTTCCAACAGACTTTGAGCGACACCT
TTGATTGAAAATTGTTGGTTTTCTTTTTCTCGAATGTAAGCCATGCCAGC
ATTCCCTCCTTCTCCTGGTATAGGTACTGGATAAACGACCACATCTTCAG
CAGTGCTGATTACAGATGACATGATATTTTCCACTTCAGTTGTGGCAACA
TTCTCACCTCTCCAACGGAAGGTATCGCCAATCCGGTCTGCAAAATAGAT
ATTACGATACTCATCCATGACCAACAGATCACCAGATTTAAAAGCAGAAT
CTCCTTCCTTAAAGACATTGTAAGCTATCTTTTTATTGGTCTCGCTAGAA
TTATTTACATAACCATCATATGAGAGAATTTTGTTGATAACAGCAATCAA
TGCACCAACTTCACCAGGTTTGCAAAGGATAGCTCGACCATTCTCATCCC
TGACAATCTCACCAGTTTCAACATCTGCTTTAACCAAACAATTCTGATTC
AAAAACGGAAACAAAAAATAGTAGAATCCAACAGCTCCAGGGACGTTATC
GACGTTTAAGAGGACGGAGTTCCCCTCAGTAGCTCCGTACAACTCAGCAA
TCTTATTGATACCAAACCTTTCTTTCACCAAAGGCGCCATGTTCTTTCTC
AGCCCATTACCAAGGATCATTCGAATCTTATGTTGACGATCTGTATCTCT
TACTGGTTGCGACAACAAATATTTCCATAATTCCCCGACATAGCCAACCC
ATGTCACATCATACTTGATACATTCAAGAATAAATTTGGAGGCACTAAAC
TTCTTTCGAATGACAGTGGTACATCCTTTATACAAGAGAGGACTCATAGC
CAAAGCTCCTCCAGTACCGTGATATAAAGGTAAACTATTATAAACAATGT
CGTCTGGACTTGTCATAACAAACTCATTTGAAACACAAACTTTGACGAAT
TTTCCGCATTTAACTTTGGCTGCTTTTGGGAATCCAGTACTACCAGAGGT
GTACATTAGAAGGCAAACATCGTTAGCTTTCATATCCAAGCCCTCAATTG
CAGCCGAATCTTTCTGCTCTTTGATCAGTTCTTTCAGATCCTTGTAATCT
CCTTCATAAGAGTCATCACCAAAAATAAAAATCTCGACACCAGAGTTTTC
GTGGAAATCAATGTTTTTAATAGCCGTCATCAGTTCTGGAGCGCAAATAA
CAGCTTTGTATTCAACAAGAGTTAAACAGTGATTCAAACTTTTACCTTGA
AGGTTATAATTAATCAAACCAACTTTGATACCAACTTTGTTCAATCCTAG
CCATATGGGCACGTACTCCAACTCATTTCCAAGGAATAGCGCAATTTTAT
CTCCTGGTTTATAACCAGACTTATTAAAAACACGACCAATTTTGTTGATA
AAATTTTGAATTTCGTTGAAAGTTAAAGATCGTCCTGTTTCAGCGTCGAT
AAGGGCTTTTTTGTTTGGAAGTTGTTCAGCCTTTTCAGATAAANGATCGT
CCTGTTTCAGCGTCGATAAGGGCTTTTTTGTTTGGAAGTTGTTCAGCCTT
TTCGGATAAGAACTGGTTCGGTGATTTTTCTTTGTTTTTCAACATATTTG
GAACAACTCTGGTCAAAGTAATAAAGAACCAATAACAATCTCTGATGATA
ATTCGTTTAGCGAAAGCCAAATCTTTCAAACCATCAGTGAAATAGACAAG
ACTGCTGACCAATATGAACGACATCTTGATTCCAAGTATTGAATAGAAGT
AATAAAGTAATGACACATAGCCAAATACTTTCCATGGATCACACGGAGCC
ATTTTGATTCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041577XLOC_041577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066460-exon-scaffold_455-1575043694:439165..439695TCONS_00066460-exon-scaffold_455-1575043694:439165..439695Clytia hemisphaericaexon
TCONS_00066460-exon-scaffold_455-1575043694:433582..434083TCONS_00066460-exon-scaffold_455-1575043694:433582..434083Clytia hemisphaericaexon
TCONS_00066460-exon-scaffold_455-1510915933:439165..439695TCONS_00066460-exon-scaffold_455-1510915933:439165..439695Clytia hemisphaericaexon
TCONS_00066460-exon-scaffold_455-1510915933:433582..434083TCONS_00066460-exon-scaffold_455-1510915933:433582..434083Clytia hemisphaericaexon
TCONS_00066460-exon-scaffold_455-1491911889:439165..439695TCONS_00066460-exon-scaffold_455-1491911889:439165..439695Clytia hemisphaericaexon
TCONS_00066460-exon-scaffold_455-1491911889:433582..434083TCONS_00066460-exon-scaffold_455-1491911889:433582..434083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:433582..439695 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0694672	0.125189	0.0673806	0	0.0568372	1.18933	0	0.51542	1.32743	0	0	0	0	0	0	0	0	0.388939	0	0	0	0	0.146456	0	0
Blast
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BLAST of TCONS_00066460 vs. Swiss-Prot (Human)
Match: S27A1 (Long-chain fatty acid transport protein 1 OS=Homo sapiens GN=SLC27A1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.358e-27
Identity = 65/208 (31.25%), Postives = 107/208 (51.44%), Query Frame = -2 
Query:   85 EQLPNKKALIDAETGRSLTFNEIQNFINKIGRVFNKSGYKPGDKIALFLGNELEYVPIWLGLNKVGIQVGKINYNLHGKSLEHCLSIVDYRAVICAPDFVKTLENISFHEKSVVXXXXXXXXXXXXGYKD---LNGLIKDEQDSTAVEGLDMKPNDFSILQYTSGSTGFPKAVAGKSGKFVKFCVF-HEIMMTKSDDIVYNCLPLYHT 696
            ++ P + AL+DA TG   TF ++  + N +  +F + G+ PGD +A+FL    E+V +WLGL K G++   +N NL  + L  CL     +A+I   + V  +  +S H    +  F  G+   EG   D   L+ L+K+   +   +      +D     YTSG+TG PKA      ++ +   F H     ++ D++Y+CLPLYH+
Sbjct:   87 QRQPERLALVDAGTGECWTFAQLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREPLAFCLGTSGAKALIFGGEMVAAVAEVSGHLGKSLIKFCSGDLGPEGILPDTHLLDPLLKEASTAPLAQIPSKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQAADVLYDCLPLYHS 294
The following BLAST results are available for this feature:
BLAST of TCONS_00066460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S27A12.358e-2731.25Long-chain fatty acid transport protein 1 OS=Homo ... [more]
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