TCONS_00066452 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066452
Unique NameTCONS_00066452
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1931

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066452 ID=TCONS_00066452|Name=TCONS_00066452|organism=Clytia hemisphaerica|type=transcript|length=1931bp
aaaaacaCCTCCCGGATTATTGACGTTGTGTTGATTGGTTACTGCTCATT
ATCCAATCAACGAATTCGAAGCGGCCTGTTcaaaatattcataaaaatcG
GGCTGTCATAATCAAAATACGTTGCTTGTGTGTACATTGACCTTGTACAT
CAAAAACCTGTGAAGAATTACCTTACTGAACCTTCAAACCATCATAAAAA
TGGCTGCATTACACAGACGAGCACTTGACAACCTCCGAAGTGAGAATGCA
ACATTAAAACAAGGACAAGTTAAAGCAACCAAAAACACTTTAAATCGACC
AGCTCTTGCAAATATTTCTAATATTCAACGAAGACCTGCACTAGGAACCA
AGAAGGATGAAcataaagagataacaaaaGGTCTCACTAGACATAAGGCA
TCAACACATCTCACAGCTACTGAGAAAAAGGATGTCTTCATTTTCCAAGA
TGATAGTGAAGAAGAAACAAAGCAATTTGAGAATGATCAAATAGCAAAAC
TGACAGAACAAATGGCAGAGATTGATGTTGAAGATATTGATGCTGATGAT
TTGACCAACCCCTCACTCTGTGcagaatatgttaaagatatctACAAATA
TATGCATGTCCTTGAGaaaaaacttcaaCCTAAAGATTACATGTCACGTC
AAACGAATATCAATAAAAAGATGAGAAGCATTTTGGTTGACTGGCTCATT
CAAGTACAATCCAGATTTAGACTCCTCCAAGAAACTTTATATTTGACAAT
CTACACAATCGACAGATTTCTTGCTAAATGTGATGTCAGTCGATCAGAAC
TTCAACTGGTTGGTGTGACAGCTATGCTTATTGCATCCAAATATGAAGAA
ATGTATGCTCCCGAAATCGGTGACTTTGTTTACATCACAGACAATGCATA
TTCCAAGGTGAAAATCAGAGCAATGGAACAGAAAATGTTGAAAGCTTGTG
AATTCGACTTCAGCAACCCACTTGCCCTGCATTTCCTGAGAAGAAATTCA
AAGGCTGGAGCTGTTGATGCCACAAAACACACAATGGCAAAATATTTAAT
GGAATTAACACTAGTTGACTATGATATGGCAACTTTGTTACCGTCACAAA
TCGCTGCAGCTGCCAGCTACTTATCCACACAATTACTGGACAAAGAGAAA
GCTGAATGGaCTCCAACGTTAGCACACTATAGCACTTATTCAGAAGCAGC
CATCTTCCCAATCGTTTGTCAAATGGCTAAGCTTGTGTTGACCATGAACA
TGGAAGGTTCGAAATATCAAGCAGTCAAAAGTAAATACGCTGAAagcaaa
tttatgaaaattagcCGATACCCTGTACTGGTTGGACCTTACATGCGCGA
ATTGGCAGACCAAGTCGACAATGCTTGAACCTTAAGATACTGGGATGGAT
TTTAAATGAGCTTTTTTATTTATGGAAATTGCTTTAACAGATCTCAGCAG
ATCTTCAGTTTTATTTTGAGAAGAGGGGTAAGTATTTCACTCCTTGGAAG
TAGTGGGCACTTAAACATAACTCTAAACGTCAAACTTAGTCTCTATGACA
CTTTGTTGTATATTTTGTACATCCAATATGAATCCGATAATTGACAATTA
CTGAACTCAAACATTAAATCATTCTTGCTAAATAAATACGGCCCATTTTC
ACCTTTCTGTTGGCCTGGCTGCACTTGGTATTACTTAGTATTTAACAAAA
ATGTAAATATGATATAAAAGTTCAGGTAGTATTTTTTATCCGTATGATGA
ACACCTTTTGTAAATAGATTCTtttgaaaacatattttattgaaagaaaa
ataacacaaattaaaatttgataatattCAGCATTTGCTTAATTTAGTCC
ATGTTTCACAGAATGTAGTTGCCCCACGGGGAAGCAGTTAACGTCCACAC
TTCAGACAGgcaatatcaaaattcattgccg
Run BLAST on NCBI

transcript from alignment at scaffold_455:134235..138830-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066452 ID=TCONS_00066452|Name=TCONS_00066452|organism=Clytia hemisphaerica|type=transcript|length=4596bp|location=Sequence derived from alignment at scaffold_455:134235..138830- (Clytia hemisphaerica)
AAAAACACCTCCCGGATTATTGACGTTGTGTTGATTGGTTACTGCTCATT
ATCCAATCAACGAATTCGAAGCGGCCTGTTCAAAATATTCATAAAAATCG
GGCTGTCATAATCAAAATACGTTGCTTGTGTGTACATTGACCTTGTACAT
CAAAAACCTGTGAAGAATTACCTTACTGAACCTTCAAACCATCATAAAAA
TGGCTGCATTACACAGACGAGCACTTGTAAGTAGATACATTTAACTTTTT
GATGCACGATTTTTGACGTTTCATAGAATTTTTTATTAGTTCCAGAGCTA
TTGTATGTTTGTTCTATCATATTTGAAAATATCTGAGTTGTACACTCTAT
TTGTCTAATTATGGAAACAAATGGCATTAGTCTCACCTACCTAGTGTTTC
AAGATCCGAACTTAACAGTGTAAAATGTTTTTTGAATATGTCCATTTTAT
TAAATAAAGGTTGGGATCAGGCTGGATCTTGACCTGAATTTTGTTGCCGG
CTCGTAAAAAATATTTTATAGTTCCTGTCACCTGATCAACCCTGATTTTC
AGCCCTGGGTTGGGGGGTACTAGGTATTTTTACGGTACACATGTATTTTT
ACAACCGCTGCAATGCAAACAGAGCAATTTTTTGGATGGCTGCCTAAGAG
ATGTTGAATACCATGTGATCAACTATTGCCAAAAACAGCAATTTTCATTT
ATTTTCTGCTGACTTTGCATTTCGTCGTAAAGTATTTCCCTCTTCGGCAA
CATTATTTGCTGATAAAAGAGCAATTTAAATGATATTTTTGTCTAAAACA
GTGACTCTAAAATACTCCACGGTAAGGTTTGGTTAGCTGTATATTGACAT
TTCCAACACTTTCTTACCTGGAGAGAATATATTTGAATAATTTATTTTCC
AGGACAACCTCCGAAGTGAGAATGCAACATTAAAACAAGGACAAGTTAAA
GCAACCAAAAACACTTTAAATCGACCAGCTCTTGCAAATATTTCTAATAT
TCAACGAAGACCTGCACTAGGAACCAAGAAGGTATGTATTTCAAAATATA
TTTCACTTCTCAAATTATGTAAATTAACACATAGTGTTAGTTTATATACC
TTCAGAAAAGTTGAAGAAGGGGGGGGGGGGGGGGGGCAAAAATTTTTTTT
AAAAAGGGGGGGGGGGAGGGGGGGGGGGGGGGATGGGGGGGGGGGGGGGG
GGGGGGGGTCAGAAATCTTTATGAAAAAGGGGGGATAGCAAGGAAGGGGG
GACAGTTTAAGAAGGGGGGCTTACATATATATTGTAGAATATTTTCAAGC
ATTGGTTATAAAATTTGGTTAGGGGATGCCAAGAAGGGGATCAGACCCCT
TTCCGCACTTATGTAAGATAATGTTCGACAAACAGTTTCATACTATTCCA
TTAATTGAATCATGACCAAAAGGGACATTTCACCCAGTTCTGCCCAGTTG
ACAAAGTAAATTCTTTCACTTTGACAATTGCACAGTTTCTATGAAACATG
TCAGGCCATTTTCTAGAAAGACAAGGAAGCGTCAGCTTGGAACCAAAAAG
GGCACTTTTTCTGGTGATTTTCTAACAAAACTAATTACTACTAATTTCCA
CATATTTGTAACTTTTTGTTGGGGCAGCGTCTGATAATCGGACCCTTAAA
AGGCATAAAAAATGTTATAAAACTCTTCAGTGATTGCCTTTCCATTATTA
AAGCTTGAATATTTGGACGGGTCACAGGCAAGAAGCAACAAAAATTATAT
AAAAAAATAAAAAATGGCCTGCATGATTTATAAGACAGTGCTTGATTGAA
ATTGTCTTAACTCTTTTTTTCAGAAGGATGAACATAAAGAGATAACAAAA
GGTCTCACTAGACATAAGGCATCAACACATCTCACAGCTACTGAGAAAAA
GGATGTCTTCATTTTCCAAGATGATAGTGAAGAAGAAACAAAGCAATTTG
AGAATGATCAAATAGCAAAACTGACAGAACAAATGGCAGAGATTGATGTT
GAAGATATTGATGCTGATGATTTGACCAACCCCTCACTCTGTGCAGAATA
TGTTAAAGATATCTACAAATATATGCATGTCCTTGAGGTAAGTATTTTAC
TATATGCACCCTTCACAAGATTCTAAATGAATTGCTGTTAAGAATTATTG
TTCTATGTGACTATTCAAGTGATTCAAAGGACATGAAATTCTTAATATGT
TACCTTCAAATTGCTGGCTTTTTTCTTTGTTATCAGCAAAGTGTTCAATG
GGCAAGCCTATTTTCTTTAAATACGATTTTGACGTCAAACTGTCTTCCAC
CTTCTGGTTGCAATTGATGGATTGCCTGGCTGAATAAAAGTATTGCCAGT
AAGATGCTGATAGATTTGCTTGTATTAGTTGGAAGAATTCTTCACGTGGT
TAAAATCCCTTGGAGATTCAAATCATATAACTTTATTGCTTGCCAGTCTT
ATATTTTGGTTATCTAATTTTTCAGAAAAAACTTCAACCTAAAGATTACA
TGTCACGTCAAACGAATATCAATAAAAAGATGAGAAGCATTTTGGTTGAC
TGGCTCATTCAAGTACAATCCAGATTTAGACTCCTCCAAGAAACTTTATA
TTTGACAATCTACACAATCGACAGATTTCTTGCTGTAAGTCTATTTTTTC
TTCATAAGTTGCATAGCAAGTGCCCAAAAACAATTCCAAAGTTAATTCAA
AAAGATAATTTTATTGCTTGTATTTTGTACATTAAACTCTATGTTAAGAA
CGGAAGTTGAATTGGATCAAACATTGTGTTTATAGATAATATCTTTCAAG
CTTTTTTACTTAAAATCCCTTTCCATATTATCATATTATCNGCATTTTGG
TTGACTGGCTCATTCAAGTACAATCCAGATTTAGACTCCTCCAAGAAACT
TTATATTTGACAATCTACACAATCGACAGATTTCTTGCTGTAAGTCTATT
TTTTCTTCATAAGTTGCATAGCAAGTGCCCAAAAACAATTCCAAAGTTAA
TTCAAAAGATAATTTTATTGCTTGTATTTTGTACATTAAACTCTATGTTA
AGAACAGAAGTTGAATTAAATCAAACATTGTGTTTATAGATAATATCTTT
CAAGCTTTTTTACTTAAAATTCCTTCCCCATATTATTAGAAATGTGATGT
CAGTCGATCAGAACTTCAACTGGTTGGTGTGACAGCTATGCTTATTGCAT
CCAAATATGAAGAAATGTATGCTCCCGAAATCGGTGACTTTGTTTACATC
ACAGACAATGCATATTCCAAGGTGAAAATCAGAGCAATGGAACAGAAAAT
GTTGAAAGCTTGTGAATTCGACTTCAGCAACCCACTTGCCCTGCATTTCC
TGAGAAGAAATTCAAAGGCTGGAGCTGTAAGTATATAGTATAGATTTGCT
TGATATACATGAACTCAGGCATTATATTGTCCTACTGGAGACGGTCATAG
TTTTCTTAACAACGTAATAAAGTCCATACATTTTCTCAACTTTTCTTTTC
ACAACAAACAGGTTGATGCCACAAAACACACAATGGCAAAATATTTAATG
GAATTAACACTAGTTGACTATGATATGGCAACTTTGTTACCGTCACAAAT
CGCTGCAGCTGCCAGCTACTTATCCACACAATTACTGGACAAAGAGAAAG
CTGAATGGGTAAGACTTTCCTTTTCCATTTTAGAGCAGCGTTTCTTGTTT
TTCCCACAGGGGCAAACCTGGAAACCAAACTGCTACAGGTCCAAGGTCTA
AGTCGGGCATAAATTGATTTTCACAATAGTCGATTATTTCAATGTGATAT
TACAAATCTTTATTTTCTTTATAGACTCCAACGTTAGCACACTATAGCAC
TTATTCAGAAGCAGCCATCTTCCCAATCGTTTGTCAAATGGCTAAGCTTG
TGTTGACCATGAACATGGAAGGTTCGAAATATCAAGCAGTCAAAAGTAAA
TACGCTGAAAGCAAATTTATGAAAATTAGCCGATACCCTGTACTGGTTGG
ACCTTACATGCGCGAATTGGCAGACCAAGTCGACAATGCTTGAACCTTAA
GATACTGGGATGGATTTTAAATGAGCTTTTTTATTTATGGAAATTGCTTT
AACAGATCTCAGCAGATCTTCAGTTTTATTTTGAGAAGAGGGGTAAGTAT
TTCACTCCTTGGAAGTAGTGGGCACTTAAACATAACTCTAAACGTCAAAC
TTAGTCTCTATGACACTTTGTTGTATATTTTGTACATCCAATATGAATCC
GATAATTGACAATTACTGAACTCAAACATTAAATCATTCTTGCTAAATAA
ATACGGCCCATTTTCACCTTTCTGTTGGCCTGGCTGCACTTGGTATTACT
TAGTATTTAACAAAAATGTAAATATGATATAAAAGTTCAGGTAGTATTTT
TTATCCGTATGATGAACACCTTTTGTAAATAGATTCTTTTGAAAACATAT
TTTATTGAAAGAAAAATAACACAAATTAAAATTTGATAATATTCAGCATT
TGCTTAATTTAGTCCATGTTTCACAGAATGTAGTTGCCCCACGGGGAAGC
AGTTAACGTCCACACTTCAGACAGGCAATATCAAAATTCATTGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041572XLOC_041572Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066452-exon-scaffold_455-1575043694:138605..138830TCONS_00066452-exon-scaffold_455-1575043694:138605..138830Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1575043694:137800..137928TCONS_00066452-exon-scaffold_455-1575043694:137800..137928Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1575043694:136744..137004TCONS_00066452-exon-scaffold_455-1575043694:136744..137004Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1575043694:136197..136355TCONS_00066452-exon-scaffold_455-1575043694:136197..136355Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1575043694:135455..135691TCONS_00066452-exon-scaffold_455-1575043694:135455..135691Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1575043694:135173..135319TCONS_00066452-exon-scaffold_455-1575043694:135173..135319Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1575043694:134235..135006TCONS_00066452-exon-scaffold_455-1575043694:134235..135006Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1510915933:138605..138830TCONS_00066452-exon-scaffold_455-1510915933:138605..138830Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1510915933:137800..137928TCONS_00066452-exon-scaffold_455-1510915933:137800..137928Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1510915933:136744..137004TCONS_00066452-exon-scaffold_455-1510915933:136744..137004Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1510915933:136197..136355TCONS_00066452-exon-scaffold_455-1510915933:136197..136355Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1510915933:135455..135691TCONS_00066452-exon-scaffold_455-1510915933:135455..135691Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1510915933:135173..135319TCONS_00066452-exon-scaffold_455-1510915933:135173..135319Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1510915933:134235..135006TCONS_00066452-exon-scaffold_455-1510915933:134235..135006Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1491911889:138605..138830TCONS_00066452-exon-scaffold_455-1491911889:138605..138830Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1491911889:137800..137928TCONS_00066452-exon-scaffold_455-1491911889:137800..137928Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1491911889:136744..137004TCONS_00066452-exon-scaffold_455-1491911889:136744..137004Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1491911889:136197..136355TCONS_00066452-exon-scaffold_455-1491911889:136197..136355Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1491911889:135455..135691TCONS_00066452-exon-scaffold_455-1491911889:135455..135691Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1491911889:135173..135319TCONS_00066452-exon-scaffold_455-1491911889:135173..135319Clytia hemisphaericaexon
TCONS_00066452-exon-scaffold_455-1491911889:134235..135006TCONS_00066452-exon-scaffold_455-1491911889:134235..135006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:134235..138830 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.09175	5.92224	10.1836	14.8789	10.8863	8.67748	4.27083	4.85735	3.95656	3.40097	5.1827	1.42602	1.53214	2.47268	0.987942	1.40748	2.84539	2.12545	0	0	1.85149	0.759119	20.8557	13.6235	12.8063	7.65876	1.10974	0.879953	16.1665	7.95442
Blast
[Close]
BLAST of TCONS_00066452 vs. Swiss-Prot (Human)
Match: CCNB1 (G2/mitotic-specific cyclin-B1 OS=Homo sapiens GN=CCNB1 PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.435e-92
Identity = 146/272 (53.68%), Postives = 193/272 (70.96%), Query Frame = 2 
Query:  557 NPSLCAEYVKDIYKYMHVLEKK--LQPKDYMSRQTNINKKMRSILVDWLIQVQSRFRLLQETLYLTIYTIDRFLAKCDVSRSELQLVGVTAMLIASKYEEMYAPEIGDFVYITDNAYSKVKIRAMEQKMLKACEFDFSNPLALHFLRRNSKAGAVDATKHTMAKYLMELTLVDYDMATLLPSQIAAAASYLSTQLLDKEKAEWTPTLAHYSTYSEAAIFPIVCQMAKLVLTMNMEGSKYQAVKSKYAESKFMKISRYPVLVGPYMRELADQV 1366
            +P+LC+EYVKDIY Y+  LE++  ++PK  + R+   N  MR+IL+DWL+QVQ +FRLLQET+Y+T+  IDRF+    V +  LQLVGVTAM IASKYEEMY PEIGDF ++TDN Y+K +IR ME K+L+A  F    PL LHFLRR SK G VD  +HT+AKYLMELT++DYDM    PSQIAA A  L+ ++LD    EWTPTL HY +Y+E ++ P++  +AK V+ +N   +K+  VK+KYA SK  KIS  P L    +++LA  V
Sbjct:  163 DPNLCSEYVKDIYAYLRQLEEEQAVRPKYLLGREVTGN--MRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFCLALKILD--NGEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYATSKHAKISTLPQLNSALVQDLAKAV 430
The following BLAST results are available for this feature:
BLAST of TCONS_00066452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCNB11.435e-9253.68G2/mitotic-specific cyclin-B1 OS=Homo sapiens GN=C... [more]
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