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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066450 ID=TCONS_00066450|Name=TCONS_00066450|organism=Clytia hemisphaerica|type=transcript|length=492bp
TCCTCAAACAGCCAACAAAGTGGAACAGATGAAGAAATAATTGTTGCTGA
TGTTATTGAAAGTGATGACGAACAACAGACTGTTGATGTCACTGGTGGTC
TAAACTAGAACCTGAACCTGATGATGGCGATGCTCTTCTTCAGCACGATA
CATAGAATGTTTGATGATCAAATGTACTCTACAACATTGGGGAAAGCATT
GAGCACAGTCATCTaaCTGCTGATAGTGAAAGAACATTGACTGAGAGTGA
AAGAACATCGGCAGCATTAAACTTGTCAACACACATGATGAAGGAAAAAT
GAGTGGGTTTTTACAGAAATGGCGATGAATGTGTCAAGGAAATTTATTCA
GACAGATAGAGGGAATCAGAATCAAGTGATGAAGAAAAACCTGCACTAAA
TGTAGCATCCTTGATGGTGGACAAATAAGTGACTGATAATGAATATGACA
AGGATATTGATACATACACAGATACTGAAACAGAATCGGAAA Run BLAST on NCBI transcript from alignment at scaffold_455:52874..57657- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066450 ID=TCONS_00066450|Name=TCONS_00066450|organism=Clytia hemisphaerica|type=transcript|length=4784bp|location=Sequence derived from alignment at scaffold_455:52874..57657- (Clytia hemisphaerica)
TCCTCAAACAGCCAACAAAGTGGAACAGATGAAGAAATAATTGTTGCTGA
TGTTATTGAAAGTGATGACGAACAACAGACTGTTGATGTCACTGGTGGTC
TAAACTAGAACCTGAACCTGATGATGGCGATGCTCTTCTTCAGCACGATA
CATAGTGAGTGATTCTTATAAATCCCTAAATTGCAGTAGCAATTTTTACT
GCAATTGCGGTTTAAAAATCGCTTTTAAATTTTTCACATACCCAGGCAGT
GAGTGTCAATTGAACTGTTCGATTATCTAACCAATCGAACATCGAACGAT
AGCTGTTCGATTACCGAACCCAATCGAACACCTACCGGGTGAGATCGGGT
AACTTGCATCAGTGGAGGCTAACGTGCATAGCCCTCAAATGAATGACCAG
GCTGGTCATTAAAATACAACTACGCAGCTCCGCTCGCAGCTCTACTCTAC
CATTTTTGTTTTGATTTAACTTTGTATTTTAATGACAAGCCAGGTCATTT
ATTTGAGGTCTATGCATGTTAGCCTCCACTGATGTAAGTTACCCGATCTC
ATGGTATCGAAACTGCAAAAACTTTTGTAAAGTTTGATGACTGTTCCATA
GACCTTTTTGCCTTTCCATCCACTATATTGAATTGTAAGCTAAAATTATG
GTGGCAGAATTGCCGTGGCCAGACGATCTGGTTGGCAGGGGATATCATAC
TCCAGGATGCAAGTGAAATTTTTCAATCCGCGGACCTAGACGGGGGTTCG
GTTATTATCAGTTAGGGTTAGGGTTGGAGCTCGAGAGTTACAATATAAGG
CTGAAGGTTTCTTAGGGGCATTCGTACCCTGTGACTTAACTTAGGATTCC
GTAGGGATCCTTGTAGGGGCACTGGTAGGGTTGGGAGCTTTCTTAATTGA
GGTCTGTAAATTACACGCTATAAGTATTTGTGAATGACAATATTCTGTCG
TGTCTCGTTGGCGTAAGCGGTTAGGCGTTGGGTTTGTAAACCAATGTTGC
TTGCATTTGGTGGCTCGAGCTGGGGTCGGAGACCTGTTTCACTGGTACGG
GCAAATTTCAGAAAAACAGTTAGACACAATTGAGAAAGACAGAAAATCAG
GATAGTAGATAGGAAAGTAGAAAATAGGGGGAAAATAAGAGACGATGCAT
CCTGGAGTATGATATCGTTTGCCAACCAGACAATCTCAATCGAACGGAAT
TGAAATCGAACCGTTTGAAATCGAACCGTTTGAAATTCGATTGTCAAACG
CAATCGAATCTCAATCGAACGTCAAAATTCTGGGTGATACAGAGGGGGGG
GTCATGCAGTTATTATATAAACACTATGACAATTACTACCGTGGTGGTAT
ATAAACCAAAATTTGGGAAAACAGTTACTCCACCAGTGGACTAACTGCAA
CATGGGTGGTGCCTAAGCCCAAAATTGTCGATTTTGGTAGGATATAGTGT
ACTAAGTGAGCACATTTTTCAATTTTTCACTTAAAATTTTAGGTTTTTAA
AAATTCCGGAACTAAAAAAATTCAAAACATTTTTTTCAAAAATCAAAAAA
AAATCACAAAATGTTTTCTTCAATCAAGGCATGAAAGATATTTTAACAAA
CTTGGAAAATGATTGAGATATTTAACTCTAGAACATTCGTTAATAAGACG
TACCCAGTAAAATGGTATCAAAAATGAGGAATTCAGTGAAAAAATTGCCA
AATTTGGCATTTTTGGGGGTGGTATACACCAATTTTGAGGGTAAAATCAG
TANATGGAATAACTGCAAGGGTGGTGGTGTCTGTAGAAAATGTCCAAAAT
TGCAGTTACTCCACATAGTGTCAAGGAGTAACTGCAAGACCCCCCCCCCT
GGGTGATATTCGATTGGTTCGATTGTTGTTGGACTGGTTCGATTGTTGTT
GTTGATTGTCGTTGTTGTCGGGAAACGTCGCCCGGTTCGAAAGCGTATTG
TTGATCGGGCCATACTGCTTTCTAACCGTCAAAACAAAGATGGCAGCAAA
AAATAGACAATCAGCTCCAGACGATCTCAATCGAACGCAATGGAACATCA
ATCAAACGCAATCAAATATCAATCGAATCTCAAAATTGCGGTAATATTTG
ATTGAGATTCGATTGCGTTCGACAATCGAATTTCAATCGGTCGATTGCGT
TCTCGATTTGGTTCGACTGGTTCCATTGTCGATTCCGTTCGATTGAGATT
GTCTGGCCGTGGTGAAATTCCCTTAGAAAGTATGCAAAACATATGCAAAA
AGGAAGTATTAATATAAAACTTACATGCATAATTGGCATTATATTAAAGT
AATCTTGTTGAAGAAAGATTGAAAATTTGCTTCTCTTGAAATCTAAAAAT
TTAAAACGGCAATTCGGCCACCATTTCACTGAACCTCCAAAGTCATTTGA
TTTGAGTTAAGGAACGGCGTATTTAAAAATACACGATTTCACTTTCAATT
TTACAGTAAGTGAACATACAGACCAGATATGCCACAGTCCCATGTTTCGA
CCAATTGTCCCAAGTTAGAGCAGTCGACGGTACCCAAATCAAAACAACAT
TTTACACGCAAAGAATTTTTTAGTAGACCTTTTTACCGAGAACTGAAAAT
AATAAAAAGAACCCAGTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAAGTGTCATCTGATCCTTAAAATGCAAAAATGAAG
ACATTCTATTGCATTCTCTAAAAGTGCACACACATGTAAATAGAGCTTTG
CGAATGCCATAAAATCTTTCCCCTATACTGGGACCTAAAATTTCATCAGG
CTGGGGGGGACCTTGTTCTCAGGGGGGACCTAAATTTGGCGGGGGGACCT
AGAACCCCAGTCGGAGCCATGCTGATAACCCATGGACAAAAATTTCATAA
ATTGCCAAAATAAAAAAAAATTCTGTCCGACCAACCCACCTCCACAATCT
AGGGTCAGGTGATGGCAAACCAACAATTATTTAAGCCCAGCCCCAGCTAG
ATCTATATCGATTCTTTTTTTAAATTGAAGCAAATTATTGGTCCTGCTTT
TATATATCAACACAACTCATTGTTGGTGCATTTTTATGTGAATAAAACTT
GAGTTCACATTTTTGTCTGATTGTATGTTTGATGGCTTTTTGAAAGGAAC
TTATGTTCAAGAGTAGCTTTTTTAAAAGCTATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNACTAATTTTTCATAGGAATGTTT
GATGATCAAATGTACTCTACAACATTGGGGAAAGCATTGAGCACAGTCAT
CTGTGAGTATAACCTTTTTAAACTGAAGCTCTATTACTACACATTTTAAT
GGGACTGCTGTAAACAACGTCACTTCTCAGAGCTAAATGAATTAAAAAAA
ATTTCTAGCTATTTTCACTGAAAAGTATGAATTCTGGCCCAAATACTTTT
AAAAGGCTTTTTCGTGAAGGTGAATGCCTCTTTATTATATTAAGAATTCT
TAACAAATTGCAAGAGTTTATGCTTGTATTCTCAGATTCAATTTTTTTTT
AAATTTGAAAATCTTTGAAGCTGTGAAATCAAAATATAAAATGTCGCTAG
TAGTAAAATCAATCATTGCCTTAATTTTAAGACTGACATTTTTAAACATT
TTTTAGAACTGCTGATAGTGAAAGAACATTGACTGAGAGTGAAAGAACAT
CGGCAGCATTAAACTTGTCAACACACATGATGAAGGAAAAATGAGTGGGT
TTTTACAGAAATGGCGATGAATGTGTCAAGGAAATTTATTCAGACAGATA
GAGGGAATCAGAATCAAGTGATGAAGAAAAACCTGCACTAAATGTAGCAT
CCTTGATGGTGGACAAATAAGTGACTGATAATGAATATGACAAGGATATT
GATACATACACAGATACTGAAACAGAATCGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066450-exon-scaffold_455-1575043694:57504..57657 | TCONS_00066450-exon-scaffold_455-1575043694:57504..57657 | Clytia hemisphaerica | exon |
| TCONS_00066450-exon-scaffold_455-1575043694:53506..53565 | TCONS_00066450-exon-scaffold_455-1575043694:53506..53565 | Clytia hemisphaerica | exon |
| TCONS_00066450-exon-scaffold_455-1575043694:52874..53151 | TCONS_00066450-exon-scaffold_455-1575043694:52874..53151 | Clytia hemisphaerica | exon |
| TCONS_00066450-exon-scaffold_455-1510915933:57504..57657 | TCONS_00066450-exon-scaffold_455-1510915933:57504..57657 | Clytia hemisphaerica | exon |
| TCONS_00066450-exon-scaffold_455-1510915933:53506..53565 | TCONS_00066450-exon-scaffold_455-1510915933:53506..53565 | Clytia hemisphaerica | exon |
| TCONS_00066450-exon-scaffold_455-1510915933:52874..53151 | TCONS_00066450-exon-scaffold_455-1510915933:52874..53151 | Clytia hemisphaerica | exon |
| TCONS_00066450-exon-scaffold_455-1491911889:57504..57657 | TCONS_00066450-exon-scaffold_455-1491911889:57504..57657 | Clytia hemisphaerica | exon |
| TCONS_00066450-exon-scaffold_455-1491911889:53506..53565 | TCONS_00066450-exon-scaffold_455-1491911889:53506..53565 | Clytia hemisphaerica | exon |
| TCONS_00066450-exon-scaffold_455-1491911889:52874..53151 | TCONS_00066450-exon-scaffold_455-1491911889:52874..53151 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:52874..57657 - |
Blast
The following BLAST results are available for this feature:
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