TCONS_00066446 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066446
Unique Name	TCONS_00066446
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	797

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_455:552788..561347+

transcript sequence

>TCONS_00066446 ID=TCONS_00066446|Name=TCONS_00066446|organism=Clytia hemisphaerica|type=transcript|length=797bp
CTGAAAATCATTTTGCCCAAAATAGGCTGAAGTTTTCCTTTTAATACAAA
ATAGCTTATAAAATttagaattaattttttctgggaAAAGGTAACTTAAA
AAATAACGATATAAAAATGTCTCGTGGTGATTTTGGTGCTGGTGGTGGCT
ATCAACAGAGCTATGGTGGCGGTGGATATGGACAGAGTGAAAGAAATGGG
GATACTGAATACATGAGAATTGCCAACAATGCAAGCAGTAACATCCAACA
ACTCACCAGAAAAAttGCATTAATACAAAAATTGGTCAACCAAATAGGGA
CACCTCAAGATGTCCCTGAAAATTTCGAACGATTGCAAAGTGAACAGAAA
GATTCAAACCTTTTGGTCAAAGAAACTTCAAGTCTTCTACAAAAATTGGG
GAACTTTCAAACAAATGACCCTGGAGAAATGCGACAAAGGAAGATACAAC
AAGATAAACTacatgaaaatttttcaaatgcacTAAACAACTTCCAAAAA
GTTCAACGGCTGGCAGCAGACAAAGAAAGGGAATCACTACAACGAGCAAG
AGCGCAATCTGTTGAATTCAGGGGTGGAAATGACAGTTTTGGTGATGACA
ATTCTCGAATGTATGACAACCAACCACAATTGCAAAGACAAACAGAAGCT
GAACTTAGCCTGGATGAAATCAGGGAACGCGAAGCTGCTATCCGACAATT
AGAGTCTGATATTGTTGATGTAAATgagattttcaaagatttgGCCATCA
TGGTTCACGAACAAGGAGAAACTATCGACAGCATCGAAGCGGACGTC

Run BLAST on NCBI

transcript from alignment at scaffold_455:552788..561347+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066446 ID=TCONS_00066446|Name=TCONS_00066446|organism=Clytia hemisphaerica|type=transcript|length=8560bp|location=Sequence derived from alignment at scaffold_455:552788..561347+ (Clytia hemisphaerica)
CTGAAAATCATTTTGCCCAAAATAGGCTGAAGTTTTCCTTTTAATACAAA
ATAGCTTATAAAATttagaattaattttttctgggaAAAGGTAACTTAAA
AAATAACGATATAAAAATGTCTCGTGGTGATTTTGGTGCTGGTGGTGGCT
ATCAACAGAGCTATGGTGGCGGTGGATATGGACAGAGTAAGTCAAGATTG
CTTCCCTTAAAAAACATAGGGTTATTGTTATTGGAAATTTATCATCCTGT
TTTTTTATACTCTCGCTTTGATAATAAGTGTTTCTTTTGGATACAAGGAT
NCCTGTTTTTTTATACTCTCGCTTTGATAATAAGTGTTTCTTTTAGATAC
AAGGATAACTTGCTCACATCCAAATTCTTCAATtcaaattctatttttaa
aaagcAGTATTAATGAATTTTTAGGTGAAAGAAATGGGGATACTGAATAC
ATGAGAATTGCCAACAATGCAAGCAGTAACATCCAACAACTCACCAGAAA
AAGTTAGTAGATATATTCATCATTTGACTTTAATCttcgattttcatttt
ttttgacgTTGTAGGATTATCACTCATATATCTGTTGTTTACCGGTtatc
gtttttttttctatttagttGCATTAATACAAAAATTGGTCAACCAAATA
GGGACACCTCAAGATGTCCCTGAAAATTTCGAACGATTGTAAGTCCCTTT
GAGTTTTACTGTTATCAAAAAGCAAGCTGGatttgcttgaaattgaaaag
agcTTTTGGAAGTGGAGACTTTCCTATTTTCCTACTTTTTCCTTTGTACA
GTAAGTTTTTGCGGCAGAAAATCAGTGTATTTATTCTTTCCCAATCACCA
TACAACCAACGTACACTAATTTTGTATCATTTCANCATGTGTTTATTCTT
TCCCAATCACCATACAACGTACACTAATTTTGTATCATTTCAATAGTAAG
TAAATGATAAAGTAAAGGCCACTATTTTCTCTTAGATTAAGAGTTTGTTT
TAGCACTATTAACGtatatttaatttttgtgaattttcaaaataatctga
CATATTCTTACAGGCAAAGTGAACAGAAAGATTCAAACCTTTTGGTCAAA
GAAACTTCAAGTCTTCTACAAAAATTGGGGAACTTTCAAACAAATGACCC
TGGAGAAATGGTAACTGTTTATTAGTTTGAAATAGCAAATTTTTGCAGTT
GACTTTGAATCTTGATTGTCCAAATGGTACAAGTACCTTCAACTTTattc
aaattaaatttaattcGATTTACTTTCTATTCCTTCTTTTAGCGACAAAG
GAAGATACAACAAGATAAACTacatgaaaatttttcaaatgcacTAAACA
ACTTCCAAAAAGTTCAACGGGTAAGTTCCGACCATGGAGCAGCTTTTTTC
TGGCTTAAGTCTTTTGTGTCATATTCCATGGTTTTTATGAACTCTCTGCC
TGATCCACACTTGTAATTTTTCATCCCCCCTAACTTGTTCctaagatttt
gaaatttttatttccagCTATTAAAAGAGAACTCCTGAATTCGCCCCTAG
GTAGCCTGGCCTGATTTGCTCTTTGGTTTCCTTATTACGGTTTTTAGAAG
TCTGGTCTCAAGCCCCAACTTTTGTGAATTGAAATTAGAATATTTTTACC
AAATCATCAATAAAAAACCCAACCTTCAACACTTTTTCTTCACTCTCTTT
AGCTGGCAGCAGACAAAGAAAGGGAATCACTACAACGAGCAAGAGCGCAA
TCTGTTGAATTCAGGGGTGGAAATGACAGTTTTGGTGTAAGTTTTGTATG
TGGTGGTTGCTAACACGTTCAATGCCGACCCTTTttagaaatcgatgaaa
attggaCCTCTCGTAATTTAATCGAAAATCTGATATTCAGCGGCTTCTGT
GGCTTCAATTTTGCTTCAAGTGCCTGTTCACATTGAATACCAATCGACGC
ATTATTTTACGTAGATTTcgaaaatgtaataaaaaagcAAGCAAAAGTTT
CTTTATTAAACGTTATGCACTATGAAGTAGCACCGGTATTTTGACTCTTC
TACTACGAGTAAACGCGTAGTCGATTCTGGTTCTACTGGATTGATCAAAC
GTGTCTATGTTGAAAAGGGCCTTTATTATGATGATATTTCGAGTTCATAA
AAGACAAGTAACAGATATGTAAAtgaacttttttaatttctattaatata
ttatttcatttttaaagtaTTGGTAAAATTATTGCGTTTTCAGGATGACA
ATTCTCGAATGTATGACAACCAACCACAATTGCAAAGACAAACAGAAGCT
GAACTTAGCCTGGATGAAATCAGGGAACGCGAAGCTGCTATCCGACAATT
AGAGGTTTGTAAAATGAGTGTGTTTAAAATATGATCTTTAAATGTCattg
attttaataaaaaaattgaatgggCAGAGGTTTaaatacaatcattggat
ttctaaaccttttttaaaagaaaattgaaacaagtTACCCCAAATTAAGG
GTAACTTTCGGACgtgaattttatacacgattagcattccctatatcaaa
acatatcagagggatGTGTACAGCCTATGACAAGGATCATTTTAATCTCC
AATACAAACCTGGGAACATCCGTTAAGAAGACTTTCCGGAAAGTCCGTCA
TTCTGTATACCTATCTTCCTTTTCTTTTAGTCTGATATTGTTGATGTAAA
TgagattttcaaagatttgGCCATCATGGTTCACGAACAAGGAGAAACTA
TCGGTATGATTTCTATTTCAATAATTTAAGACGAACAGACACAGACACCC
TTAAATAATTCGATAAACTTTGTTGATAAGCATAAGTTCCAAAAATTGCC
ACGTTTATCATCGTCTGGCCATTCCTGAATATTTTACTAAATTATATCAT
GAACTCAATTTCACATAACGATCTGacgttttttttactttatttttttg
acaCCAACAGATAGCATCGAAGCGAACGTCGATACCGCTGTATCACACGT
CGAAGCTGGCAACGTACATTTACACAAAGCTCGTGACTACCAGAAGAAAT
CACGAAGGAAAATGTGTATTCTTATTCTCATCCTTttgattgttgttgtt
gtacttggtcttattatttatttttctgtcAAGTAATTTATTATTTCTAG
AGCTGCACCTTCCTGTCCCTGTGTATGAATCTTAGATCATTTTTAGTCTC
GTTTAGTGGATCGTGGAACGAAAGGAAAATCGAGCTTCGCTCTTACAATT
TTTTGTGCAAAGTTACAGCGAAGCTCTTTAAATCTGTTTCTTGTCTCACT
ATATAATTATTATATAATTAACAATATCGTAAAAAGTTAGATCAATGAAT
GTTTGTTATTAATCTAATTTTTCAATGGTCTTCATAatatattctttatt
ttattccGAAGTAAAAACTTTTCGCATATACACCATTCCAATCTTAATAT
TCAGGCTAATAAAGCTTACTATGGGTTAACATAACTTATTCTACCTTGGT
AAGTCAAAACACTAATTACAGGTATTAACATAATAGTTTAGTATCACTGT
AAATTATTCTAACAATCATTATATGGTCTACGGAGTCTTTGGAAGGTTTC
TTTGATGATCTATTGTTAGTTTGATTAAATAAAACAAGTTTTAATCAATT
TCGTACTCAAAGTCTCGTGTTATCCTGGATGGCAATCTGCAGCGAAATCA
TAAAGCTAGCTCTAATATCATTAACATCGAGCACTCTTATTGGTTCTCGC
TTGAACAAAGCATAATAACTAATTTTTGTGACGCCATTTTACTGCATAAG
TCTCTGGTAAAGTTGGCTTTTGTGATCTTTAGTAGCTTTCTTTTCtagtg
tttttgtttttgttcaagTTTTTTTATTCTAGCCTATGCTGATTATAATG
ATTGCTCCTGATTCATCTTTATATAATATAGCTAGGtatattattttaaa
ttttttcatttactaAGTCAATGATGAACTGGAACTGGCCAGCCAGTACc
aagaatatatatttttggcTCTACTAATCCTAAGAAAATCTTAGGGGTTT
ATTAACATTTCGATGATTGACATTGCCCTGTTTTAAAATTTGGCCCTGAC
CTTTTACCTCTGGGTGAACAAAAACAGTTTaaacaatttattatttttta
aaggaaTATTGTAAATTATCGGCTaacttttgtaatgaataaaaaaagta
aatttcaaaaaagtttcttatacgTAAAGATGGTTGATGCACGTGGTAAG
TTCATTAGAATACTTCTTGTAGATTTGTTGGTAAACGAAGTATAGAATAT
ACACATATCAACCAAGACtggtaatgaaaataaaatttctcgGCTGCcgg
catttttttttttttttttattcatagaattatatttcacaggtctatcg
acctctacgaaataattttagatttataaaatattgtctaattcttcatc
tgtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
tcgccttttggcacatatctttaataatttttctttcgttgatggtgaag
tcatctgtaatgctaaagccaccaatttcattgaatcttttcagcttatg
cagattttgcattgtccgttctttttcctctatactttttaagatcaact
tgattggacgccaatgtatagcccttttctgttttgtccaatgcggtgat
ggtgggacggtttgatatcttggacgccaatgttacctagtataccttca
atatctattttgtcttgttcctgttgttcctcTTTGTTATCTACCTCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTAGCGTTCGAAAAACTTAACTGAATCGAGGTTACA
CTTGTGTTTGCTACAATAGGCGAAAAGAACTTTCCTTGTATTTTCGTTAC
TATTCTCCTTAAAAAATAACCCCACTGCTGAGGGCTGATAGGTGTATTAA
ATGAGTTTCATGAGTAATTATTCATTGTATTTTATGACAGTTAGAGTTAC
TTGATTTTTCTGGCCACTTCTGGTTGAGCCTGTTCCCCGTGCAGACTTGT
TGAATATTGGAAATTCTTTCTTCGATAATTGTCAAGCGTTACTGTATGTG
TTggtattttcttgttttagcTTATTAATTTATACCAAAAATTGCAAACT
AACATTGCAATAAACATTATCAAAAGATGGAACAGCATAAACTGGTGTTA
CATGCGTTGTTTGCCCTGGCAATAATGCTTATATTGAGATAACTCCAAAG
TAACATCACATTAATTATGTAAGTACATCTATTTGTGTCCTTGTATAGAA
AACTGGTATGATCAAGATACAATGTGTTTTCATGGATAATATGATTGAAT
GTGATCTGTCGTCAAATTTAAAAGATACGTTTGAGGCAGCTAGGCAACTC
TAATGCTAACAACagcatatttttgtttttcgtaGAAATTCCTCTAAACA
CTCATGATATGACGCAACGAAGAGAAAATATGAAATGCATGTATCTTGCC
AAATTGAATTGATTGCTAAGTGAAATGAGTTTTTACATATTATTGTTgtc
ttgaaaatatttcttcgaTCATGTTTTTGTTATATCTCATATCGATCACA
TTCACTTCATATCGTTCACATTAACTTGCTCACAAAATTGGTTTGGTCGA
TATTATACGTGGATAGACAGTTTTGACTCGGCTACCTATATAAACTGAGC
AGGACATTCGAACTGAGAGCCTCTCAGACCAGCTTTTGGATTGAATTTTT
AAGCCTccgtttttaggcttttgtacTTAACATACTGTACGATCTGCCAA
GGATTTTCAGTTAAATTGTAGAAGGTGTATTTTCAAACTTACTCAACTTA
GATCAATCTTCTTTCCGATATAGCTTTTTTTATCTATAATCCAGGTgaca
caaacaaacaaacactgAAGGCTCCTACTCTCTCACAAAAGACCACTGAA
TCAcaccgccaggaggaaggaaccaGTAATATTTCAATAGAAGTTATAGA
CGAACCATTTGTGGTGGTATGCTGTCATCTACTTTACGCTTACGCTTACT
CTTCGCTGGTACTGAGTCCTCCCCCGAAGTTTCTTCGAACAGAGATTGTT
GTCCTAATATTTGTAAGTAGTTTGTTTTCATCAATAGAAACTTGGACTCT
CTAAGAGTAAGCTTACCCTGACGACCGTTGGCGATCAAAAGTAATTTGCA
GAATTCTCTTcctttaataatttttgatcGTGATGATATTGGATTTGTCA
GTCAAAAATTTGATCGCCACTGCAAATTTGGAGCAGTTTTCTGTTTTTCA
ATCTGAAAGGTTTAAAAAAATAGTCTCTAGAAAGTATTTATTTTATGTAT
AATAACCTTTGGGAATTCTGAGTAACGCGTTAAAAGacaaagatttttaa
gaatGGAATAGGATAATACTTTTTTACTAAAAATTTACAATCTATACACT
CCTTGTGTTCGTATGGATTAGCTGTCTTTGTGTCATCGGATGATAAgact
attcatgatatacaccattgcaatgtcttccacggacccaacagctgatt
ggttgaaagggACTTATTGATtcattttacgtcactttcaaccaatcagc
tgttggatccgtggaagacattgcaatggtgcatatcatgaattctacAT
TTTAATAGTAAAAGATGAGGAACAAGTGCAAAGACATTTTCCAGAACAAA
AAAAATCTACAGTAAGTATTCCTTCCAAAATCATTCTTGGACCTACCGTG
GAGGTCCtgtaaattaacccatgtccgttcgttcgcctgtctgttaccag
cttttctcaggattggttATCATAAGtttcttctgatttttgcacaatga
tacaaaatggcaatatcCGAAACGTGATGGAAcatgattttcgagaaaaa
ggGCAATTTTCTTTAGGCCAAATTTGGGACGAAACCTGGCTAAAAAAGGG
GTTTTTGGGAGTCTTCGTGAAATTGATACATCAATATTTCCTTTTTGCGT
AAATACAAAGGGAAAGGTTCTCTAAAGAGTGGCTGAAGCCGTTCAGTTTG
CATTTTCTTTCTAATTtgctcttttttctttattcatatTATATTCAGTA
TATTagccttcaggtaggtccattcagcatgtagcttgttaatattatta
ttattttattacagATTTTCTTTGTCAACGTCgtcgaaaaatgttgattt
taatTGCAGGAATATTCTCATGGAGCGTTACTGTCagactttttccattt
tttcaggAGCAGACtcctcttttacaaaaacaaacgaCAAAAGCTAAACG
TAACCTTGATAAGCTCAGAGAACGCGAGGCTGCCATGCATAAATTAGAGG
TTAGTGAGATTGATACCGTTGGTGTTAAAAAGGGGTTGTTGTACGTTGGT
GTACTTAGGATAATGGTAAATCAGTGCTTTGACACGTCCAAATTATCTAT
CTAGCGGTAGAGTTAGGGTCGAAACTGTTAAAGTCCTCCGTCACTGAGGT
GAATTCCTTAACAAATAAACTTTTCCATGAATGCGCGCGTGCGAAATCTC
AAATGCCGTACACACAGAGAGATGACGCTGTTATAATTTCTGTACCAGTC
TCTTTGCACcgcaatgttttttttgtttgttttttcagaATGATATTGTT
GACCTTAATGAGATGTTCAAAGATTTGGTCCTTTTGTATAATTCTAATGA
AGATATTATCGGTATGATTTTATCTTCCGGTCAATTTTTATGCTAATGAC
TAAATCAAATAAACGTCTTTTGAATAAATATGTGAGAAATCTTATATTTA
TGATAGTTCGTAAGCACCCATTTATACACTCCCGTGTCACCCACTGAAAG
ATCTATCCAAAACTTTGTTTCTGGTGGAAAGTTGACTTAATCCCAATTTG
AAATTCGCTTAAAAAAAACTGCACTCCGAATCCCCATAGGGATTTCCATT
GAAATTTTCACCGCCGatgtaaaaaaatgtttcacGGGCCTGCGAGACAG
GGATGTGTCTATGCTGTATTGcttattttaaaaagttattttgtagAAAA
CTGTTTGACTTAAAATAGCAAAATGAGTTTTAACTTTTAAAGCTAtacct
tttccaaaaaaaaataattttattttcgtAAAACTGACAGACAGCATCGA
AGCGGACGTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041568	XLOC_041568	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_455	supercontig	scaffold_455:552788..561347 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5457	5.46598	4.6193	45.225	2.92535	5.42813	1.75975e-07	0.00115534	1.82083e-09	0	0.146605	0.0002114	0	1.66612e-07	7.5553e-09	0.632715	0.181165	7.43347e-05	0.00838331	0	7.80536	2.26149	2.27478	3.04536	0.726	0	14.6714	28.7591	19.7482	25.8834

Blast

[Close]

BLAST of TCONS_00066446 vs. Swiss-Prot (Human)
Match: STX7 (Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4)

HSP 1 Score: 161.77 bits (408), Expect = 1.452e-47
Identity = 98/203 (48.28%), Postives = 141/203 (69.46%), Query Frame = 3

Query:  219 IANNASSNIQQLTRKIALIQKLVNQIGTPQDVPENFERLQSEQKDSNLLVKETSSLLQKLGNFQTNDPGEMRQRKIQQDKLHENFSNALNNFQKVQRLAADKERESLQRARAQSVEFRGGNDSFGDDNSRMYD-------NQPQLQRQTEAELSLDEIR---EREAAIRQLESDIVDVNEIFKDLAIMVHEQGETIDSIEADV 797
            +A   SSNIQ++T+    IQ+ +NQ+GTPQD PE  ++LQ +Q+ +N L KET   +++ G+  T  P E RQRKIQ+D+L   F+ +L NFQKVQR AA++E+E + R RA S      + SF +D+S+  +        QPQ+Q Q E E++ D++R   ERE++IRQLE+DI+D+NEIFKDL +M+HEQG+ IDSIEA+V
Sbjct:   14 LAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLPTT-PSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASS----RVSGSFPEDSSKERNLVSWESQTQPQVQVQDE-EITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANV 210

The following BLAST results are available for this feature:

BLAST of TCONS_00066446 vs. Swiss-Prot (Human)

BLAST of TCONS_00066446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
STX7	1.452e-47	48.28	Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4	[more]

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TCONS_00066446 (transcript) - C. hemisphaerica