TCONS_00066445 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066445
Unique Name	TCONS_00066445
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1548

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_455:552788..556518+

transcript sequence

>TCONS_00066445 ID=TCONS_00066445|Name=TCONS_00066445|organism=Clytia hemisphaerica|type=transcript|length=1548bp
CTGAAAATCATTTTGCCCAAAATAGGCTGAAGTTTTCCTTTTAATACAAA
ATAGCTTATAAAATttagaattaattttttctgggaAAAGGTAACTTAAA
AAATAACGATATAAAAATGTCTCGTGGTGATTTTGGTGCTGGTGGTGGCT
ATCAACAGAGCTATGGTGGCGGTGGATATGGACAGAGTGAAAGAAATGGG
GATACTGAATACATGAGAATTGCCAACAATGCAAGCAGTAACATCCAACA
ACTCACCAGAAAAAttGCATTAATACAAAAATTGGTCAACCAAATAGGGA
CACCTCAAGATGTCCCTGAAAATTTCGAACGATTGCAAAGTGAACAGAAA
GATTCAAACCTTTTGGTCAAAGAAACTTCAAGTCTTCTACAAAAATTGGG
GAACTTTCAAACAAATGACCCTGGAGAAATGCGACAAAGGAAGATACAAC
AAGATAAACTacatgaaaatttttcaaatgcacTAAACAACTTCCAAAAA
GTTCAACGGCTGGCAGCAGACAAAGAAAGGGAATCACTACAACGAGCAAG
AGCGCAATCTGTTGAATTCAGGGGTGGAAATGACAGTTTTGGTGATGACA
ATTCTCGAATGTATGACAACCAACCACAATTGCAAAGACAAACAGAAGCT
GAACTTAGCCTGGATGAAATCAGGGAACGCGAAGCTGCTATCCGACAATT
AGAGTCTGATATTGTTGATGTAAATgagattttcaaagatttgGCCATCA
TGGTTCACGAACAAGGAGAAACTATCGATAGCATCGAAGCGAACGTCGAT
ACCGCTGTATCACACGTCGAAGCTGGCAACGTACATTTACACAAAGCTCG
TGACTACCAGAAGAAATCACGAAGGAAAATGTGTATTCTTATTCTCATCC
TTttgattgttgttgttgtacttggtcttattatttatttttctgtcAAG
TAATTTATTATTTCTAGAGCTGCACCTTCCTGTCCCTGTGTATGAATCTT
AGATCATTTTTAGTCTCGTTTAGTGGATCGTGGAACGAAAGGAAAATCGA
GCTTCGCTCTTACAATTTTTTGTGCAAAGTTACAGCGAAGCTCTTTAAAT
CTGTTTCTTGTCTCACTATATAATTATTATATAATTAACAATATCGTAAA
AAGTTAGATCAATGAATGTTTGTTATTAATCTAATTTTTCAATGGTCTTC
ATAatatattctttattttattccGAAGTAAAAACTTTTCGCATATACAC
CATTCCAATCTTAATATTCAGGCTAATAAAGCTTACTATGGGTTAACATA
ACTTATTCTACCTTGGTAAGTCAAAACACTAATTACAGGTATTAACATAA
TAGTTTAGTATCACTGTAAATTATTCTAACAATCATTATATGGTCTACGG
AGTCTTTGGAAGGTTTCTTTGATGATCTATTGTTAGTTTGATTAAATAAA
ACAAGTTTTAATCAATTTCGTACTCAAAGTCTCGTGTTATCCTGGATGGC
AATCTGCAGCGAAATCATAAAGCTAGCTCTAATATCATTAACATCGAG

Run BLAST on NCBI

transcript from alignment at scaffold_455:552788..556518+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066445 ID=TCONS_00066445|Name=TCONS_00066445|organism=Clytia hemisphaerica|type=transcript|length=3731bp|location=Sequence derived from alignment at scaffold_455:552788..556518+ (Clytia hemisphaerica)
CTGAAAATCATTTTGCCCAAAATAGGCTGAAGTTTTCCTTTTAATACAAA
ATAGCTTATAAAATttagaattaattttttctgggaAAAGGTAACTTAAA
AAATAACGATATAAAAATGTCTCGTGGTGATTTTGGTGCTGGTGGTGGCT
ATCAACAGAGCTATGGTGGCGGTGGATATGGACAGAGTAAGTCAAGATTG
CTTCCCTTAAAAAACATAGGGTTATTGTTATTGGAAATTTATCATCCTGT
TTTTTTATACTCTCGCTTTGATAATAAGTGTTTCTTTTGGATACAAGGAT
NCCTGTTTTTTTATACTCTCGCTTTGATAATAAGTGTTTCTTTTAGATAC
AAGGATAACTTGCTCACATCCAAATTCTTCAATtcaaattctatttttaa
aaagcAGTATTAATGAATTTTTAGGTGAAAGAAATGGGGATACTGAATAC
ATGAGAATTGCCAACAATGCAAGCAGTAACATCCAACAACTCACCAGAAA
AAGTTAGTAGATATATTCATCATTTGACTTTAATCttcgattttcatttt
ttttgacgTTGTAGGATTATCACTCATATATCTGTTGTTTACCGGTtatc
gtttttttttctatttagttGCATTAATACAAAAATTGGTCAACCAAATA
GGGACACCTCAAGATGTCCCTGAAAATTTCGAACGATTGTAAGTCCCTTT
GAGTTTTACTGTTATCAAAAAGCAAGCTGGatttgcttgaaattgaaaag
agcTTTTGGAAGTGGAGACTTTCCTATTTTCCTACTTTTTCCTTTGTACA
GTAAGTTTTTGCGGCAGAAAATCAGTGTATTTATTCTTTCCCAATCACCA
TACAACCAACGTACACTAATTTTGTATCATTTCANCATGTGTTTATTCTT
TCCCAATCACCATACAACGTACACTAATTTTGTATCATTTCAATAGTAAG
TAAATGATAAAGTAAAGGCCACTATTTTCTCTTAGATTAAGAGTTTGTTT
TAGCACTATTAACGtatatttaatttttgtgaattttcaaaataatctga
CATATTCTTACAGGCAAAGTGAACAGAAAGATTCAAACCTTTTGGTCAAA
GAAACTTCAAGTCTTCTACAAAAATTGGGGAACTTTCAAACAAATGACCC
TGGAGAAATGGTAACTGTTTATTAGTTTGAAATAGCAAATTTTTGCAGTT
GACTTTGAATCTTGATTGTCCAAATGGTACAAGTACCTTCAACTTTattc
aaattaaatttaattcGATTTACTTTCTATTCCTTCTTTTAGCGACAAAG
GAAGATACAACAAGATAAACTacatgaaaatttttcaaatgcacTAAACA
ACTTCCAAAAAGTTCAACGGGTAAGTTCCGACCATGGAGCAGCTTTTTTC
TGGCTTAAGTCTTTTGTGTCATATTCCATGGTTTTTATGAACTCTCTGCC
TGATCCACACTTGTAATTTTTCATCCCCCCTAACTTGTTCctaagatttt
gaaatttttatttccagCTATTAAAAGAGAACTCCTGAATTCGCCCCTAG
GTAGCCTGGCCTGATTTGCTCTTTGGTTTCCTTATTACGGTTTTTAGAAG
TCTGGTCTCAAGCCCCAACTTTTGTGAATTGAAATTAGAATATTTTTACC
AAATCATCAATAAAAAACCCAACCTTCAACACTTTTTCTTCACTCTCTTT
AGCTGGCAGCAGACAAAGAAAGGGAATCACTACAACGAGCAAGAGCGCAA
TCTGTTGAATTCAGGGGTGGAAATGACAGTTTTGGTGTAAGTTTTGTATG
TGGTGGTTGCTAACACGTTCAATGCCGACCCTTTttagaaatcgatgaaa
attggaCCTCTCGTAATTTAATCGAAAATCTGATATTCAGCGGCTTCTGT
GGCTTCAATTTTGCTTCAAGTGCCTGTTCACATTGAATACCAATCGACGC
ATTATTTTACGTAGATTTcgaaaatgtaataaaaaagcAAGCAAAAGTTT
CTTTATTAAACGTTATGCACTATGAAGTAGCACCGGTATTTTGACTCTTC
TACTACGAGTAAACGCGTAGTCGATTCTGGTTCTACTGGATTGATCAAAC
GTGTCTATGTTGAAAAGGGCCTTTATTATGATGATATTTCGAGTTCATAA
AAGACAAGTAACAGATATGTAAAtgaacttttttaatttctattaatata
ttatttcatttttaaagtaTTGGTAAAATTATTGCGTTTTCAGGATGACA
ATTCTCGAATGTATGACAACCAACCACAATTGCAAAGACAAACAGAAGCT
GAACTTAGCCTGGATGAAATCAGGGAACGCGAAGCTGCTATCCGACAATT
AGAGGTTTGTAAAATGAGTGTGTTTAAAATATGATCTTTAAATGTCattg
attttaataaaaaaattgaatgggCAGAGGTTTaaatacaatcattggat
ttctaaaccttttttaaaagaaaattgaaacaagtTACCCCAAATTAAGG
GTAACTTTCGGACgtgaattttatacacgattagcattccctatatcaaa
acatatcagagggatGTGTACAGCCTATGACAAGGATCATTTTAATCTCC
AATACAAACCTGGGAACATCCGTTAAGAAGACTTTCCGGAAAGTCCGTCA
TTCTGTATACCTATCTTCCTTTTCTTTTAGTCTGATATTGTTGATGTAAA
TgagattttcaaagatttgGCCATCATGGTTCACGAACAAGGAGAAACTA
TCGGTATGATTTCTATTTCAATAATTTAAGACGAACAGACACAGACACCC
TTAAATAATTCGATAAACTTTGTTGATAAGCATAAGTTCCAAAAATTGCC
ACGTTTATCATCGTCTGGCCATTCCTGAATATTTTACTAAATTATATCAT
GAACTCAATTTCACATAACGATCTGacgttttttttactttatttttttg
acaCCAACAGATAGCATCGAAGCGAACGTCGATACCGCTGTATCACACGT
CGAAGCTGGCAACGTACATTTACACAAAGCTCGTGACTACCAGAAGAAAT
CACGAAGGAAAATGTGTATTCTTATTCTCATCCTTttgattgttgttgtt
gtacttggtcttattatttatttttctgtcAAGTAATTTATTATTTCTAG
AGCTGCACCTTCCTGTCCCTGTGTATGAATCTTAGATCATTTTTAGTCTC
GTTTAGTGGATCGTGGAACGAAAGGAAAATCGAGCTTCGCTCTTACAATT
TTTTGTGCAAAGTTACAGCGAAGCTCTTTAAATCTGTTTCTTGTCTCACT
ATATAATTATTATATAATTAACAATATCGTAAAAAGTTAGATCAATGAAT
GTTTGTTATTAATCTAATTTTTCAATGGTCTTCATAatatattctttatt
ttattccGAAGTAAAAACTTTTCGCATATACACCATTCCAATCTTAATAT
TCAGGCTAATAAAGCTTACTATGGGTTAACATAACTTATTCTACCTTGGT
AAGTCAAAACACTAATTACAGGTATTAACATAATAGTTTAGTATCACTGT
AAATTATTCTAACAATCATTATATGGTCTACGGAGTCTTTGGAAGGTTTC
TTTGATGATCTATTGTTAGTTTGATTAAATAAAACAAGTTTTAATCAATT
TCGTACTCAAAGTCTCGTGTTATCCTGGATGGCAATCTGCAGCGAAATCA
TAAAGCTAGCTCTAATATCATTAACATCGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041568	XLOC_041568	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_455	supercontig	scaffold_455:552788..556518 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.0266	34.2543	123.065	134.107	29.745	19.4553	34.1046	37.7691	42.9713	45.6781	49.5041	31.0603	36.1222	26.9071	26.516	29.4566	32.393	33.7222	26.9757	44.8507	37.7279	39.8213	37.1823	42.0844	18.5497	24.8122	118.159	109.88	119.494	110.891

Blast

[Close]

BLAST of TCONS_00066445 vs. Swiss-Prot (Human)
Match: STX7 (Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4)

HSP 1 Score: 187.193 bits (474), Expect = 1.388e-54
Identity = 111/229 (48.47%), Postives = 158/229 (69.00%), Query Frame = 3

Query:  219 IANNASSNIQQLTRKIALIQKLVNQIGTPQDVPENFERLQSEQKDSNLLVKETSSLLQKLGNFQTNDPGEMRQRKIQQDKLHENFSNALNNFQKVQRLAADKERESLQRARAQSVEFRGGNDSFGDDNSRMYD-------NQPQLQRQTEAELSLDEIR---EREAAIRQLESDIVDVNEIFKDLAIMVHEQGETIDSIEANVDTAVSHVEAGNVHLHKARDYQKKSRR 875
            +A   SSNIQ++T+    IQ+ +NQ+GTPQD PE  ++LQ +Q+ +N L KET   +++ G+  T  P E RQRKIQ+D+L   F+ +L NFQKVQR AA++E+E + R RA S      + SF +D+S+  +        QPQ+Q Q E E++ D++R   ERE++IRQLE+DI+D+NEIFKDL +M+HEQG+ IDSIEANV+ A  HV+  N  L +A DYQ+KSR+
Sbjct:   14 LAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLPTT-PSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASS----RVSGSFPEDSSKERNLVSWESQTQPQVQVQDE-EITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRK 236

The following BLAST results are available for this feature:

BLAST of TCONS_00066445 vs. Swiss-Prot (Human)

BLAST of TCONS_00066445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
STX7	1.388e-54	48.47	Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4	[more]

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TCONS_00066445 (transcript) - C. hemisphaerica