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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066442 ID=TCONS_00066442|Name=TCONS_00066442|organism=Clytia hemisphaerica|type=transcript|length=2236bp
AATAGCACACCCAACGAAAAGCTGACTCAGCAAACACGAACAAAGAATAG
CACGTGTAATCCGATTTTCCAAGAGATTCTCATTTTCCCAATGGGAGAAG
AAAGTATTGCTAATTCACACCTCAAAATCTCCATATGGGATAAAATTTCT
GGCCGTGACAATGACTTCCTTGGAGAAACAGTTGTTGACTTATGTAAATT
GAATCTGAATTCTGGTAACCTTCTCTGGTACAAACTGAAACCCCAGGTAG
GctgatattttatatttctgTGTTAACATAGTGTGATGCTGTTTAGAAAG
GTTACAATGAAACATTGAAATTATCTCAAATTGCTCAAATGTTTTTTATG
CTTTTTATTTTTGACCAgtgaatttcatttcaaaaaagaatatatATGGT
ATTATCAGAATCTGCATATAATTTCGGCGAACATTACGTAAAATTTTCCT
CTGTAAAGACACAGAAGAAGGGGGTTTTCTGAGAGGAAAAGATCTGATTT
TGTAAAATAGAGGAGTTATAAAGGAAGGGCAGGATTTTTTATAAGAGAGG
CATAGACACCCATCTGCACACTATGTAGGAATCGATGGTCTCAATTGTCT
GATCCGTCGGATTTGGAACATAGGCAGTGGCCATCTCTAAATTACCGAGA
TAGTAATAAtctctaaaaaatatttttggttttgtttgtttcttattatC
AATCGCATTTTCGTGTTGCTACAACATCCTTATTACGTTCAAGacgaacg
ttgaaataacgttttGTATCAAAATGGTTTGTGGTTGCCATTATTGCTGA
TGCCTATCAATAATCAGATTATATTGGCACGTACAGAAACCATCCAAATC
TTTTTGACATTCTAAAAACTATCCGACCTTGgtcacaacgttgtttcaac
gtttttctaatgttcacaacgtccatataatatTAATTAATTTAAGCGTT
GAATCACCGTCGATATCTGATGCAGTTGATTTTAAGAATGAATATTTTAA
TTTCCTTTTCTTTAGATTTAAAATGAAACCTTTTTGCCcccatctttttt
gaaaatcttatctGACGCTTGTTTTTATCGACACTTTCAAGCTATCCATT
TATCTATCCTCAAGCAACAAAACACCTCGACCAGGTCAATTATTTCTCTA
CCTTTAACTAAGTAGAAAGCTCACGTTGCTAAGATTATGGACTTGATTTA
ATTTTAAAGACGCCAGGCCACGATATAATTTTCCGAAGCTACTTTATCAA
GCCGAAAGCAATTTTTATGTTATCGATCGAAACTTACTTTGGGTGATGCT
AAAGATAAGGTGACCATAGACTTCCTCTTTCTAGAagccattctatttta
ttaatGCATGATTGATATCATCTAGGGCCTGTTTACCTCAATTTTCATAG
TCATGGAAGTCATGAAATTATTGTTCAACTTTCCCATGAGTGTTTTGTCG
ACCATAGACTGTCCACATACCTTGTGTATTTAGTTAAAGATAGGATCAAC
GAACTGGCTCTCTAGAACTCCCTCCACAACGCCAAGCATtaaattatcaa
aaactttGATGTTTTCAGGAGCATGGATAGAGATTTTCACTGGAgaatga
aaatttccaaatttagaAATAGAAGCTACGAGTTATAAAATGTAGTAAAA
CTCTTGGGATAACTTAGTTTAATATCGTCCAAAATTCTTCAGATGGGCTG
TGTTCCAACAGTGTTACTATTAATTTCCAAAAACAGACGTCAGCTCGATC
ACGTTCGTAACATCcttaaaatcctttaaaaacaaaaatgtaccgACTTC
GTTTGCGCTTAGAGATCTTCCCAAGCCCAAAAGATCGATGTATCGTTTTT
GTAACTATTCTCGGAAATTTCTTAATTACTTCTTTCTTAGAAAGATAAAG
ACTTGGGGAATTAGACTTCTTAACGGAGGCTTGTTTGAAGGTGGCTCCGC
TATGCAAGTACCCACCAAGATGGGCTATGAGGTTTGAAAAACATCCAAAG
GGTTACTTATTTACAATGTCACAATGTCAGCATTAAAGAAACAATGATAT
GAAAAAGTAATTCTTTGGGATGGTGTTTAGCTTTTATAATAGCAAAGCTC
TGATTGAGACCGAATACAAGATTTCATGTGAAGAAGTTGTAGCTTAATAG
TTACCTACCACTAATCTCTGATACATTTATTAGTTTCAACTGTTAAAAAA
TACCTTTCACTTTTCCTAGTCTAATACAGTTAGAAA Run BLAST on NCBI transcript from alignment at scaffold_455:504662..506897+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066442 ID=TCONS_00066442|Name=TCONS_00066442|organism=Clytia hemisphaerica|type=transcript|length=2236bp|location=Sequence derived from alignment at scaffold_455:504662..506897+ (Clytia hemisphaerica)
AATAGCACACCCAACGAAAAGCTGACTCAGCAAACACGAACAAAGAATAG
CACGTGTAATCCGATTTTCCAAGAGATTCTCATTTTCCCAATGGGAGAAG
AAAGTATTGCTAATTCACACCTCAAAATCTCCATATGGGATAAAATTTCT
GGCCGTGACAATGACTTCCTTGGAGAAACAGTTGTTGACTTATGTAAATT
GAATCTGAATTCTGGTAACCTTCTCTGGTACAAACTGAAACCCCAGGTAG
GctgatattttatatttctgTGTTAACATAGTGTGATGCTGTTTAGAAAG
GTTACAATGAAACATTGAAATTATCTCAAATTGCTCAAATGTTTTTTATG
CTTTTTATTTTTGACCAgtgaatttcatttcaaaaaagaatatatATGGT
ATTATCAGAATCTGCATATAATTTCGGCGAACATTACGTAAAATTTTCCT
CTGTAAAGACACAGAAGAAGGGGGTTTTCTGAGAGGAAAAGATCTGATTT
TGTAAAATAGAGGAGTTATAAAGGAAGGGCAGGATTTTTTATAAGAGAGG
CATAGACACCCATCTGCACACTATGTAGGAATCGATGGTCTCAATTGTCT
GATCCGTCGGATTTGGAACATAGGCAGTGGCCATCTCTAAATTACCGAGA
TAGTAATAAtctctaaaaaatatttttggttttgtttgtttcttattatC
AATCGCATTTTCGTGTTGCTACAACATCCTTATTACGTTCAAGacgaacg
ttgaaataacgttttGTATCAAAATGGTTTGTGGTTGCCATTATTGCTGA
TGCCTATCAATAATCAGATTATATTGGCACGTACAGAAACCATCCAAATC
TTTTTGACATTCTAAAAACTATCCGACCTTGgtcacaacgttgtttcaac
gtttttctaatgttcacaacgtccatataatatTAATTAATTTAAGCGTT
GAATCACCGTCGATATCTGATGCAGTTGATTTTAAGAATGAATATTTTAA
TTTCCTTTTCTTTAGATTTAAAATGAAACCTTTTTGCCcccatctttttt
gaaaatcttatctGACGCTTGTTTTTATCGACACTTTCAAGCTATCCATT
TATCTATCCTCAAGCAACAAAACACCTCGACCAGGTCAATTATTTCTCTA
CCTTTAACTAAGTAGAAAGCTCACGTTGCTAAGATTATGGACTTGATTTA
ATTTTAAAGACGCCAGGCCACGATATAATTTTCCGAAGCTACTTTATCAA
GCCGAAAGCAATTTTTATGTTATCGATCGAAACTTACTTTGGGTGATGCT
AAAGATAAGGTGACCATAGACTTCCTCTTTCTAGAagccattctatttta
ttaatGCATGATTGATATCATCTAGGGCCTGTTTACCTCAATTTTCATAG
TCATGGAAGTCATGAAATTATTGTTCAACTTTCCCATGAGTGTTTTGTCG
ACCATAGACTGTCCACATACCTTGTGTATTTAGTTAAAGATAGGATCAAC
GAACTGGCTCTCTAGAACTCCCTCCACAACGCCAAGCATtaaattatcaa
aaactttGATGTTTTCAGGAGCATGGATAGAGATTTTCACTGGAgaatga
aaatttccaaatttagaAATAGAAGCTACGAGTTATAAAATGTAGTAAAA
CTCTTGGGATAACTTAGTTTAATATCGTCCAAAATTCTTCAGATGGGCTG
TGTTCCAACAGTGTTACTATTAATTTCCAAAAACAGACGTCAGCTCGATC
ACGTTCGTAACATCcttaaaatcctttaaaaacaaaaatgtaccgACTTC
GTTTGCGCTTAGAGATCTTCCCAAGCCCAAAAGATCGATGTATCGTTTTT
GTAACTATTCTCGGAAATTTCTTAATTACTTCTTTCTTAGAAAGATAAAG
ACTTGGGGAATTAGACTTCTTAACGGAGGCTTGTTTGAAGGTGGCTCCGC
TATGCAAGTACCCACCAAGATGGGCTATGAGGTTTGAAAAACATCCAAAG
GGTTACTTATTTACAATGTCACAATGTCAGCATTAAAGAAACAATGATAT
GAAAAAGTAATTCTTTGGGATGGTGTTTAGCTTTTATAATAGCAAAGCTC
TGATTGAGACCGAATACAAGATTTCATGTGAAGAAGTTGTAGCTTAATAG
TTACCTACCACTAATCTCTGATACATTTATTAGTTTCAACTGTTAAAAAA
TACCTTTCACTTTTCCTAGTCTAATACAGTTAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066442-exon-scaffold_455-1491911889:504662..506897 | TCONS_00066442-exon-scaffold_455-1491911889:504662..506897 | Clytia hemisphaerica | exon |
| TCONS_00066442-exon-scaffold_455-1510915933:504662..506897 | TCONS_00066442-exon-scaffold_455-1510915933:504662..506897 | Clytia hemisphaerica | exon |
| TCONS_00066442-exon-scaffold_455-1575043694:504662..506897 | TCONS_00066442-exon-scaffold_455-1575043694:504662..506897 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:504662..506897 + |
Blast
The following BLAST results are available for this feature:
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