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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066439 ID=TCONS_00066439|Name=TCONS_00066439|organism=Clytia hemisphaerica|type=transcript|length=2561bp
TTATAGATCTGAATATAACACAAAATAGGAATCAAAATGGCTCCGTGTGA
TCCATGGAAAGTATTTGGCTATGTGTCATTACTTTATTACTTCTATTCAA
TACTTGGAATCAAGATGTCGTTCATATTGGTCAGCAGTCTTGTCTATTTC
ACTGATGGTTTGAAAGATTTGGCTTTCGCTAAACGAATTATCATCAGAGA
TTGTTATTGGTTCTTTATTACTTTGACCAGAGTTGTTCCAAATAtgttga
aaaacaaagaaaaatcaccGAACCAGTTCTTATCCGAAAAGGCTGAACAA
CTTCCAAACAAAAAAGCCCTTATCGACGCTGAAACAGGACGATCTTTAAC
TTTCaacgaaattcaaaattttatcaacaaAATTGGTCGTGTTTTTAATA
AGTCTGGTTATAAACCAGGAGATAAAATTGCGCTATTCCTTGGAAATGAG
TTGGAGTACGTGCCCATATGGCTAGGATTGAACAAAGTTGGTATCAAAGT
TGGTTTGATTAATTATAACCTTCAAGGTAAAAGTTTGAATCACTGTTTAA
CTCTTGTTGAATACAAAGCTGTTATTTGCGCTCCAGAACTGATGACGGCT
ATTAAAAACATTGATTTCCACGAAAACTCTGGTGtcgagatttttatttt
tggtgatGACTCTTATGAAGGAGATTACAAGGATCTGAAAGAACTGATCA
AAGAGCAGAAAGATTCGGCTGCAATTGAGGGCTTGGATATGAAAGCTAAC
GATGTTTGCCTTCTAATGTACACCTCTGGTAGTACTGGATTCCCAAAAGC
AGCCAAAGTTAAATGCGGAAAATTCGTCAAAGTTTGTGTTTCAAATGAGT
TTGTTATGACAAGTCCAGACGACATTGTTTATAATAGTTTACCTTTATAT
CACGGTACTGGAGGAGCTTTGGCTATGAGTCCTCTCTTGTATAAAGGATG
TACCACTGTCATTCGAAAGAAGTTTAGTGCCTCCAAATTTATTCTTGAAT
GTATCAAGTATGATGTGACATGGGTTGGCTATGTCGGGGAATTATGGAAA
TATTTGTTGTCGCAACCAGTAAGAGATACAGATCGTCAACATAAGATTCG
AATGATCCTTGGTAATGGGCTGAGAAAGAACATGGCGCCTTTGGTGAAAG
AAAGGTTTGGTATCAATAAGATTGCTGAGTTGTACGGAGCTACTGAGGGG
AACTCCGTCCTCTTAAACGTCGATAACGTCCCTGGAGCTGTTGGATTCTA
CTATTTTTTGTTTCCGTTTTTGAATCAGAATTGTTTGGTTAAAGCAGATG
TTGAAACTGGTGAGATTGTCAGGGATGAGAATGGTCGAGCTATCCTTTGC
AAACCTGGTGAAGTTGGTGCATTGATTGCTGTTATCAACAAAATTCTCTC
ATATGATGGTTATGTAAATAATTCTAGCGAGACCAATAAAAAGATAGCTT
ACAATGTCTTTAAGGAAGGAGATTCTGCTTTTAAATCTGGTGATCTGTTG
GTCATGGATGAGTATCGTAATATCTATTTTGCAGACCGGATTGGCGATAC
CTTCCGTTGGAGAGGTGAGAATGTTGCCACAACTGAAGTGGAAAATATCA
TGTCATCTGTAATCAGCACTGCTGAAGATGTGGTCGTTTATCCAGTACCT
ATACCAGGAGAAGGAGGGAATGCTGGCATGGCTTACATTCGAGAAAAAGA
AAACCAACAATTTTCAATCAAAGGTGTCGCTCAAAGTCTGTTGGAAGAAT
TGCCAAAATATGCAATTCCAATGTTCATTCGTATTGGCCGAAGTCTTGAT
CAAACTGGTACCTTCAAATATCAAAAGAGCGCcttgaagaaagaaaaata
tgatttaaAGAGCTGCAATAAAGATGATGTTATTTATGTCTATGACGTCA
CCaagaaagattacgtaattcttGATGCAGAACTTCAAGAGTATATTGAA
AATGGAAACATGAGATTTTGAAGAATACTGAAAAGTTACATTGATAATta
cacccgggggggggtacttaggcaaatggagggtacggtatgtgccgccc
ttaagggtaccttttttggacttccaaagtcccgctaagggtcggaaaaa
tcagaaaatcaaatttcagtcccagtaagggtcggaaaaataggaaaatt
tcAACTTTTTACCCCCTGAAAGATCAAAATTTGGTCcaaattggtcaaat
tagtcccgctaagggtcgtaaaattcccaaaattttcctttgttttctac
tttttagtcccggtaagggtccaaagttcgaaagtcgggcggcacccacc
cgtcagctcgcaaccctagtacccccccccgggtaatTACACATATCAAA
GATAATTCGAACAAACAGtttaggaaaatatttttagcttttgaattttt
atatacACCATTTATCATTTACTAGTGAATTTTAGTGTAATTTATATACA
CAAaacatacagggtgtccctaataaaagtatcgagtttgaacatgcgat
tgagtagaaagttttaagtgtgtattcacaaaattgtattttaagctctc
cctcttttttc Run BLAST on NCBI transcript from alignment at scaffold_455:433558..436185+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066439 ID=TCONS_00066439|Name=TCONS_00066439|organism=Clytia hemisphaerica|type=transcript|length=2628bp|location=Sequence derived from alignment at scaffold_455:433558..436185+ (Clytia hemisphaerica)
TTATAGATCTGAATATAACACAAAATAGGAATCAAAATGGCTCCGTGTGA
TCCATGGAAAGTATTTGGCTATGTGTCATTACTTTATTACTTCTATTCAA
TACTTGGAATCAAGATGTCGTTCATATTGGTCAGCAGTCTTGTCTATTTC
ACTGATGGTTTGAAAGATTTGGCTTTCGCTAAACGAATTATCATCAGAGA
TTGTTATTGGTTCTTTATTACTTTGACCAGAGTTGTTCCAAATAtgttga
aaaacaaagaaaaatcaccGAACCAGTTCTTATCCGAAAAGGCTGAACAA
CTTCCAAACAAAAAAGCCCTTATCGACGCTGAAACAGGACGATCNTTTAT
CTGAAAAGGCTGAACAACTTCCAAACAAAAAAGCCCTTATCGACGCTGAA
ACAGGACGATCTTTAACTTTCaacgaaattcaaaattttatcaacaaAAT
TGGTCGTGTTTTTAATAAGTCTGGTTATAAACCAGGAGATAAAATTGCGC
TATTCCTTGGAAATGAGTTGGAGTACGTGCCCATATGGCTAGGATTGAAC
AAAGTTGGTATCAAAGTTGGTTTGATTAATTATAACCTTCAAGGTAAAAG
TTTGAATCACTGTTTAACTCTTGTTGAATACAAAGCTGTTATTTGCGCTC
CAGAACTGATGACGGCTATTAAAAACATTGATTTCCACGAAAACTCTGGT
GtcgagatttttatttttggtgatGACTCTTATGAAGGAGATTACAAGGA
TCTGAAAGAACTGATCAAAGAGCAGAAAGATTCGGCTGCAATTGAGGGCT
TGGATATGAAAGCTAACGATGTTTGCCTTCTAATGTACACCTCTGGTAGT
ACTGGATTCCCAAAAGCAGCCAAAGTTAAATGCGGAAAATTCGTCAAAGT
TTGTGTTTCAAATGAGTTTGTTATGACAAGTCCAGACGACATTGTTTATA
ATAGTTTACCTTTATATCACGGTACTGGAGGAGCTTTGGCTATGAGTCCT
CTCTTGTATAAAGGATGTACCACTGTCATTCGAAAGAAGTTTAGTGCCTC
CAAATTTATTCTTGAATGTATCAAGTATGATGTGACATGGGTTGGCTATG
TCGGGGAATTATGGAAATATTTGTTGTCGCAACCAGTAAGAGATACAGAT
CGTCAACATAAGATTCGAATGATCCTTGGTAATGGGCTGAGAAAGAACAT
GGCGCCTTTGGTGAAAGAAAGGTTTGGTATCAATAAGATTGCTGAGTTGT
ACGGAGCTACTGAGGGGAACTCCGTCCTCTTAAACGTCGATAACGTCCCT
GGAGCTGTTGGATTCTACTATTTTTTGTTTCCGTTTTTGAATCAGAATTG
TTTGGTTAAAGCAGATGTTGAAACTGGTGAGATTGTCAGGGATGAGAATG
GTCGAGCTATCCTTTGCAAACCTGGTGAAGTTGGTGCATTGATTGCTGTT
ATCAACAAAATTCTCTCATATGATGGTTATGTAAATAATTCTAGCGAGAC
CAATAAAAAGATAGCTTACAATGTCTTTAAGGAAGGAGATTCTGCTTTTA
AATCTGGTGATCTGTTGGTCATGGATGAGTATCGTAATATCTATTTTGCA
GACCGGATTGGCGATACCTTCCGTTGGAGAGGTGAGAATGTTGCCACAAC
TGAAGTGGAAAATATCATGTCATCTGTAATCAGCACTGCTGAAGATGTGG
TCGTTTATCCAGTACCTATACCAGGAGAAGGAGGGAATGCTGGCATGGCT
TACATTCGAGAAAAAGAAAACCAACAATTTTCAATCAAAGGTGTCGCTCA
AAGTCTGTTGGAAGAATTGCCAAAATATGCAATTCCAATGTTCATTCGTA
TTGGCCGAAGTCTTGATCAAACTGGTACCTTCAAATATCAAAAGAGCGCc
ttgaagaaagaaaaatatgatttaaAGAGCTGCAATAAAGATGATGTTAT
TTATGTCTATGACGTCACCaagaaagattacgtaattcttGATGCAGAAC
TTCAAGAGTATATTGAAAATGGAAACATGAGATTTTGAAGAATACTGAAA
AGTTACATTGATAATtacacccgggggggggtacttaggcaaatggaggg
tacggtatgtgccgcccttaagggtaccttttttggacttccaaagtccc
gctaagggtcggaaaaatcagaaaatcaaatttcagtcccagtaagggtc
ggaaaaataggaaaatttcAACTTTTTACCCCCTGAAAGATCAAAATTTG
GTCcaaattggtcaaattagtcccgctaagggtcgtaaaattcccaaaat
tttcctttgttttctactttttagtcccggtaagggtccaaagttcgaaa
gtcgggcggcacccacccgtcagctcgcaaccctagtacccccccccggg
taatTACACATATCAAAGATAATTCGAACAAACAGtttaggaaaatattt
ttagcttttgaatttttatatacACCATTTATCATTTACTAGTGAATTTT
AGTGTAATTTATATACACAAaacatacagggtgtccctaataaaagtatc
gagtttgaacatgcgattgagtagaaagttttaagtgtgtattcacaaaa
ttgtattttaagctctccctcttttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066439-exon-scaffold_455-1491911889:433558..433848 | TCONS_00066439-exon-scaffold_455-1491911889:433558..433848 | Clytia hemisphaerica | exon |
| TCONS_00066439-exon-scaffold_455-1510915933:433558..433848 | TCONS_00066439-exon-scaffold_455-1510915933:433558..433848 | Clytia hemisphaerica | exon |
| TCONS_00066439-exon-scaffold_455-1575043694:433558..433848 | TCONS_00066439-exon-scaffold_455-1575043694:433558..433848 | Clytia hemisphaerica | exon |
| TCONS_00066439-exon-scaffold_455-1491911889:433916..436185 | TCONS_00066439-exon-scaffold_455-1491911889:433916..436185 | Clytia hemisphaerica | exon |
| TCONS_00066439-exon-scaffold_455-1510915933:433916..436185 | TCONS_00066439-exon-scaffold_455-1510915933:433916..436185 | Clytia hemisphaerica | exon |
| TCONS_00066439-exon-scaffold_455-1575043694:433916..436185 | TCONS_00066439-exon-scaffold_455-1575043694:433916..436185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:433558..436185 + |
Blast
BLAST of TCONS_00066439 vs. Swiss-Prot (Human)
Match: S27A1 (Long-chain fatty acid transport protein 1 OS=Homo sapiens GN=SLC27A1 PE=2 SV=1) HSP 1 Score: 394.43 bits (1012), Expect = 4.722e-125 Identity = 221/561 (39.39%), Postives = 329/561 (58.65%), Query Frame = 1
Query: 295 EQLPNKKALIDAETGRSLTFNEIQNFINKIGRVFNKSGYKPGDKIALFLGNELEYVPIWLGLNKVGIKVGLINYNLQGKSLNHCLTLVEYKAVICAPELMTAIKNIDFHENSGVEIFIFGDDSYEGDYKD---LKELIKEQKDSAAIEGLDMKANDVCLLMYTSGSTGFPXXXXXXXXXX-XXXXXSNEFVMTSPDDIVYNSLPLYHGTGGALAMSPLLYKGCTTVIRKKFSASKFILECIKYDVTWVGYVGELWKYLLSQPVRDTDRQHKIRMILGNGLRKNMAPLVKERFGINKIAELYGATEGNSVLLNVDNVPGAVGFYYFLFPFLNQNCLVKADVETGEIVRDENGRAILCKPGEVGALIAVINK---ILSYDGYVNNSSETNKKIAYNVFKEGDSAFKSGDLLVMDEYRNIYFADRIGDTFRWRGENVATTEVENIMSSVISTAEDVVVYPVPIPGEGGNAGMAYIREKENQQFSIKGVAQSLLEELPKYAIPMFIRIGRSLDQTGTFKYQKSALKKEKYDLKSCNKDDVIYVYDVTKKDYVILDAELQEYIENG 1956
++ P + AL+DA TG TF ++ + N + +F + G+ PGD +A+FL E+V +WLGL K G++ L+N NL+ + L CL KA+I E++ A+ + H + F GD EG D L L+KE + + +D +YTSG+TG PKAA V ++ + D++Y+ LPLYH G + + L G T V+RKKFSAS+F +CIKY+ T V Y+GE+ +YLL QPVR+ +R+H++R+ +GNGLR + ERFG+ +I E YGATE N + N+D G+ GF + P + LVK + +T E++RD G I C+ GE G L+ IN+ + +DGYV+ S+ T+KKIA++VF +GDSA+ SGD+LVMDE +YF DR GDTFRWRGENV+TTEVE ++S ++ DV VY V +PG G AGMA + + + + Q L + L YA P+F+R+ +D TGTFK QK+ L++E +D + D ++ D+ + Y+ L+ + I +G
Sbjct: 87 QRQPERLALVDAGTGECWTFAQLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREPLAFCLGTSGAKALIFGGEMVAAVAEVSGHLGKSLIKFCSGDLGPEGILPDTHLLDPLLKEASTAPLAQIPSKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQAADVLYDCLPLYHSAGNIIGVGQCLIYGLTVVLRKKFSASRFWDDCIKYNCTVVQYIGEICRYLLKQPVREAERRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGKVGSCGFNSRILPHVYPIRLVKVNEDTMELLRDAQGLCIPCQAGEPGLLVGQINQQDPLRRFDGYVSESA-TSKKIAHSVFSKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEVEGVLSRLLGQT-DVAVYGVAVPGVEGKAGMAAVADPHS-LLDPNAIYQELQKVLAPYARPIFLRLLPQVDTTGTFKIQKTRLQREGFDPR--QTSDRLFFLDLKQGHYLPLNEAVYTRICSG 642
The following BLAST results are available for this feature:
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