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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066433 ID=TCONS_00066433|Name=TCONS_00066433|organism=Clytia hemisphaerica|type=transcript|length=2074bp
CGTCAATCATtactaacaaaaaattaacttaaaaaataagaaGATATTTC
CCAAGATGTTATACAACAAAAAGGGAAGAGCTATAACTATAAAGATGATT
gtctttatttttcagaatCTCATTTGTCCGTTTTCAATTTTAACTTGCAA
TTCTGCATCgagaattacgtaatctttcttGGTGACGTCATAGACATAAA
TGACATCATCTTTATTGCAGCTCTTcaaatcatatttttctttcttcaaa
gcGCTCTTTTGATATTTGAAGGTACCAGTTTGATCAAGATTTCGACCAAT
GCGAATGAACATTGGAATGGCATATTTTGGTAATTCTTCCAACAGACTTT
GAGCAACACCTTTAATTGAAAACTGTTGGTTTTCTTTTTCTCGAATGTAA
GCCATGCCAGCATTCCCTCCTTCTCCTGGTATAGGTACTGGATAAACGAC
CACATCTTCAGCAGTGCTGATTACAGATGACATGATATTTTCAACTTCAG
TTGTGGCAACATTCTCACCTCTCCAACGAAAGGTATCGCCAATCCGGTCA
ACGAAAAACACATTGCGATATTCATCCATAACCAAAAGATCACCAGAATT
GACAGCAGAGTCACCATCGTTGAACAGATTcctgatgatttttttctcag
taTCCTTAGCATTATTGACATATCCTTCAAATCCTCTATCCTGTCGAATC
AATCCAACAATCAAACCAACTTCGCCAGGTTTGCAAAGGATAGCTCGACC
ATTCTCATCTCTGATAATCTCGCCAGTTTCAACATCCACTTTCACCAAAC
AATTCTGATTCAAAAATGGGAACAAGAAATAGTAAAATCCAACAGCTCCG
GGAACGTTATCGAGATTAATCATCACTGCATTACCGTCAGTAGCACCATA
AAGCTCCACAATTCGTTGGACACCAAACCTCTTTTTAACTGGTCCGACCA
TATTCTTTCTCAAGCCGTTCCCAACTGCAATTCGAATCTTATGTCGACGA
TCGGTATCTCTGGGTGGCTGTGACAACAAGTATTTCCATAATTCACCGAT
ATAGACTACCCACGTCACATCATGTTTCACACAATCAGAAATGAAATTCG
AAGCACTGAACTTCTTTCGAATGATCGTCGTACATCCGTTATAAATCATG
GGCGACATACCACCCACACCGCCCGCTCCATGATAGAACGGTAGGGCGCA
ATACACCACATCCTCAGGTGTGTTAGTAAGCACTTCGTTACTGATAAAAG
GACCCAAAATCTTTTCATTTGTAACTCGAGCTGCTTTCGGTTTGCCAGTA
CTTCCAGAGGTATACATCAATAGAGGTGTGCCTTTTGGTCCTTTAATATC
ATCTCCTACAGGGCTAGAATCCTTTTGGTCATTGATCAGTCTTTTCAGAT
CCTTGTAATCTCCTTCAAACGATTCAtcaccaaaaatgaaaatcttgacA
CCAGATTTTTCGTGGAAATCAGTGTTCTTTAAAACCTTCACCAGATTTGG
ACTGCAAATAATACCTTTAAAGTCAACAACAGTTAAACAATGTTCCAAAC
TTTTTCCCTGCAAATTAAAGTTGATTAAACCGACTTGGATACCAATTTTG
TTCAATCCTAACCATATGGGAACATACTCCAATTCATTTCGAAGGAAAAG
TGCAATTTTATCTCCAGGGTTGTAACCGAAGCTTTTAATGACATGGCCAA
GTTTGttgataaaaatttgaatttcgttGAAAGTTAAAGATTGCCCTGTT
TCTGCGTCAACAAGGGCTTTTCTGTTCGGATATTTTTCGGTTGTTTCTCG
TAAAAGTTGATTTGGAGTTTTATCTCTGTTTCTCTTGATAGCTGGAATAA
ACTTGGTTGCAAAAATAAAAGCCCAATAACAATCTCTGATGATAAttcga
ttcgcgaaagttagaTCTTTCAAACCATCAGTGAAATAGACAAGACTGCT
CACCAATATGAACGACATCAGGATTCCAATTATTGAATAGAAGTAATAAA
GTAATGACACATAGCCAAATATTTTCCATGGATTACACGGTGCCATTCTC
GCTTCTTCCTGTATTGAGctgaaa Run BLAST on NCBI transcript from alignment at scaffold_455:418307..420500+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066433 ID=TCONS_00066433|Name=TCONS_00066433|organism=Clytia hemisphaerica|type=transcript|length=2194bp|location=Sequence derived from alignment at scaffold_455:418307..420500+ (Clytia hemisphaerica)
CGTCAATCATtactaacaaaaaattaacttaaaaaataagaaGATATTTC
CCAAGATGTTATACAACAAAAAGGGAAGAGCTATAACTATAAAGATGATT
gtctttatttttcagaatCTCATTTGTCCGTTTTCAATTTTAACTTGCAA
TTCTGCATCgagaattacgtaatctttcttGGTGACGTCATAGACATAAA
TGACATCATCTTTATTGCAGCTCTTcaaatcatatttttctttcttcaaa
gcGCTCTTTTGATATTTGAAGGTACCAGTTTGATCAAGATTTCGACCAAT
GCGAATGAACATTGGNtcttttgatatttgaaagTACCAGTTTGATCAAG
ATTTCGACCAATGCGAATGAACATTGGAATGGCATATTTTGGTAATTCTT
CCAACAGACTTTGAGCAACACCTTTAATTGAAAACTGTTGGTTTTCTTTT
TCTCGAATGTAAGCCATGCCAGCATTCCCTCCTTCTCCTGGTATAGGTAC
TGGATAAACGACCACATCTTCAGCAGTGCTGATTACAGATGACATGATAT
TTTCAACTTCAGTTGTGGCAACATTCTCACCTCTCCAACGAAAGGTATCG
CCAATCCGGTCAACGAAAAACACATTGCGATATTCATCCATAACCAAAAG
ATCACCAGAATTGACAGCAGAGTCACCATCGTTGAACAGATTcctgatga
tttttttctcagtaTCCTTAGCATTATTGACATATCCTTCAAATCCTCTA
TCCTGTCGAATCAATCCAACAATCAAACCAACTTCGCCAGGTTTGCAAAG
GATAGCTCGACCATTCTCATCTCTGATAATCTCGCCAGTTTCAACATCCA
CTTTCACCAAACAATTCTGATTCAAAAATGGGAACAAGAAATAGTAAAAT
CCAACAGCTCCGGGAACGTTATCGAGATTAATCATCACTGCATTACCGTC
AGTAGCACCATAAAGCTCCACAATTCGTTGGACACCAAACCTCTTTTTAA
CTGGTCCGACCATATTCTTTCTCAAGCCGTTCCCAACTGCAATTCGAATC
TTATGTCGACGATCGGTATCTCTGGGTGGCTGTGACAACAAGTATTTCCA
TAATTCACCGATATAGACTACCCACGTCACATCATGTTTCACACAATCAG
AAATGAAATTCGAAGCACTGAACTTCTTTCGAATGATCGTCGTACATCCG
TTATAAATCATGGGCGACATACCACCCACACCGCCCGCTCCATGATAGAA
CGGTAGGGCGCAATACACCACATCCTCAGGTGTGTTAGTAAGCACTTCGT
TACTGATAAAAGGACCCAAAATCTTTTCATTTGTAACTCGAGCTGCTTTC
GGTTTGCCAGTACTTCCAGAGGTATACATCAATAGAGGTGTGCCTTTTGG
TCCTTTAATATCATCTCCTACAGGGCTAGAATCCTTTTGGTCATTGATCA
GTCTTTTCAGATCCTTGTAATCTCCTTCAAACGATTCAtcaccaaaaatg
aaaatcttgacACCAGATTTTTCGTGGAAATCAGTGTTCTTTAAAACCTT
CACCAGATTTGGACTGCAAATAATACCTTTAAAGTCAACAACAGTTAAAC
AATGTTCCAAACTTTTTCCCTGCAAATTAAAGTTGATTAAACCGACTTGG
ATACCAATTTTGTTCAATCCTAACCATATGGGAACATACTCCAATTCATT
TCGAAGGAAAAGTGCAATTTTATCTCCAGGGTTGTAACCGAAGCTTTTAA
TGACATGGCCAAGTTTGttgataaaaatttgaatttcgttGAAAGTTAAA
GATTGCCCTGTTTCTGCGTCAACAAGGGCTTTTCTGTTCGGATATTTTTC
GGTTGTTTCTCGTAAAAGTTGATTTGGAGTTTTATCTCTGTTTCTCTTGA
TAGCTGGAATAAACTTGGTTGCAAAAATAAAAGCCCAATAACAATCTCTG
ATGATTATTCGTTTCGCGAAAGTTAAATCTTTCAAACCATCAGTGAAATA
GACAAGGCTNCATAAttcgattcgcgaaagttagaTCTTTCAAACCATCA
GTGAAATAGACAAGACTGCTCACCAATATGAACGACATCAGGATTCCAAT
TATTGAATAGAAGTAATAAAGTAATGACACATAGCCAAATATTTTCCATG
GATTACACGGTGCCATTCTCGCTTCTTCCTGTATTGAGctgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066433-exon-scaffold_455-1491911889:418307..418616 | TCONS_00066433-exon-scaffold_455-1491911889:418307..418616 | Clytia hemisphaerica | exon |
| TCONS_00066433-exon-scaffold_455-1510915933:418307..418616 | TCONS_00066433-exon-scaffold_455-1510915933:418307..418616 | Clytia hemisphaerica | exon |
| TCONS_00066433-exon-scaffold_455-1575043694:418307..418616 | TCONS_00066433-exon-scaffold_455-1575043694:418307..418616 | Clytia hemisphaerica | exon |
| TCONS_00066433-exon-scaffold_455-1491911889:418679..420259 | TCONS_00066433-exon-scaffold_455-1491911889:418679..420259 | Clytia hemisphaerica | exon |
| TCONS_00066433-exon-scaffold_455-1510915933:418679..420259 | TCONS_00066433-exon-scaffold_455-1510915933:418679..420259 | Clytia hemisphaerica | exon |
| TCONS_00066433-exon-scaffold_455-1575043694:418679..420259 | TCONS_00066433-exon-scaffold_455-1575043694:418679..420259 | Clytia hemisphaerica | exon |
| TCONS_00066433-exon-scaffold_455-1491911889:420318..420500 | TCONS_00066433-exon-scaffold_455-1491911889:420318..420500 | Clytia hemisphaerica | exon |
| TCONS_00066433-exon-scaffold_455-1510915933:420318..420500 | TCONS_00066433-exon-scaffold_455-1510915933:420318..420500 | Clytia hemisphaerica | exon |
| TCONS_00066433-exon-scaffold_455-1575043694:420318..420500 | TCONS_00066433-exon-scaffold_455-1575043694:420318..420500 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:418307..420500 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00066433 vs. Swiss-Prot (Human)
Match: S27A1 (Long-chain fatty acid transport protein 1 OS=Homo sapiens GN=SLC27A1 PE=2 SV=1) HSP 1 Score: 392.119 bits (1006), Expect = 5.182e-126 Identity = 222/573 (38.74%), Postives = 330/573 (57.59%), Query Frame = -2
Query: 127 KTPNQLLRETTEKYPNRKALVDAETGQSLTFNEIQIFINKLGHVIKSFGYNPGDKIALFLRNELEYVPIWLGLNKIGIQVGLINFNLQGKSLEHCLTVVDFKGIICSPNLVKVLKNTDFHEKSGVKIFIFGDESFEGDYKDLKRL--INDQKDSSPVGD-DIKGPKGTPLLMYTSGSTGKPKAARVTNEKI--LGPFISNEVLTNTPEDVVYCALPFYHGAGGVGGMSPMIYNGCTTIIRKKFSASNFISDCVKHDVTWVVYIGELWKYLLSQPPRDTDRRHKIRIAVGNGLRKNMVGPVKKRFGVQRIVELYGATDGNAVMINLDNVPGAVGFYYFLFPFLNQNCLVKVDVETGEIIRDENGRAILCKPGEVGLIVGLIRQD---RGFEGYVNNAKDTEKKIIRNLFNDGDSAVNSGDLLVMDEYRNVFFVDRIGDTFRWRGENVATTEVENIMSSVISTAEDVVVYPVPIPGEGGNAGMAYIREKENQQFSIKGVAQSLLEELPKYAIPMFIRIGRNLDQTGTFKYQKSALKKEKYDLKSCNKDDVIYVYDVTKKDYVILDAELQVKIENG 1821
T ++ + ++ P R ALVDA TG+ TF ++ + N + ++ + G+ PGD +A+FL E+V +WLGL K G++ L+N NL+ + L CL K +I +V + H + F GD EG D L + + ++P+ KG +YTSG+TG PKAA V + + + F + DV+Y LP YH AG + G+ + G T ++RKKFSAS F DC+K++ T V YIGE+ +YLL QP R+ +RRH++R+AVGNGLR + +RFGV++I E YGAT+ N + N+D G+ GF + P + LVKV+ +T E++RD G I C+ GE GL+VG I Q R F+GYV+ + T KKI ++F+ GDSA SGD+LVMDE ++F DR GDTFRWRGENV+TTEVE ++S ++ DV VY V +PG G AGMA + + + + Q L + L YA P+F+R+ +D TGTFK QK+ L++E +D + D ++ D+ + Y+ L+ + +I +G
Sbjct: 76 HTIPRIFQAVVQRQPERLALVDAGTGECWTFAQLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREPLAFCLGTSGAKALIFGGEMVAAVAEVSGHLGKSLIKFCSGDLGPEGILPDTHLLDPLLKEASTAPLAQIPSKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRMAAF-GHHAYRMQAADVLYDCLPLYHSAGNIIGVGQCLIYGLTVVLRKKFSASRFWDDCIKYNCTVVQYIGEICRYLLKQPVREAERRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGKVGSCGFNSRILPHVYPIRLVKVNEDTMELLRDAQGLCIPCQAGEPGLLVGQINQQDPLRRFDGYVSESA-TSKKIAHSVFSKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEVEGVLSRLLGQT-DVAVYGVAVPGVEGKAGMAAVADPHS-LLDPNAIYQELQKVLAPYARPIFLRLLPQVDTTGTFKIQKTRLQREGFDPR--QTSDRLFFLDLKQGHYLPLNEAVYTRICSG 642
The following BLAST results are available for this feature:
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