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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066431 ID=TCONS_00066431|Name=TCONS_00066431|organism=Clytia hemisphaerica|type=transcript|length=1064bp
CACTACAGGAATGGACGTTTTATGGGCAGGTTGCCCTATGGTCACCTTGC
CTTTAGAGACATTAGCTTCACGTGTAGCAGCTTCTCAGATGCACGCGTTA
GGAGTTTCAGAGTTGGTCGCAAAAACGAGAAAAGATTATGAAGACATTGC
TATTAAACTTGGAACAGACAAAGAATActaccgaaaaatcaaactgaaag
TATGGGATGGCCGTCTGTTGTCACCTTTGTTTAATACTCAACAATATACA
CTGGActtagaaaagaaattttacaaaatgtgGCAGAGATATGAAGGAGG
TCAATCTCCTGATCATTTAACAGATTGAAtaacttgtttttaacttttgt
agTAACCATAATTATTATCATAATATTCTCTATTTCTATATTATCTTTTA
ATTTTATACTTTAATCAGAGatttaatttctcaaatttcgaggtgttata
attattttaaatgatctgtattaatgttttatttttaaatgaagccTTTC
TTGTTCGAAAATGTTGGTTAATATTTTGCGACTTGTGAAAGCCATTCTTA
AATTCGCGATTTAAAAATCATAACGTGACAAAGATTTTgagtattttaag
attttttaatgACAAAAAGAGAGTTAATccataatctttttaaaaatcgt
CAAACTTATAAAATATTATCATAACTTATGTGTATGCAATTACttataat
ttttgtaaatagatTCCATTTTGTGTTCGGTGTTTTGAAGCAGTAGAAAG
TAAGCGAAGTTGAAAATATACTGTAAGTCTTTAAGTATATAAGATAAATC
CGAACATTTGTCTTTAGTTTTTCGGTTTTGATTTCTCACCAATATGAAAT
TAAATTTCTTAGATTTTGGTGAGATCtacacttttatttttttaagcaaC
CCTatttttcgggtcagggctCGGGTTGCTTGGCATTCTAGCACAtgtga
aataaaatgaaaaatttgctttgaccacccctgatattataccattaTAC
CATCTtttgccatggttagatcatctaaatagcttttattttactttaCG
AAACATTGACTAAC Run BLAST on NCBI transcript from alignment at scaffold_455:349568..350974+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066431 ID=TCONS_00066431|Name=TCONS_00066431|organism=Clytia hemisphaerica|type=transcript|length=1407bp|location=Sequence derived from alignment at scaffold_455:349568..350974+ (Clytia hemisphaerica)
CACTACAGGAATGGACGTTTTATGGGCAGGTTGCCCTATGGTCACCTTGC
CTTTAGAGACATTAGCTTCACGTGTAGCAGCTTCTCAGATGCACGCGTTA
GGAGTTTCAGAGTTGGTCGCAAAAACGAGAAAAGATTATGAAGACATTGC
TATTAAACTTGGAACAGACAAAGAATAGTAAGTTTTAATTAAACAGTTTT
ATTTCTAAGGCTTTGTCGGTTTTATTAAGTCTCATCTCTTTTGacgaata
gacgatatcggcttaacgaaattctccccgaatgattacccatgatgcat
tgcgcaaaaaattcagtaagtcaatattgcccgtgaattttttttgcgca
atgcatcatgggcaATCATttggggagaattcggaaagccgatatcgtct
attacagCATTGCTCTCACATTTTGAGCGATGCACCGTTACACGATTTTC
CCAATCAAGACTCGTTGTCTGCTTAAGTTACCCAATACCCAAttctaatt
ttctaattttacttttttagctaccgaaaaatcaaactgaaagTATGGGA
TGGCCGTCTGTTGTCACCTTTGTTTAATACTCAACAATATACACTGGAct
tagaaaagaaattttacaaaatgtgGCAGAGATATGAAGGAGGTCAATCT
CCTGATCATTTAACAGATTGAAtaacttgtttttaacttttgtagTAACC
ATAATTATTATCATAATATTCTCTATTTCTATATTATCTTTTAATTTTAT
ACTTTAATCAGAGatttaatttctcaaatttcgaggtgttataattattt
taaatgatctgtattaatgttttatttttaaatgaagccTTTCTTGTTCG
AAAATGTTGGTTAATATTTTGCGACTTGTGAAAGCCATTCTTAAATTCGC
GATTTAAAAATCATAACGTGACAAAGATTTTgagtattttaagatttttt
aatgACAAAAAGAGAGTTAATccataatctttttaaaaatcgtCAAACTT
ATAAAATATTATCATAACTTATGTGTATGCAATTACttataatttttgta
aatagatTCCATTTTGTGTTCGGTGTTTTGAAGCAGTAGAAAGTAAGCGA
AGTTGAAAATATACTGTAAGTCTTTAAGTATATAAGATAAATCCGAACAT
TTGTCTTTAGTTTTTCGGTTTTGATTTCTCACCAATATGAAATTAAATTT
CTTAGATTTTGGTGAGATCtacacttttatttttttaagcaaCCCTattt
ttcgggtcagggctCGGGTTGCTTGGCATTCTAGCACAtgtgaaataaaa
tgaaaaatttgctttgaccacccctgatattataccattaTACCATCTtt
tgccatggttagatcatctaaatagcttttattttactttaCGAAACATT
GACTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066431-exon-scaffold_455-1491911889:349568..349744 | TCONS_00066431-exon-scaffold_455-1491911889:349568..349744 | Clytia hemisphaerica | exon |
| TCONS_00066431-exon-scaffold_455-1510915933:349568..349744 | TCONS_00066431-exon-scaffold_455-1510915933:349568..349744 | Clytia hemisphaerica | exon |
| TCONS_00066431-exon-scaffold_455-1575043694:349568..349744 | TCONS_00066431-exon-scaffold_455-1575043694:349568..349744 | Clytia hemisphaerica | exon |
| TCONS_00066431-exon-scaffold_455-1491911889:350088..350974 | TCONS_00066431-exon-scaffold_455-1491911889:350088..350974 | Clytia hemisphaerica | exon |
| TCONS_00066431-exon-scaffold_455-1510915933:350088..350974 | TCONS_00066431-exon-scaffold_455-1510915933:350088..350974 | Clytia hemisphaerica | exon |
| TCONS_00066431-exon-scaffold_455-1575043694:350088..350974 | TCONS_00066431-exon-scaffold_455-1575043694:350088..350974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:349568..350974 + |
Blast
BLAST of TCONS_00066431 vs. Swiss-Prot (Human)
Match: OGT1 (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3) HSP 1 Score: 157.532 bits (397), Expect = 9.072e-42 Identity = 68/106 (64.15%), Postives = 86/106 (81.13%), Query Frame = 2
Query: 2 TTGMDVLWAGCPMVTLPLETLASRVAASQMHALGVSELVAKTRKDYEDIAIKLGTDKEYYRKIKLKVWDGRLLSPLFNTQQYTLDLEKKFYKMWQRYEGGQSPDHL 319
TTGMDVLWAG PMVT+P ETLASRVAASQ+ LG EL+AK R++YEDIA+KLGTD EY +K++ KVW R+ SPLFNT+QYT++LE+ + +MW+ Y G PDH+
Sbjct: 931 TTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHM 1036
The following BLAST results are available for this feature:
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