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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066425 ID=TCONS_00066425|Name=TCONS_00066425|organism=Clytia hemisphaerica|type=transcript|length=3885bpRun BLAST on NCBI transcript from alignment at scaffold_455:338263..348854+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066425 ID=TCONS_00066425|Name=TCONS_00066425|organism=Clytia hemisphaerica|type=transcript|length=10592bp|location=Sequence derived from alignment at scaffold_455:338263..348854+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066425 vs. Swiss-Prot (Human)
Match: OGT1 (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3) HSP 1 Score: 902.894 bits (2332), Expect = 0.000e+0 Identity = 421/525 (80.19%), Postives = 480/525 (91.43%), Query Frame = 3
Query: 414 NAEGSVQTVSTLALAEAAHREYQAGNYESAEKLCMQWWRRETDSTGCLLLLSSIHFQCRRLDQSAQFSQLAIKQNPMLAEAFSNLGNVLKEKGQVKDALANYRHAVKLKPDFIDGYINLAAALVTAGDLEGAVQAYATALNYNPELYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVQIDQNFLDAYINLGNVLKEARIFDRAVTAYLRALTINPNHAIVHGNLACVYYEQGLIDLAVDTYKRAIELQPNFPDAYCNLANALKEQGKVEESEECYNTALTLCPSHADSLNNLANIKREQGKIEDSIGLYMKALQVLPDFAVGYSNLACVLQEQGRLKEALLYYQEAVRIHPTFADAYSNMGNALKEMQDIQGAIQCYTRAIQINPGFADAHSNLASVYKDSGNIAEAIQSYRTALKLKPEFPDAYCNLAHCLQIICDWNDYDNRMKKLLTIVDDQLGKNRLPSVHPHHTMLYPLSPQQRKAIANRHGNLCLDKV 1988
+ E + + +S LAE AHREYQAG++E+AE+ CMQ WR+E D+TG LLLLSSIHFQCRRLD+SA FS LAIKQNP+LAEA+SNLGNV KE+GQ+++A+ +YRHA++LKPDFIDGYINLAAALV AGD+EGAVQAY +AL YNP+LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV +D NFLDAYINLGNVLKEARIFDRAV AYLRAL+++PNHA+VHGNLACVYYEQGLIDLA+DTY+RAIELQP+FPDAYCNLANALKE+G V E+E+CYNTAL LCP+HADSLNNLANIKREQG IE+++ LY KAL+V P+FA +SNLA VLQ+QG+L+EAL++Y+EA+RI PTFADAYSNMGN LKEMQD+QGA+QCYTRAIQINP FADAHSNLAS++KDSGNI EAI SYRTALKLKP+FPDAYCNLAHCLQI+CDW DYD RMKKL++IV DQL KNRLPSVHPHH+MLYPLS RKAIA RHGNLCLDK+
Sbjct: 11 STEPTKRMLSFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKI 535 HSP 2 Score: 405.216 bits (1040), Expect = 5.615e-121 Identity = 198/380 (52.11%), Postives = 246/380 (64.74%), Query Frame = 1
Query: 2764 I*VMWLGYPGTSGATYMDYIITDKETSPLKYTEHYSEKFAYMPHTFFVGDHKQMFPHLIKDVTQEKR---------------------------------------NVNTINSATNTTSVITTKGVEQYIEERIDQRK----------------EEVSGTKDSGERVPETLPQMSRASYGLPDDAFVFCNFNQLYKIDPQTFESWCNILTQVPNSVLWLLRFPQVGETNVKAQAVAHGVAEERIIFSNVAPKEEHVRRGQLGDVCLDTPLCNGHTTGMDVLWAGCPMVTLPLETLASRVAASQMHALGVSELVAKTRKDYEDIAIKLGTDKEYYRKIKLKVWDGRLLSPLFNTQQYTLDLEKKFYKMWQRYEGGQSPDHL 3738
I MWLGYPGTSGA +MDYIITD+ETSP + E YSEK AYMPHTFF+GDH MFPHL K + + N ++ N+A N VI + + + E I++ + +++ +GE VP T+ +R+ YGLP+DA V+CNFNQLYKIDP T + W NIL +VPNSVLWLLRFP VGE N++ A G+ + RIIFS VAPKEEHVRRGQL DVCLDTPLCNGHTTGMDVLWAG PMVT+P ETLASRVAASQ+ LG EL+AK R++YEDIA+KLGTD EY +K++ KVW R+ SPLFNT+QYT++LE+ + +MW+ Y G PDH+
Sbjct: 658 IQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNM-PVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHM 1036 The following BLAST results are available for this feature:
BLAST of TCONS_00066425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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