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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066396 ID=TCONS_00066396|Name=TCONS_00066396|organism=Clytia hemisphaerica|type=transcript|length=832bp
aacaagacAATACAAACAACAAGAAGCATTTGGTTTGAAACTGACAAGGA
CATAAGTGGGCAAACCAAGGAATGTGTAGATACCCTTGAGGTTTCGGCAA
ATAACCAAGGACTGGCTGTACTATGATTGGATCCACGTGCAGCTGAGCAG
gataaaaacatttaaaatgtcTTCGCTGACGGATCAAACTGAATATCTAC
GAAAAAAGAAGGAAGAAATCCTTGCCAAAAAGAAAGCACAAGAAGAACAG
AAAAAGCAGGGAGTAAAACCTGAATCTACGGTTTCCTTTGCTAATGATGg
gagttttttagaaaaattcaaatccatacaaaatcaaaccaaaactCCAG
ACATTAAAAAAGAACCGCAAAGTACTGCTGCACCGATGGCGTTTGCGAAT
GATGGAAGTTTCATGGAGCGTTTCAAAGCTATGCAGGAGAAGGGTATCAA
GCAGGAGCCTGACTACCAAAAGATGGAGAATGTGAAGCCGGCAATCAGTA
AAAAGACATCTAGATTCGATCAACGACCTTCATCTACTTCAACATCCGCC
CAAATAATGTCTTCAATCCAGAGGCCTGCCTCTGTCTTTGAAGATAACGG
TATGTccagatttttctttatttgttgttgtttcaGGCTAATATGTGAGA
TACaagatgttgtttttttttgctttgataACGATTTTAGATAAATTCAC
TCTTACTCTTCTAGATACAAAAGCTTTATCTTTGGTATTTCAatcacatt
ttattttaactttccttttactcttttgtgcttagcTGTTATGTGAAGCA
GTTTTTGCAATCTTCAAATGAAAGTGAATAAG Run BLAST on NCBI transcript from alignment at scaffold_455:142005..148597+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066396 ID=TCONS_00066396|Name=TCONS_00066396|organism=Clytia hemisphaerica|type=transcript|length=6593bp|location=Sequence derived from alignment at scaffold_455:142005..148597+ (Clytia hemisphaerica)
aacaagacAATACAAACAACAAGAAGCATTTGGTTTGAAACTGACAAGGA
CATAAGTGGGCAAACCAAGGAATGTGTAGATACCCTTGAGGTTTCGGCAA
ATAACCAAGGACTGGCTGTACTATGATTGGATCCACGTGCAGCTGAGCAG
GTACCTCATATTCTTCTCTGACTCGATTCATGATGAACCTGTTTAAAATC
TTATTCTTGGTTTTCATCTGGCAACTCACCAGAGAAGAGGTTTCATTAAA
CCAAGGGAATTCTCTACTCTGCTGCAAAACCCTGTCTAAGAATGAAATCT
CCTTGTTCTCCTTTGCCCTTTCTCATCAGGAACACCGAAACTATCCATAC
AATCCATACAAAATGAGCACAAGTGCAACACTTCAACAACTACCATTGAT
AATCAGTGGATCGGTCGAATTAAACCCTGGACCAGCTTCGAAAGTGAAAT
ATCCATGTGGCGAATATCAAAAAGCTGTCACTACAGGTGCTTCCATCGCT
TGTGACCTTTGTAATCAATGGTTTCACCGCAAATGTTCATCAATGAGCGA
CCAAATTTACAATTGTCATGTTAACGAGGAGAGTTTGGAGTGGCTTTGTC
CAGGTTGTGCACTGGCAGATATTTCGAACAGTCTCTTTGACACCTCAATC
TCTTCTTGCAGTTCCGCTTCAAGTATtgaaaacaatcttccaaagaAAAA
AGTCAGTAAGCTTCGAATTGTTATCTGTAACTTTCAAAGTATTTACAACA
AAAATGAAGAACTTTCAAATTATCTCATTACAAATGATATAGACATTTTG
ATTGGGACTGAAACACACCTATCTTGTAACATTCTTAACTCTGAGCTTAT
CCCAAAAACAGGCTATCAAATTGTTCATCGGTGTGACCGTAATGATGGGT
ACGGAGGCGTTATCATCATCGCAAAGGAATCTTTGATCACTGAACCCATA
AAGGCTTCTAACAGTCATCAAATAATCGCTGTAAAAGTGGAGACATTCCA
GAAGCCCATAATCATCTCATCTTGCTATCGATCACCAAACAGCTCAATTC
AGGAAAACAATGACCTTGTCCAATCAATAAACAACCTgtccaaaaaattc
aaatcaaaccCTCAGTTTATCGGAGGAGATTTCAATCTACCAGATGTTGA
TTGGGAGTCATACACAATTACTGGATCTCAATACCCTCGAGCACTGAATG
AGCAATATCTTGAGGCATTTGACATAAACAGTCTTTCCCAAGCTGTCAAT
TTTCCAACCAGACAAAAATCTATCTTAGACCTACTCATTACCAACAGACC
GTCCTTCATCGAAAGCTGCAGACCAACACCAGGTTTTGGAGATCACCAGA
CAGCTGTTCTTGCTGACGTTTATTGCCACCCTAAAAGACAGCGACCTGTA
CAACGAAAAATCTACCTCTGGAACCGTGCTAACTTCGACCAGATGAAGCA
AGATGTAAGACAAGCGTCAGACCAATTCTTGGAAAACGAAACAACCGATA
CACCGATCAATAACTTGTGGTTAAAATTCAAAAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATTCAGGAAAACAATG
ACCTTGTCCAATCAATAAACAACCTgtccaaaaaattcaaatcaaaccCT
CAGTTTATCGGAGGAGATTTCAATCTACCAGATGTTGATTGGGAGTCATA
CACAATTACTGGATCTCAATACCCTCAAGCACTGAATGAGCAATATCTTG
AGGCATTTGACATAAACAGTCTTTCCCAAGCTGTCAATTCTCCAACCAGA
CAAAAATCTATCTTAGACCTACTCATTACCAACAGACCGTCCTTCATCAA
AAGCTGCAGACCAACACCAGGTTTTGGAGATCACCAGACAGCTGTTCTTG
CTGACGTTTATTGCCACCCTAAAAGACAGCGACCTGTACAACGAAAAATC
TACCTCTGGAACCGTGCTAACTTCGACCAGATGAAGCAAGATGTAAGACA
AGCGTCAGACCAATTCTTGGAAAACGAAACAACCGATACACCGATCAATA
ACTTGTGGTTAaaattcaaaaatatcattACCACTGCTCAAGAAAGCAAT
GTACCGTGCAAAAATTCAACTAAACGATACAACCAACGGTGGTTTAACCA
ATCATGTAGACGTGCCGTTCGAAAAAAGCAAAGATTATATCATAGATACA
AACGCACAAAGCAATCAGCTGACTGGAACAAATACATAAAAGCTGCAAAG
AAAGCAAGATTGACTTGTAAACAAACTTGTGATAAATTTATCAACgacaa
ttttttatcagaacacAAATCAAATCCGAAAAAAGTTCTACAGTTACATC
AAATCTAAAAAGCAGGATAATATCGGAATCACTTCTTTGCTCTCAAATGG
AAATACTTTTACTGATGACACTCAAATTGCAAAAATCCTCAATAATCAAT
TTCTGAGTGTTTTTTCAGAAGATGACGGNCCAGAGGGAAAAGTAACATCC
GGAATCCCACAAGGATCGGTACTGGGACCCCTGCTGTTTAGTAGTATAGT
ATTGTTTAGTATATATAAATGACATATCACTAGCAGTCACATCCTCAGAG
ATAAGTCTTTTTGCTGATGACGCTCTACTTTACAAATCcatcaaatcaat
caaagatGCCAGAGATCTGCAAAATGACTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAATTAAATTCCTCAGTAATCTAAGTTCTTTTTTCTGCAATATTCAA
TTACCTCTTAATCCAAAGTGGTtgcctttttattaaattctagattttat
tatatttagacagattttattttattaccattttattttacattcaggAA
ATTGTACGTATGTACCCTCTGAATTATTGAATAAAAGTAGAAGAAGAAGT
ACCGAGCCTACCgatgcgtcggcagggtcctgtttTTTAGCTATATCTAA
CATACATCGTGTACATGAAATTTACACCCTTGAAACTCTTGAGATTCAGA
AACCCGCTGGAAGGAATTGGGCCAGTTCCAGAATACACCTTTCCAGTAAT
TAAAACTCCCCGGAAATAATAATGTTACTACTCCACccattgtgtataaa
attgtttgcaGTTTGGGGCAAGATAAACGAATCTGTCTTTGTCTGGGAGC
tgaagggaaagtgggttttcagctttTAACTTGTGATAGCGatctttttt
tttggcaaaaaatttgtTCAGGGTTAGaaatagcctggagatccatgcta
tgatttcttattctatatactgatcgTACGCGCGTTTGGTTTAGCAACGC
GAACGCAAACTAccgatgtctaaacttttcaatatatctccagaactaac
agactttttgaaattctgtaaaaaggttcaagttcctgaatagttttact
atttTCTGTGAAAAGatcataaccatcagtgaaatactcgttcatctatt
taagattgaagacaaaaattatcgaagaaaaataaaccttgagcacaaat
gcttttttaaacacttttttacaccgaaaaacaaataacctTCCCCCCct
caaacattgaagaagcctctactaattaaagtaaatgagataagataaga
taaaaccttaaaatcaaccagaatttacaaccttttgtccaaagcaaaag
acgtgcttttcccGTCGCCATCTTGTAttagaatgagaattattttcggt
tccagttcacatggaaattttttcatccaatcagattgcgcaatttcact
tttgctttctctagtccaataagactgcaggatttgagtcatgtgacatc
tctattgaaaaatagagaaaaaacccgcacaaaataaaatagaaatacag
gggggaCACACTagtggctacaggaactgaaagcaaacaactaaggccaa
tatttttgggttttctgaaggacaaaaggtataggaagctttactgaagg
agggataaggctggaactatctatttaaaagatatggacaaaaaatggCA
CTAAatggcacttttttgggtgataattaagattttacttagaaacttta
attctcttacccccgtcctgcccccccccctgatatgagcaaggaaATCA
TGTTGAAAATtactactgaaaatttcagatcaaaacaaacaaaaaaagct
ggaaaaagctggtttttgactgtttctgatcctaaggtgcttatttttat
catttttccaggataaaaacatttaaaatgtcTTCGCTGACGGATCAAAC
TGAATATCTACGAAAAAAGAAGGAAGAAATCCTTGCCAAAAAGAAAGCAC
AAGAAGAACAGAAAAAGCAGGGAGTAAAACCTGAATCTACGGTTTCCTTT
GCTAATGATGggagttttttagaaaaattcaaatccatacaaaatcaaac
caaaactCCAGACATTAAAAAAGAACCGCAAAGTACTGCTGCACCGATGG
CGTTTGCGAATGATGGAAGTTTCATGGAGCGTTTCAAAGCTATGCAGGAG
AAGGGTATCAAGCAGGAGCCTGACTACCAAAAGATGGAGAATGTGAAGCC
GGCAATCAGTAAAAAGACATCTAGATTCGATCAACGACCTTCATCTACTT
CAACATCCGCCCAAATAATGTCTTCAATCCAGAGGCCTGCCTCTGTCTTT
GAAGATAACGGTATGTccagatttttctttatttgttgttgtttcaGGCT
AATATGTGAGATACaagatgttgtttttttttgctttgataACGATTTTA
GATAAATTCACTCTTACTCTTCTAGATACAAAAGCTTTATCTTTGGTATT
TCAatcacattttattttaactttccttttactcttttgtgcttagcTGT
TATGTGAAGCAGTTTTTGCAATCTTCAAATGAAAGTGAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066396-exon-scaffold_455-1491911889:142005..142154 | TCONS_00066396-exon-scaffold_455-1491911889:142005..142154 | Clytia hemisphaerica | exon |
| TCONS_00066396-exon-scaffold_455-1510915933:142005..142154 | TCONS_00066396-exon-scaffold_455-1510915933:142005..142154 | Clytia hemisphaerica | exon |
| TCONS_00066396-exon-scaffold_455-1575043694:142005..142154 | TCONS_00066396-exon-scaffold_455-1575043694:142005..142154 | Clytia hemisphaerica | exon |
| TCONS_00066396-exon-scaffold_455-1491911889:147916..148597 | TCONS_00066396-exon-scaffold_455-1491911889:147916..148597 | Clytia hemisphaerica | exon |
| TCONS_00066396-exon-scaffold_455-1510915933:147916..148597 | TCONS_00066396-exon-scaffold_455-1510915933:147916..148597 | Clytia hemisphaerica | exon |
| TCONS_00066396-exon-scaffold_455-1575043694:147916..148597 | TCONS_00066396-exon-scaffold_455-1575043694:147916..148597 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:142005..148597 + |
Blast
The following BLAST results are available for this feature:
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