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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066369 ID=TCONS_00066369|Name=TCONS_00066369|organism=Clytia hemisphaerica|type=transcript|length=1053bp
TCTTTAACCCTGAGATGAGTTGTTGTGTTATCATGTCATTGGAATAGTTT
ATTTCAATCTCAGGTTCGTGTGTCGTGCAGGTAACTTTGAACTGGCAAAG
AACAGCTTGGGATTTAAGGCGGGTAACTGTCTCGCCGTCCATCTGGGTTA
AACGGAAGAAGTTAATTTGGTGGACCTCTTTGTGGGTACCTTTGACTGCT
ACACGTTTGATGTGTTCGAGTAGGTTTGCTTCGGATGATGTGTCGAGGGT
ATCAGACCCAATGTATTCGAATAAAAGTTTATTAACCTCCTGGTAGCATG
ATGCATGAAGCTCCATACGTAAAATGTTGNACTGCTACACGTTTGATGTG
TTCGAGTAGGTTTGCTTCGGATGATGTGTCGAGGGTATCAGACCCAATGT
ATTCGAATAAAAGTTTATTAACCTCCTGGGAGCATGATGCACGAAGCTCC
ATACGTAAAATGTTCTGATCAGTGATACCTGTCATTGCCTTGTAACGGTT
CCAACTGTCTTTAAACAATTCCCATTCTCGTTCGTCAGTATTTATGTTGA
TAATTGGGCGATCCGGGGCTTTGGTTTTTtgccctggcattggctggtcc
GTTGTTTGGTTGTTGGTTGGCACGGAGTACTGCATTTTCTGTTTGTAAGG
TTTGGAGTTGCTCCATTTGTTGCCTCATCATTTCGATcacttgttgaaat
tgatcattCGTCGCcatgtttgttattgtttgagTTTCGAAATCGAAAGT
TGTTTTGGCGGATTGTTTCTAGCGTTGGCGCGTGTGTTCGTGGGCGGGCG
GTGTCTTCGTTAGGTTGACGGGCGGCGCTCGCTGGATTACGGTTTACGGG
TTATGGTGAGTGTGACCACGTCTAccaaaacaagatggcgaacAAGGCGA
GTGGCGTACCTTGTGGAATCGTGTAGGATGGTTGACAATCGGTGAGTGTT
CGCTATATTTTGAGTTTTCCTTCAGAAGTATCCCACTTCTGACACCATGC
AGGGTTCGTGGGAAACTTAATAAGAGTTTGATAGCAAACGAATGGAATAG
TAA Run BLAST on NCBI protein sequence of TCONS_00066369-protein >TCONS_00066369-protein ID=TCONS_00066369-protein|Name=TCONS_00066369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MQYSVPTNNQTTDQPMPGQKTKAPDRPIININTDEREWELFKDSWNRYKA
MTGITDQNILRMELRASCSQEVNKLLFEYIGSDTLDTSSEANLLEHIKRV
AXQHFTYGASCIMLPGG Run BLAST on NCBI transcript from alignment at scaffold_452:132953..134005 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066369 ID=TCONS_00066369|Name=TCONS_00066369|organism=Clytia hemisphaerica|type=transcript|length=1053bp|location=Sequence derived from alignment at scaffold_452:132953..134005 (Clytia hemisphaerica)
TTACTATTCCATTCGTTTGCTATCAAACTCTTATTAAGTTTCCCACGAAC
CCTGCATGGTGTCAGAAGTGGGATACTTCTGAAGGAAAACTCAAAATATA
GCGAACACTCACCGATTGTCAACCATCCTACACGATTCCACAAGGTACGC
CACTCGCCTTgttcgccatcttgttttggTAGACGTGGTCACACTCACCA
TAACCCGTAAACCGTAATCCAGCGAGCGCCGCCCGTCAACCTAACGAAGA
CACCGCCCGCCCACGAACACACGCGCCAACGCTAGAAACAATCCGCCAAA
ACAACTTTCGATTTCGAAActcaaacaataacaaacatgGCGACGaatga
tcaatttcaacaagtgATCGAAATGATGAGGCAACAAATGGAGCAACTCC
AAACCTTACAAACAGAAAATGCAGTACTCCGTGCCAACCAACAACCAAAC
AACggaccagccaatgccagggcaAAAAACCAAAGCCCCGGATCGCCCAA
TTATCAACATAAATACTGACGAACGAGAATGGGAATTGTTTAAAGACAGT
TGGAACCGTTACAAGGCAATGACAGGTATCACTGATCAGAACATTTTACG
TATGGAGCTTCGTGCATCATGCTCCCAGGAGGTTAATAAACTTTTATTCG
AATACATTGGGTCTGATACCCTCGACACATCATCCGAAGCAAACCTACTC
GAACACATCAAACGTGTAGCAGTNCAACATTTTACGTATGGAGCTTCATG
CATCATGCTACCAGGAGGTTAATAAACTTTTATTCGAATACATTGGGTCT
GATACCCTCGACACATCATCCGAAGCAAACCTACTCGAACACATCAAACG
TGTAGCAGTCAAAGGTACCCACAAAGAGGTCCACCAAATTAACTTCTTCC
GTTTAACCCAGATGGACGGCGAGACAGTTACCCGCCTTAAATCCCAAGCT
GTTCTTTGCCAGTTCAAAGTTACCTGCACGACACACGAACCTGAGATTGA
AATAAACTATTCCAATGACATGATAACACAACAACTCATCTCAGGGTTAA
AGA Coding sequence (CDS) from alignment at scaffold_452:132953..134005 >TCONS_00066369 ID=TCONS_00066369|Name=TCONS_00066369|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_452:132953..134005 (Clytia hemisphaerica)
ATGCAGTACTCCGTGCCAACCAACAACCAAACAACggaccagccaatgcc
agggcaAAAAACCAAAGCCCCGGATCGCCCAATTATCAACATAAATACTG
ACGAACGAGAATGGGAATTGTTTAAAGACAGTTGGAACCGTTACAAGGCA
ATGACAGGTATCACTGATCAGAACATTTTACGTATGGAGCTTCGTGCATC
ATGCTCCCAGGAGGTTAATAAACTTTTATTCGAATACATTGGGTCTGATA
CCCTCGACACATCATCCGAAGCAAACCTACTCGAACACATCAAACGTGTA
GCAGTNCAACATTTTACGTATGGAGCTTCATGCATCATGCTACCAGGAGG
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066369-exon-scaffold_452-1491911889:132953..134005 | TCONS_00066369-exon-scaffold_452-1491911889:132953..134005 | Clytia hemisphaerica | exon |
| TCONS_00066369-exon-scaffold_452-1510915933:132953..134005 | TCONS_00066369-exon-scaffold_452-1510915933:132953..134005 | Clytia hemisphaerica | exon |
| TCONS_00066369-exon-scaffold_452-1575043694:132953..134005 | TCONS_00066369-exon-scaffold_452-1575043694:132953..134005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_452 | supercontig | scaffold_452:132953..134005 . |
Blast
The following BLAST results are available for this feature:
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