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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066365 ID=TCONS_00066365|Name=TCONS_00066365|organism=Clytia hemisphaerica|type=transcript|length=1247bp
NNcgaaagaaaataaatgaacaACAACATGAACTGGAAAGTTTAAAGAGT
AAACTCAGTACCGATCCTGGCCTTCACACTttcgaatttgtcgaacaaaA
GTTGGAGACCAAGATAGAAAgcaaaatcgaatccctcaagGAAATGCTTG
AGGAGACGATTAAAAAAGAATGTAAGTTTCTGTCACAGACCTATGCCAAT
GTTACCGGCTCAAAGGAGTCCCCGGATTCAAAAGCCCTGAAAGAAGTGAT
CAGGGACGCAATACGAGAAGAAGAAACCGAAGAATACAATAAACAAAAAC
GCGCCTCAAATGTCATCGTACATGGCGTTGTTGAGCAAAGTATTAATGAT
GACTAAACCTGGGCTTCAAACTTGATTAAGGATACCCACTCACGCAGTCT
TATCAATTGTGTAGCAAGATTGGGTAAGGAGGAAGAAGGAAAGAAACGTC
CATTGTTAGTCTCTCTTAACGATGAGTCTGATAAATGGAATTTACTTGGC
AATCTACAGCACTGAAGGATAATGCGACGTACAAAGGTATTAGCGTTACT
GAGGATCTCACCCCTGATGAAAGAAAACAATTCAAGTTACTCTCAACAGA
AGCCAAAACAAGAAACTCACAAGAGAAATCAGAAACCTATATCTATCGTG
TGAGAGGCAACTCAAAAAACAGCTTTTACCTGAAGAAGATCAAAGTCGCA
AACCACCAATAAAAACAAGAGAAACGCATAaacaagtatcaaaaaacaaa
aacgagaaccaatcaaacacaatttcggaaataaaaattatgtatACAAA
TGCCGACCAGCTaacaacaatgaaaaaactaCAACTAGAAGAACTCATAA
CAAAGGAATATCCACATTTTATTGCAATCTGTGAAGTCAAACCAAAGAAC
GGTGAAAGATGGATACACAGTCGTAAACCACACCAATACTGAGAACAATA
CAGGACGTGGTATCGTCATCCTAGGGTATACCAGTGTAGACCACCTTACA
GTTGACATTGAATGTCCTGTAGCACTGGAGGAGGCGTGCATCATCGAAGT
ACGTCTGGCTGGAAAAGATATGCTTTGCTTTGCATGCGTCTACCGCAGTC
CAACGAACCAATCAAACTCGAGAAAATAATGCCAATCTTAACCAGCTTTT
ACGAATTATATCAGAAGATAAGAGATACACGCATCGTTGCATCATTGGCG
ACTTCAATTTTCCAACTATAAATTGGAAGAACTGGACAAGCCCACAT Run BLAST on NCBI protein sequence of TCONS_00066365-protein >TCONS_00066365-protein ID=TCONS_00066365-protein|Name=TCONS_00066365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
RKKINEQQHELESLKSKLSTDPGLHTFEFVEQKLETKIESKIESLKEMLE
ETIKKECKFLSQTYANVTGSKESPDSKALKEVIRDAIREEETEEYNKQKR
ASNVIVHGVVEQSINDD Run BLAST on NCBI transcript from alignment at scaffold_452:87990..89236 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066365 ID=TCONS_00066365|Name=TCONS_00066365|organism=Clytia hemisphaerica|type=transcript|length=1247bp|location=Sequence derived from alignment at scaffold_452:87990..89236 (Clytia hemisphaerica)
ATGTGGGCTTGTCCAGTTCTTCCAATTTATAGTTGGAAAATTGAAGTCGC
CAATGATGCAACGATGCGTGTATCTCTTATCTTCTGATATAATTCGTAAA
AGCTGGTTAAGATTGGCATTATTTTCTCGAGTTTGATTGGTTCGTTGGAC
TGCGGTAGACGCATGCAAAGCAAAGCATATCTTTTCCAGCCAGACGTACT
TCGATGATGCACGCCTCCTCCAGTGCTACAGGACATTCAATGTCAACTGT
AAGGTGGTCTACACTGGTATACCCTAGGATGACGATACCACGTCCTGTAT
TGTTCTCAGTATTGGTGTGGTTTACGACTGTGTATCCATCTTTCACCGTT
CTTTGGTTTGACTTCACAGATTGCAATAAAATGTGGATATTCCTTTGTTA
TGAGTTCTTCTAGTTGtagttttttcattgttgttAGCTGGTCGGCATTT
GTatacataatttttatttccgaaattgtgtttgattggttctcgttttt
gttttttgatacttgttTATGCGTTTCTCTTGTTTTTATTGGTGGTTTGC
GACTTTGATCTTCTTCAGGTAAAAGCTGTTTTTTGAGTTGCCTCTCACAC
GATAGATATAGGTTTCTGATTTCTCTTGTGAGTTTCTTGTTTTGGCTTCT
GTTGAGAGTAACTTGAATTGTTTTCTTTCATCAGGGGTGAGATCCTCAGT
AACGCTAATACCTTTGTACGTCGCATTATCCTTCAGTGCTGTAGATTGCC
AAGTAAATTCCATTTATCAGACTCATCGTTAAGAGAGACTAACAATGGAC
GTTTCTTTCCTTCTTCCTCCTTACCCAATCTTGCTACACAATTGATAAGA
CTGCGTGAGTGGGTATCCTTAATCAAGTTTGAAGCCCAGGTTTAGTCATC
ATTAATACTTTGCTCAACAACGCCATGTACGATGACATTTGAGGCGCGTT
TTTGTTTATTGTATTCTTCGGTTTCTTCTTCTCGTATTGCGTCCCTGATC
ACTTCTTTCAGGGCTTTTGAATCCGGGGACTCCTTTGAGCCGGTAACATT
GGCATAGGTCTGTGACAGAAACTTACATTCTTTTTTAATCGTCTCCTCAA
GCATTTCcttgagggattcgattttgcTTTCTATCTTGGTCTCCAACTtt
tgttcgacaaattcgaaAGTGTGAAGGCCAGGATCGGTACTGAGTTTACT
CTTTAAACTTTCCAGTTCATGTTGTtgttcatttattttctttcgNN Coding sequence (CDS) from alignment at scaffold_452:87990..89236 >TCONS_00066365 ID=TCONS_00066365|Name=TCONS_00066365|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_452:87990..89236 (Clytia hemisphaerica)
TTAGTCATCATTAATACTTTGCTCAACAACGCCATGTACGATGACATTTG
AGGCGCGTTTTTGTTTATTGTATTCTTCGGTTTCTTCTTCTCGTATTGCG
TCCCTGATCACTTCTTTCAGGGCTTTTGAATCCGGGGACTCCTTTGAGCC
GGTAACATTGGCATAGGTCTGTGACAGAAACTTACATTCTTTTTTAATCG
TCTCCTCAAGCATTTCcttgagggattcgattttgcTTTCTATCTTGGTC
TCCAACTtttgttcgacaaattcgaaAGTGTGAAGGCCAGGATCGGTACT
GAGTTTACTCTTTAAACTTTCCAGTTCATGTTGTtgttcatttattttct
ttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066365-exon-scaffold_452-1491911889:87990..89236 | TCONS_00066365-exon-scaffold_452-1491911889:87990..89236 | Clytia hemisphaerica | exon |
| TCONS_00066365-exon-scaffold_452-1510915933:87990..89236 | TCONS_00066365-exon-scaffold_452-1510915933:87990..89236 | Clytia hemisphaerica | exon |
| TCONS_00066365-exon-scaffold_452-1575043694:87990..89236 | TCONS_00066365-exon-scaffold_452-1575043694:87990..89236 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_452 | supercontig | scaffold_452:87990..89236 . |
Blast
The following BLAST results are available for this feature:
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