TCONS_00066357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066357
Unique NameTCONS_00066357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066357 ID=TCONS_00066357|Name=TCONS_00066357|organism=Clytia hemisphaerica|type=transcript|length=626bp
AGAAGGGTCATATCTTTTTTGCTTTACTCTTCTTGGTGGAACATGATTTT
GTGCAATTTGAAAGGTGATTTTGTAGAAGCTTTCTAATATGTCATttgga
gtttttttattttaattttctaaACTGGCATCGAGATCTGACCAGCGAAC
AGTGTCACTAAAGAAGTTCAAGGAGTCGAAGAGTGAAAGCTTAGGTTGAC
TGTGGGATGGCTCGGTAGTAGCATTTGGTTGATATAAGGTAGCCATTTCA
ATTAACGAGTGATGGGAAATGCTATTTAGAGTCGTAAGAATATTGTGGGA
GAGAATCAAACTGTCATTATTGGTAAGTACAAGATCCAAGGTGTTCCCAT
CCTTATGGGTTGGTTTGGTAATGTATTGGTTCATATGTAGATCTTGAAGG
AATTGATCCAGAAACTCTATCATTTTAGGTTCTTCTGGATACGATGCTTG
TTTCGGGATACACAAGGGCCATGCTATGTGGGGTAAATTGAAATCTCCAC
CAATAATTACATCTGGTGTGGGACTGCCAATGTCCAGAATCTTTGATTTC
AACTTAGATATCCCGTCTTGAAATTCATTCAGTCTTGAAGGGTATCCATT
CGCTGAATTATCTGGTTGGCGGTAAA
Run BLAST on NCBI

protein sequence of TCONS_00066357-protein

>TCONS_00066357-protein ID=TCONS_00066357-protein|Name=TCONS_00066357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
YRQPDNSANGYPSRLNEFQDGISKLKSKILDIGSPTPDVIIGGDFNLPHI
AWPLCIPKQASYPEEPKMIEFLDQFLQDLHMNQYITKPTHKDGNTLDLVL
TNNDSLILSHNILTTLNSISHHSLIEMATLYQPNATTEPSHSQPKLSLFD
SLNFFSDTVRWSDLDASLEN
Run BLAST on NCBI

transcript from alignment at scaffold_452:76405..77030

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066357 ID=TCONS_00066357|Name=TCONS_00066357|organism=Clytia hemisphaerica|type=transcript|length=626bp|location=Sequence derived from alignment at scaffold_452:76405..77030 (Clytia hemisphaerica)
TTTACCGCCAACCAGATAATTCAGCGAATGGATACCCTTCAAGACTGAAT GAATTTCAAGACGGGATATCTAAGTTGAAATCAAAGATTCTGGACATTGG CAGTCCCACACCAGATGTAATTATTGGTGGAGATTTCAATTTACCCCACA TAGCATGGCCCTTGTGTATCCCGAAACAAGCATCGTATCCAGAAGAACCT AAAATGATAGAGTTTCTGGATCAATTCCTTCAAGATCTACATATGAACCA ATACATTACCAAACCAACCCATAAGGATGGGAACACCTTGGATCTTGTAC TTACCAATAATGACAGTTTGATTCTCTCCCACAATATTCTTACGACTCTA AATAGCATTTCCCATCACTCGTTAATTGAAATGGCTACCTTATATCAACC AAATGCTACTACCGAGCCATCCCACAGTCAACCTAAGCTTTCACTCTTCG ACTCCTTGAACTTCTTTAGTGACACTGTTCGCTGGTCAGATCTCGATGCC AGTttagaaaattaaaataaaaaaactccaaATGACATATTAGAAAGCTT CTACAAAATCACCTTTCAAATTGCACAAAATCATGTTCCACCAAGAAGAG TAAAGCAAAAAAGATATGACCCTTCT

Coding sequence (CDS) from alignment at scaffold_452:76405..77030

>TCONS_00066357 ID=TCONS_00066357|Name=TCONS_00066357|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_452:76405..77030 (Clytia hemisphaerica)
TACCGCCAACCAGATAATTCAGCGAATGGATACCCTTCAAGACTGAATGA
ATTTCAAGACGGGATATCTAAGTTGAAATCAAAGATTCTGGACATTGGCA
GTCCCACACCAGATGTAATTATTGGTGGAGATTTCAATTTACCCCACATA
GCATGGCCCTTGTGTATCCCGAAACAAGCATCGTATCCAGAAGAACCTAA
AATGATAGAGTTTCTGGATCAATTCCTTCAAGATCTACATATGAACCAAT
ACATTACCAAACCAACCCATAAGGATGGGAACACCTTGGATCTTGTACTT
ACCAATAATGACAGTTTGATTCTCTCCCACAATATTCTTACGACTCTAAA
TAGCATTTCCCATCACTCGTTAATTGAAATGGCTACCTTATATCAACCAA
ATGCTACTACCGAGCCATCCCACAGTCAACCTAAGCTTTCACTCTTCGAC
TCCTTGAACTTCTTTAGTGACACTGTTCGCTGGTCAGATCTCGATGCCAG
Tttagaaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041530XLOC_041530Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066357-proteinTCONS_00066357-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066357-exon-scaffold_452-1491911889:76405..77030TCONS_00066357-exon-scaffold_452-1491911889:76405..77030Clytia hemisphaericaexon
TCONS_00066357-exon-scaffold_452-1510915933:76405..77030TCONS_00066357-exon-scaffold_452-1510915933:76405..77030Clytia hemisphaericaexon
TCONS_00066357-exon-scaffold_452-1575043694:76405..77030TCONS_00066357-exon-scaffold_452-1575043694:76405..77030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_452supercontigscaffold_452:76405..77030 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26655 1.42232 2.75891 2.02837 1.08818 1.65177 0.901543 1.35915 0.30821 0.37729 1.29294 1.03315 0.549728 0.85619 0.118895 0.0580432 0.928086 0.726999 0.701399 1.16694 0.607255 0.788673 0.461567 0.417528 0.975755 1.27065 0.958852 0.742471 1.05923 1.03554
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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