TCONS_00066323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066323
Unique NameTCONS_00066323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066323 ID=TCONS_00066323|Name=TCONS_00066323|organism=Clytia hemisphaerica|type=transcript|length=313bp
AACTGATCGGTTGGAAGATGGGTTGTTTCATTCAATCCTTGATATGGATG
AGaaaaatggaaaCACAGAAATTCAGTCAAACCTAGTTTCCGCGATGAAA
GGAATTGGTATCACCCTCAAATTCTGGAGGAACAAAAAGAACAAGGTGGA
ATGGACCTCTTTAATGGGAAATGATAAGAAAAGAATGCTAGCCAAGTTAC
CAGATCACTTTGCCGAGTTCCTGCCCAAAAACTAAGTAGCTCCGACAAGA
CAGTTATGAAAGGCTTTTGAAGAGCTGTACATGATCATGAACCGACCAGA
ATTGACACCAGCT
Run BLAST on NCBI

transcript from alignment at scaffold_452:90067..90675+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066323 ID=TCONS_00066323|Name=TCONS_00066323|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at scaffold_452:90067..90675+ (Clytia hemisphaerica)
AACTGATCGGTTGGAAGATGGGTTGTTTCATTCAATCCTTGATATGGATG
AGGTAAATCAAAGTCTGCATAATAAAAACAATCTAATTAGTCCCTCACAT
GGTTCGGTGTGTAAAGCAAAAATAGTAGCATCAAAGGGTGTGATCTGAGA
TGTCATTGTGCTTCTGTAGTGTGAGAACATATTAGAtataagaattattt
ttttagaaaaatggaaaCACAGAAATTCAGTCAAACCTAGTTTCCGCGAT
GAAAGGAATTGGTATCACCCTCAAATTCTGGAGGAACAAAAAGAACAAGG
TGGAATGGACCTCTTTAATGGGAAATGATAAGAAAAGAATGCTAGCCAAG
TTACCAGATCACTTTGCCGAGTTCCTGCCCAAAAACTAAGTAGCTCCGAC
AAGACAGTTATGAAAGGTAGCTTTGGATCTAACCGAACCATTAATTGAGC
TATTTTTTGTCCTCCATTTTTTCCTCTTCAGAGCTTTCTGAGAAGAAATG
TGTTTGTCTTGATAAatcacaaaaagaaattttgagccatattttcttat
cattttAGGCTTTTGAAGAGCTGTACATGATCATGAACCGACCAGAATTG
ACACCAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041523XLOC_041523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066323-exon-scaffold_452-1491911889:90067..90118TCONS_00066323-exon-scaffold_452-1491911889:90067..90118Clytia hemisphaericaexon
TCONS_00066323-exon-scaffold_452-1510915933:90067..90118TCONS_00066323-exon-scaffold_452-1510915933:90067..90118Clytia hemisphaericaexon
TCONS_00066323-exon-scaffold_452-1575043694:90067..90118TCONS_00066323-exon-scaffold_452-1575043694:90067..90118Clytia hemisphaericaexon
TCONS_00066323-exon-scaffold_452-1491911889:90273..90482TCONS_00066323-exon-scaffold_452-1491911889:90273..90482Clytia hemisphaericaexon
TCONS_00066323-exon-scaffold_452-1510915933:90273..90482TCONS_00066323-exon-scaffold_452-1510915933:90273..90482Clytia hemisphaericaexon
TCONS_00066323-exon-scaffold_452-1575043694:90273..90482TCONS_00066323-exon-scaffold_452-1575043694:90273..90482Clytia hemisphaericaexon
TCONS_00066323-exon-scaffold_452-1491911889:90625..90675TCONS_00066323-exon-scaffold_452-1491911889:90625..90675Clytia hemisphaericaexon
TCONS_00066323-exon-scaffold_452-1510915933:90625..90675TCONS_00066323-exon-scaffold_452-1510915933:90625..90675Clytia hemisphaericaexon
TCONS_00066323-exon-scaffold_452-1575043694:90625..90675TCONS_00066323-exon-scaffold_452-1575043694:90625..90675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_452supercontigscaffold_452:90067..90675 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.37777	1.37969	0.07231	0.438448	0.820939	0.0594413	1.84003	2.10378	2.89634	1.36085	0.915725	0.972994	0.817791	0.593314	2.26435	0	0.0150081	0.85144	0	0.243367	0	1.96215	0.387985	0.110836	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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