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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066322 ID=TCONS_00066322|Name=TCONS_00066322|organism=Clytia hemisphaerica|type=transcript|length=2379bp
ACGAATAACGATATTTTCCAGTAACAAGTTGACTacatttcaaaagaaaa
gtataaaGCTTTCTTAATTCAAAAGAATCACCATACTTAATTTGCTTAGA
AGAAGATAATTCTTTTCGATAAGAGATGAGAATTTTATAAGGATCACCAA
AACGAGAGAGCAACAATTCCTTGGCATAATTGTAACAGTCGCCTCCATCC
TTGTGAATACATCCCTTTATCAATTCCTTAGCTTCACCTGATGTATATTT
GATCAAAAGAATCAGCTTCGCTTTTTGATCACGAATCTTGGTCTCAACaa
cactttcaaaacaagacatgaaaaagtgaaattccaAGGGATtaccatca
aaaacatcaagCGAAACTTCAGGAGCACTCTGCGAATCCAACAAATCACA
CAATCTATCAGCAGAATCTTCAGAAATGACAATGGGTTTTGATGAAGAAG
TTTTAGAGGCTTTAGGTTGAAACACAACATTTGGCTTAGAATTCGACTCA
GGCAAAACAACATCTTTGACAAAAGGAGTAGAAACTTTATAATCAGACAC
TGGCAATTCTTCTTTTCCATGACCGTCAGGAACGAAGGGAGCAGAAAAAG
GTGAAAgtttattttcaatcttcaaaGACCTTTTAGAAAGATTTAAAGAT
TTGTTGTCACTTTCAAAATGGCTTTTATAAACTTGAACTCTAGCCTTTTG
CTTTGCAATTTCTTTTGCCAAACCGTTTTCTTTGTCAGCGTCACGAACCA
CctgatttttctcaaattcagaTTCAGCTTCTAAAGCTGCTAGAGTGACT
TCAGCTTCAATCAATTTATTGGCATTAGAAGATGCATTTGATCGATGAGA
TTTCTTAGAACTGGAACTAGAACTTGAACCAGAACGAGAAGAAGAGTTTC
GTGATCTAGACTTAGTTTGGTTAATTTCAGCAGGAATTTCAATGCTTCGA
ACCCATCTCGTAACANTTCAATCAATTTATTGGCATTAGAAGACGCATTT
GATCGATGAGATTTCTTAGAACTGGAACTAGAACTTGAACCAGAACGAGA
AGAAGAGTTTCGTGATCTAGACTTAGTTTCGTTAATTTCAGCAGGAATTT
CAATGCTTCGAACCCATCTCGTAACAAAAGttttaaaaccaaaaattcTT
TTATCAATGTCCTCGAGCCAGTGAGTTTCGTACTTCGTAGGATCTTCAAC
AGCAGCACTAAATTTTTGATGGTTATAAGTGATATCAAGAAAAATGTTAT
CGACTAATTTCAATTCTTGTCGGACAATTTCGGCATTTGAAGGCTCTTTC
ATGAGAGAATCTATATACTCAATTTTCATAGTCAGTTCTGTTTCCAGAGT
TGTAagtttttctgcaaaaaattcaGCAAGtggttttttctgtttttcaa
tAAGCCTTTTACTCCTCCGAATGGAGGGAATAGGTTCCGAATACATCGAC
ATTTCAAAGAATTAAATATAAGTCTATAACCTTTTTCAACACTTAAGTGA
TTAACAAGGTTTATTGTACAATTACAATTACAATTATCATACAACTCACA
AANNNNNNNNNNNNNNNNAGCTAATCACGAAAATGAAATTATCGAACTTA
ACCTTTATCAAAAACTGAGGAACAAGGTTAAACCTGTGAACAAGTCACCA
AAAAGAATCAAACTTAACCTTTATCAAAAACTGAGGAACAAGGTTAAACC
TGTGAACAAGTCACCAAAAAGAATCGAGCTTAACCTTTATCAAAAACTGA
GGAACAAGGTTAAACCTGTGAACAAGTCACCAAAAAGATGAATGGAAGTG
TAGCACCAAGACCAAATTTTGACAGAAAGCTGCCGTATagagacaaaaat
tcaaaaaatcaaaatcacttGCAGACACACGGGTCCACGAAGCGCAAAAA
ACTCAGTATACAAAAAAAGATTNgacaaaaattcaaaaaatcaaaatcac
ttGCAGACACACGGGTCCACGAAGCGCAAAAAACTCAGTatacaaaaaaa
ggttctctcaAAAATCCAAGAAGGTACACAGACCTTCTGAAGGTAGACCA
ACcttcgagaaaaaaataaaataaaattcaaaaaatcaaaagttcaagCG
ACTCACgagaaatcagaaaaataaataaaaagttgaTACAAAATTACCTT
TACCGAATACTCACCATTCCATACTTACAACATAGAAGTAAAATGATGGT
TCATTGAAACAGCAgcatcataataataataataataataataacgaaTG
TTTTAAGTGGCTGGCTCCGAAAAATTCTAGAGTTTTTAGACAGCTcaaga
attgtttccacgaagggccactACGAACAGAACAAGAACAGTAACAAAAA
GGAACAGgaaaattggattttaaatAATT Run BLAST on NCBI protein sequence of TCONS_00066322-protein >TCONS_00066322-protein ID=TCONS_00066322-protein|Name=TCONS_00066322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MSMYSEPIPSIRRSKRLIEKQKKPLAEFFAEKLTTLETELTMKIEYIDSL
MKEPSNAEIVRQELKLVDNIFLDITYNHQKFSAAVEDPTKYETHWLEDID
KRIFGFKTFVTRWVRSIEIPAEINETKSRSRNSSSRSGSSSSSSSKKSHR
SNASSNANKLIEXLRDGFEALKFLLKLTKLSLDHETLLLVLVQVLVPVLR
NLIDQMHLLMPIN Run BLAST on NCBI transcript from alignment at scaffold_451:1458950..1461328 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066322 ID=TCONS_00066322|Name=TCONS_00066322|organism=Clytia hemisphaerica|type=transcript|length=2379bp|location=Sequence derived from alignment at scaffold_451:1458950..1461328 (Clytia hemisphaerica)
AATTatttaaaatccaattttcCTGTTCCTTTTTGTTACTGTTCTTGTTC
TGTTCGTagtggcccttcgtggaaacaattcttgAGCTGTCTAAAAACTC
TAGAATTTTTCGGAGCCAGCCACTTAAAACAttcgttattattattatta
ttattattatgatgcTGCTGTTTCAATGAACCATCATTTTACTTCTATGT
TGTAAGTATGGAATGGTGAGTATTCGGTAAAGGTAATTTTGTAtcaactt
tttatttatttttctgatttctcGTGAGTCGcttgaacttttgatttttt
gaattttattttatttttttctcgaagGTTGGTCTACCTTCAGAAGGTCT
GTGTACCTTCTTGGATTTTtgagagaacctttttttgtatACTGAGTTTT
TTGCGCTTCGTGGACCCGTGTGTCTGCaagtgattttgattttttgaatt
tttgtcNAATCTTTTTTTGTATACTGAGTTTTTTGCGCTTCGTGGACCCG
TGTGTCTGCaagtgattttgattttttgaatttttgtctctATACGGCAG
CTTTCTGTCAAAATTTGGTCTTGGTGCTACACTTCCATTCATCTTTTTGG
TGACTTGTTCACAGGTTTAACCTTGTTCCTCAGTTTTTGATAAAGGTTAA
GCTCGATTCTTTTTGGTGACTTGTTCACAGGTTTAACCTTGTTCCTCAGT
TTTTGATAAAGGTTAAGTTTGATTCTTTTTGGTGACTTGTTCACAGGTTT
AACCTTGTTCCTCAGTTTTTGATAAAGGTTAAGTTCGATAATTTCATTTT
CGTGATTAGCTNNNNNNNNNNNNNNNNTTTGTGAGTTGTATGATAATTGT
AATTGTAATTGTACAATAAACCTTGTTAATCACTTAAGTGTTGAAAAAGG
TTATAGACTTATATTTAATTCTTTGAAATGTCGATGTATTCGGAACCTAT
TCCCTCCATTCGGAGGAGTAAAAGGCTTattgaaaaacagaaaaaaccaC
TTGCtgaattttttgcagaaaaactTACAACTCTGGAAACAGAACTGACT
ATGAAAATTGAGTATATAGATTCTCTCATGAAAGAGCCTTCAAATGCCGA
AATTGTCCGACAAGAATTGAAATTAGTCGATAACATTTTTCTTGATATCA
CTTATAACCATCAAAAATTTAGTGCTGCTGTTGAAGATCCTACGAAGTAC
GAAACTCACTGGCTCGAGGACATTGATAAAAgaatttttggttttaaaaC
TTTTGTTACGAGATGGGTTCGAAGCATTGAAATTCCTGCTGAAATTAACG
AAACTAAGTCTAGATCACGAAACTCTTCTTCTCGTTCTGGTTCAAGTTCT
AGTTCCAGTTCTAAGAAATCTCATCGATCAAATGCGTCTTCTAATGCCAA
TAAATTGATTGAANTGTTACGAGATGGGTTCGAAGCATTGAAATTCCTGC
TGAAATTAACCAAACTAAGTCTAGATCACGAAACTCTTCTTCTCGTTCTG
GTTCAAGTTCTAGTTCCAGTTCTAAGAAATCTCATCGATCAAATGCATCT
TCTAATGCCAATAAATTGATTGAAGCTGAAGTCACTCTAGCAGCTTTAGA
AGCTGAAtctgaatttgagaaaaatcagGTGGTTCGTGACGCTGACAAAG
AAAACGGTTTGGCAAAAGAAATTGCAAAGCAAAAGGCTAGAGTTCAAGTT
TATAAAAGCCATTTTGAAAGTGACAACAAATCTTTAAATCTTTCTAAAAG
GTCtttgaagattgaaaataaacTTTCACCTTTTTCTGCTCCCTTCGTTC
CTGACGGTCATGGAAAAGAAGAATTGCCAGTGTCTGATTATAAAGTTTCT
ACTCCTTTTGTCAAAGATGTTGTTTTGCCTGAGTCGAATTCTAAGCCAAA
TGTTGTGTTTCAACCTAAAGCCTCTAAAACTTCTTCATCAAAACCCATTG
TCATTTCTGAAGATTCTGCTGATAGATTGTGTGATTTGTTGGATTCGCAG
AGTGCTCCTGAAGTTTCGcttgatgtttttgatggtaATCCCTtggaatt
tcactttttcatgtcttgttttgaaagtgttGTTGAGACCAAGATTCGTG
ATCAAAAAGCGAAGCTGATTCTTTTGATCAAATATACATCAGGTGAAGCT
AAGGAATTGATAAAGGGATGTATTCACAAGGATGGAGGCGACTGTTACAA
TTATGCCAAGGAATTGTTGCTCTCTCGTTTTGGTGATCCTTATAAAATTC
TCATCTCTTATCGAAAAGAATTATCTTCTTCTAAGCAAATTAAGTATGGT
GATTCTTTTGAATTAAGAAAGCtttatacttttcttttgaaatgtAGTCA
ACTTGTTACTGGAAAATATCGTTATTCGT Coding sequence (CDS) from alignment at scaffold_451:1458950..1461328 >TCONS_00066322 ID=TCONS_00066322|Name=TCONS_00066322|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_451:1458950..1461328 (Clytia hemisphaerica)
ATGTCGATGTATTCGGAACCTATTCCCTCCATTCGGAGGAGTAAAAGGCT
TattgaaaaacagaaaaaaccaCTTGCtgaattttttgcagaaaaactTA
CAACTCTGGAAACAGAACTGACTATGAAAATTGAGTATATAGATTCTCTC
ATGAAAGAGCCTTCAAATGCCGAAATTGTCCGACAAGAATTGAAATTAGT
CGATAACATTTTTCTTGATATCACTTATAACCATCAAAAATTTAGTGCTG
CTGTTGAAGATCCTACGAAGTACGAAACTCACTGGCTCGAGGACATTGAT
AAAAgaatttttggttttaaaaCTTTTGTTACGAGATGGGTTCGAAGCAT
TGAAATTCCTGCTGAAATTAACGAAACTAAGTCTAGATCACGAAACTCTT
CTTCTCGTTCTGGTTCAAGTTCTAGTTCCAGTTCTAAGAAATCTCATCGA
TCAAATGCGTCTTCTAATGCCAATAAATTGATTGAANTGTTACGAGATGG
GTTCGAAGCATTGAAATTCCTGCTGAAATTAACCAAACTAAGTCTAGATC
ACGAAACTCTTCTTCTCGTTCTGGTTCAAGTTCTAGTTCCAGTTCTAAGA
AATCTCATCGATCAAATGCATCTTCTAATGCCAATAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066322-exon-scaffold_451-1491911889:1458950..1461328 | TCONS_00066322-exon-scaffold_451-1491911889:1458950..1461328 | Clytia hemisphaerica | exon |
| TCONS_00066322-exon-scaffold_451-1510915933:1458950..1461328 | TCONS_00066322-exon-scaffold_451-1510915933:1458950..1461328 | Clytia hemisphaerica | exon |
| TCONS_00066322-exon-scaffold_451-1575043694:1458950..1461328 | TCONS_00066322-exon-scaffold_451-1575043694:1458950..1461328 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1458950..1461328 . |
Blast
The following BLAST results are available for this feature:
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