|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066319 ID=TCONS_00066319|Name=TCONS_00066319|organism=Clytia hemisphaerica|type=transcript|length=966bp
CTATCTTTACCTACAGACCTTATGCGGCTGCGGTCATAACTAAAACTAAC
TCAAAAGAATACAAAGGACTGTAATATGCTATGCTATAATATATGCTAAT
ATATGCTAAATATACAATGACGTAATACGTATAATTATACTTTCTTTTCC
GACACTCCCGCCACGGACACGAACGCTAAAGTGTCTTTTTCATCAACAAA
TTTGATAGTGACCTTTTCGTCGGTCTCTTCATTCTTCCTGGAATACTCAA
ATGGATAAAGTTTATTTACTGGGCGTTTATAATTCATCAATTTGCCGTTT
GTAATAACGGATAGTTCACAGGCTCGAACTTTACCGTCCGTGCTTCTAAT
AAGTTTTGTGATCTTACCCAGTTTCCAATTCTGTCTTTTGACTTTGTCAT
CGTGGATTAGTACCACGTCATCAGTTCTTGGAACTACGTCAATATTGGAC
GTTTTAGCAATGTTTCTCGATCGTTCACGAAGTGATACGAGATATTCATT
TGACCATCGATCCCAAAATTGATCTAGAATCGTTTGTAAGTAGACGTAAC
GTGTGTCCAAATCGAcattttcgttttcttcttcgttCAAGTTTGGCGCG
ATATTCGTGTTCAGGTCACGCCCATAAATTAACTTATTGGGTGTCAAAGG
ATCAACATTTTCCTCAGTGTAAAGGTATGTCAATGGTCGattattcaaaa
tattctcGACCTCTTTCAAAATAGTTAACATTTCCTCATAGTTCAGCTTA
GCGTTTTCGATGGATTTTCGTAAACAGCGTTTGACGGATCGGACAAGACG
TTCAAAAAAGCCTCCATACCACGGAACTTTTGCAATGTTAAATTTCCACA
GTGTTCCTCtgtttgccatgaaattttgtaCGTCTGTTGAGATAAAATTA
GTCCCGTTATCAGATATCATGACTTTTGGCGTGCCATGAGTAGAAATCAA
TCTCTTTAACAGGTTA Run BLAST on NCBI protein sequence of TCONS_00066319-protein >TCONS_00066319-protein ID=TCONS_00066319-protein|Name=TCONS_00066319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
NLLKRLISTHGTPKVMISDNGTNFISTDVQNFMANRGTLWKFNIAKVPWY
GGFFERLVRSVKRCLRKSIENAKLNYEEMLTILKEVENILNNRPLTYLYT
EENVDPLTPNKLIYGRDLNTNIAPNLNEEENENVDLDTRYVYLQTILDQF
WDRWSNEYLVSLRERSRNIAKTSNIDVVPRTDDVVLIHDDKVKRQNWKLG
KITKLIRSTDGKVRACELSVITNGKLMNYKRPVNKLYPFEYSRKNEETDE
KVTIKFVDEKDTLAFVSVAGVSEKKV Run BLAST on NCBI transcript from alignment at scaffold_451:1450960..1451925 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066319 ID=TCONS_00066319|Name=TCONS_00066319|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at scaffold_451:1450960..1451925 (Clytia hemisphaerica)
TAACCTGTTAAAGAGATTGATTTCTACTCATGGCACGCCAAAAGTCATGA
TATCTGATAACGGGACTAATTTTATCTCAACAGACGtacaaaatttcatg
gcaaacaGAGGAACACTGTGGAAATTTAACATTGCAAAAGTTCCGTGGTA
TGGAGGCTTTTTTGAACGTCTTGTCCGATCCGTCAAACGCTGTTTACGAA
AATCCATCGAAAACGCTAAGCTGAACTATGAGGAAATGTTAACTATTTTG
AAAGAGGTCgagaatattttgaataatCGACCATTGACATACCTTTACAC
TGAGGAAAATGTTGATCCTTTGACACCCAATAAGTTAATTTATGGGCGTG
ACCTGAACACGAATATCGCGCCAAACTTGaacgaagaagaaaacgaaaat
gTCGATTTGGACACACGTTACGTCTACTTACAAACGATTCTAGATCAATT
TTGGGATCGATGGTCAAATGAATATCTCGTATCACTTCGTGAACGATCGA
GAAACATTGCTAAAACGTCCAATATTGACGTAGTTCCAAGAACTGATGAC
GTGGTACTAATCCACGATGACAAAGTCAAAAGACAGAATTGGAAACTGGG
TAAGATCACAAAACTTATTAGAAGCACGGACGGTAAAGTTCGAGCCTGTG
AACTATCCGTTATTACAAACGGCAAATTGATGAATTATAAACGCCCAGTA
AATAAACTTTATCCATTTGAGTATTCCAGGAAGAATGAAGAGACCGACGA
AAAGGTCACTATCAAATTTGTTGATGAAAAAGACACTTTAGCGTTCGTGT
CCGTGGCGGGAGTGTCGGAAAAGAAAGTATAATTATACGTATTACGTCAT
TGTATATTTAGCATATATTAGCATATATTATAGCATAGCATATTACAGTC
CTTTGTATTCTTTTGAGTTAGTTTTAGTTATGACCGCAGCCGCATAAGGT
CTGTAGGTAAAGATAG Coding sequence (CDS) from alignment at scaffold_451:1450960..1451925 >TCONS_00066319 ID=TCONS_00066319|Name=TCONS_00066319|organism=Clytia hemisphaerica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_451:1450960..1451925 (Clytia hemisphaerica)
AACCTGTTAAAGAGATTGATTTCTACTCATGGCACGCCAAAAGTCATGAT
ATCTGATAACGGGACTAATTTTATCTCAACAGACGtacaaaatttcatgg
caaacaGAGGAACACTGTGGAAATTTAACATTGCAAAAGTTCCGTGGTAT
GGAGGCTTTTTTGAACGTCTTGTCCGATCCGTCAAACGCTGTTTACGAAA
ATCCATCGAAAACGCTAAGCTGAACTATGAGGAAATGTTAACTATTTTGA
AAGAGGTCgagaatattttgaataatCGACCATTGACATACCTTTACACT
GAGGAAAATGTTGATCCTTTGACACCCAATAAGTTAATTTATGGGCGTGA
CCTGAACACGAATATCGCGCCAAACTTGaacgaagaagaaaacgaaaatg
TCGATTTGGACACACGTTACGTCTACTTACAAACGATTCTAGATCAATTT
TGGGATCGATGGTCAAATGAATATCTCGTATCACTTCGTGAACGATCGAG
AAACATTGCTAAAACGTCCAATATTGACGTAGTTCCAAGAACTGATGACG
TGGTACTAATCCACGATGACAAAGTCAAAAGACAGAATTGGAAACTGGGT
AAGATCACAAAACTTATTAGAAGCACGGACGGTAAAGTTCGAGCCTGTGA
ACTATCCGTTATTACAAACGGCAAATTGATGAATTATAAACGCCCAGTAA
ATAAACTTTATCCATTTGAGTATTCCAGGAAGAATGAAGAGACCGACGAA
AAGGTCACTATCAAATTTGTTGATGAAAAAGACACTTTAGCGTTCGTGTC
CGTGGCGGGAGTGTCGGAAAAGAAAGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066319-exon-scaffold_451-1491911889:1450960..1451925 | TCONS_00066319-exon-scaffold_451-1491911889:1450960..1451925 | Clytia hemisphaerica | exon |
| TCONS_00066319-exon-scaffold_451-1510915933:1450960..1451925 | TCONS_00066319-exon-scaffold_451-1510915933:1450960..1451925 | Clytia hemisphaerica | exon |
| TCONS_00066319-exon-scaffold_451-1575043694:1450960..1451925 | TCONS_00066319-exon-scaffold_451-1575043694:1450960..1451925 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1450960..1451925 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
