TCONS_00066309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066309
Unique NameTCONS_00066309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066309 ID=TCONS_00066309|Name=TCONS_00066309|organism=Clytia hemisphaerica|type=transcript|length=257bp
GGTCACGATTGACTCTGTTGCAAAGGGAAAGAAGATcatcattaaaatgt
aaaatatgggTATCATCGGCgaaatgaaaagtttcacttGAAAAGATTGC
ATTGTGAAGATCATTAATATAGATTAAAAATAAGAGAGGTCCTAGAACAG
AGCCTTGTGGAACACCATGAGATATTTTGGGGAAATGATATAAGGGCCAG
ATGATTTGTTAAAGGATAAAGAATTAATTGTTAGTAAAACTTCAGCAGGG
TTAACAC
Run BLAST on NCBI

transcript from alignment at scaffold_451:1403569..1403825

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066309 ID=TCONS_00066309|Name=TCONS_00066309|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at scaffold_451:1403569..1403825 (Clytia hemisphaerica)
GTGTTAACCCTGCTGAAGTTTTACTAACAATTAATTCTTTATCCTTTAAC
AAATCATCTGGCCCTTATATCATTTCCCCAAAATATCTCATGGTGTTCCA
CAAGGCTCTGTTCTAGGACCTCTCTTATTTTTAATCTATATTAATGATCT
TCACAATGCAATCTTTTCaagtgaaacttttcatttcGCCGATGATAccc
atattttacattttaatgatgATCTTCTTTCCCTTTGCAACAGAGTCAAT
CGTGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041509XLOC_041509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066309-exon-scaffold_451-1491911889:1403569..1403825TCONS_00066309-exon-scaffold_451-1491911889:1403569..1403825Clytia hemisphaericaexon
TCONS_00066309-exon-scaffold_451-1510915933:1403569..1403825TCONS_00066309-exon-scaffold_451-1510915933:1403569..1403825Clytia hemisphaericaexon
TCONS_00066309-exon-scaffold_451-1575043694:1403569..1403825TCONS_00066309-exon-scaffold_451-1575043694:1403569..1403825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1403569..1403825 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.11269	2.31722	6.46159	6.45882	4.07276	3.19334	0	2.61213	0.623014	5.05731	4.48418	2.99172	0.54269	2.2251	0.22886	2.39397	0	0.83724	3.49776	1.95144	2.55809	2.8312	1.10254	1.19164	0	7.34692	1.04473	3.81923	2.73486	3.22414
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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