TCONS_00066267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066267
Unique NameTCONS_00066267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066267 ID=TCONS_00066267|Name=TCONS_00066267|organism=Clytia hemisphaerica|type=transcript|length=362bp
CTTATATTAGTGGATCTCCACTCCTTCAAGTGTTCCTTCCAGTTCATAGA
CAACCAGGGTCCACTTAGATTTTTTGATAGTCTGGATGGCACGATTACTT
CACTTGACTCATTGTCATAAAACattatcagaaagcaaagttcattCAGA
ACAATCGACTTTGCATAATCTATCTGGTACCAAATGTCTTTCAACGTTCA
ACTAcgcgttttttttataacattatactttataagaatttttatgatga
aattgaccaaaaaattaagaaaatggtaagaacaccaccatcatggaatt
tggcaactgaacctaagaatagCGTTCTTAGAGTATTTTACCCTTAAATT
ATTTTCCAGCAA
Run BLAST on NCBI

transcript from alignment at scaffold_451:182383..182744

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066267 ID=TCONS_00066267|Name=TCONS_00066267|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at scaffold_451:182383..182744 (Clytia hemisphaerica)
TTGCTGGAAAATAATTTAAGGGTAAAATACTCTAAGAACGctattcttag
gttcagttgccaaattccatgatggtggtgttcttaccattttcttaatt
ttttggtcaatttcatcataaaaattcttataaagtataatgttataaaa
aaaacgcgTAGTTGAACGTTGAAAGACATTTGGTACCAGATAGATTATGC
AAAGTCGATTGTTCTGaatgaactttgctttctgataatGTTTTATGACA
ATGAGTCAAGTGAAGTAATCGTGCCATCCAGACTATCAAAAAATCTAAGT
GGACCCTGGTTGTCTATGAACTGGAAGGAACACTTGAAGGAGTGGAGATC
CACTAATATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041469XLOC_041469Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066267-exon-scaffold_451-1491911889:182383..182744TCONS_00066267-exon-scaffold_451-1491911889:182383..182744Clytia hemisphaericaexon
TCONS_00066267-exon-scaffold_451-1510915933:182383..182744TCONS_00066267-exon-scaffold_451-1510915933:182383..182744Clytia hemisphaericaexon
TCONS_00066267-exon-scaffold_451-1575043694:182383..182744TCONS_00066267-exon-scaffold_451-1575043694:182383..182744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:182383..182744 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.231881	0.22612	0	0.256861	0	0	0.298119	0	0.977007	1.45222	0.234926	0.617725	0	0	0.131669	0	0	0.356836	0	0.257938	0.672586	0.328064	0	0.241714	0	0.222191	0	0.339329	0.772108	1.04887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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