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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066259 ID=TCONS_00066259|Name=TCONS_00066259|organism=Clytia hemisphaerica|type=transcript|length=2222bp
TCACGATGGAAGAAAattgttgatattttcaaatatCAATGTAATAGTGA
TATGAGACGTTTTGAAGAAATTTACGCGGACGGTCACGGTTGTTTGCTTC
CCGTCGCCGCAATTACGAACCGTTTTGAAACGCTTTACGGAGATGAGTTG
AACATTACGAGTAAATTGATGACGGTCCCTACACCGACTGAAACGTCAAT
CATCTCCAATATGTCGGCTGCCGTAACAATTTCGGGTTATCAGCATCCCG
GTATATCACGTAAACGGAACTTGACGGACGATTCTGCGTCAGATGATGGT
AATACGGAAGAACAATATCCCTCACAACATCGACCGTATTATGAAAGTGG
CTCCAAGACGCCACCTCCGCCGCTTTTGGTGCCAGTAGGAAGTCCTCCAT
TGAAACAAGTCAAAATAGAAGACGACGTTCACACTAAAGAAGACAGAGGT
GTTGTCCAATCTAATGGTCATAACAATGCAACAACGCCCTCACACGCGCA
ATCAACAAACTCTTCCACGTTGAATCGTACCTTGATGGGACCGCCCTCGT
TAGGGGCGGAAAAACAAGTAACGCCACACAATAACTCGACAATCGCTGGC
ATCTTTGGGAATTCACAATCCCCTGAAAGCAGTATAGCtgaaagtgatga
cgtcacagaaGACTCTAACTCCGCAACAGTACCTCAACTTCGCCGAATGT
CTTCCATCATATACATCTTACCTGACACTATGACCATACGTGAAGCAATC
ACTTTCTGGGAGAAAGGCTCTAACGAATTCCCGCCCGTCCGCACTTGGAC
CAGACCTCAAAATTCTATTCAAACAGATTTAGTGATAAAGCTTGAACGGT
TATACTCTATCTACACGGAACGTTTCCATAGTGACATAGACGCGTTATTA
GTGAGTGCCTTGGATGAGGATAAACGAGAACTACCTATTGATAAGCTCAT
TTCGAAACATCAAGACGTGAAATTCAGTCAAACGCCTACAAATACCTCAT
CCATGACTTTCGATTTTTCACATCACAAAACAATATCGCAAAGTAGCGAA
TCCTTGTATTTATTACCGCGTAAAATAAACGGTCGTAAAGTAAGCGCGAA
AGATGTTTTACAATTATGGTATCACGGATTAAATAAAATCCCACCTGTTA
AATTATGGTCACCCCAACAAAAAGCTGTTCAACAGAGTAAAATTTCACGG
TGGAAAAAAATTGTGGAACTTTTTGAGCAGGAGTTTAACGGTGACTGgga
gatattttacaaacatttttCGAACAGTCTTGGTCAACTGTTACCAATCA
CAGCCATTATTGCAAAACATGAAGAAGAGACGCGATCGATGACTGAAAGT
GCTATTTTACAACAGTTgaaataaaactgaaaatatttctttgtcGGATG
ATGTTCAGATTTTAATACTCTAGGATCTTTTCTTCTGAGAGGGTTATTCT
AAAAAGGTTTCTTACACCCAAAaatggacttttccagaaatagtctgtgc
attcccctgttgaggatatcggatatccagggggttaacgatttttgttc
aaaagtggatattcagggggttaaatatctacaagggagcgggtaagcat
ctttataagagaggatatccagggggttgagcatatttttaagggTGGta
tctttactaataaagttagggggttcgatacttcaaaaaaccaatgtcct
caacagtgggggttacttttctttctggaaaaaccCAATGTCGTTTGCAA
ATATAGATTTCAATCTTTTCGCCTAAACGAAACTTGAAAAGATCTAGATT
TTATTGCTAAAACAAAACCAGCAAATTTTGAAACAGTACTGTGGCGGGTT
AAGCGAACATGTGGCAAACTTAGGAGAGAATTTTCTAAGGTTAGTATTTT
CTTGCCCCACTTATTGTAAGGAAACGTGGATattcatcttcattttgact
gAAAACTGCTAACTTTTGGgtgtaagaaagaaaaaaggcgCCAAAATTAG
CAATCAGAGTTCCCTTTTGACCCGTCTTTCGGCACCTACTTAAAAGTCAG
CCACTGGGGGGCAGTTACTTATTTTGAAAGTATTATAATTAAAAGGAGAG
GCTCTTTCTTCTACGAACTTTTTGATGGCTTTTTAGGGCGTTAGTATTgt
attttcttattcaaattatttattatttctaGTATTGTTATTTCATatga
aaaataccaaatttgatgaaaa Run BLAST on NCBI transcript from alignment at scaffold_451:1174568..1179947- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066259 ID=TCONS_00066259|Name=TCONS_00066259|organism=Clytia hemisphaerica|type=transcript|length=5380bp|location=Sequence derived from alignment at scaffold_451:1174568..1179947- (Clytia hemisphaerica)
TCACGATGGAAGAAAATTGTTGATATTTTCAAATATCAATGTAATAGTGA
TATGAGACGTTTTGAAGAAATTTACGCGGACGGTCACGGTTGTTTGCTTC
CCGTCGCCGCAATTACGAACCGTTTTGAAACGCTTTACGGAGATGAGTTG
AACATTACGAGTAAATTGATGACGGTCCCTACACCGACTGAAACGTCAAT
CATCTCCAATATGTCGGCTGCCGTAACAATTTCGGGTTATCAGCATCCCG
GTATATCACGTAAACGGAACTTGACGGACGATTCTGCGTCAGATGATGGT
AATACGGAAGAACAATATCCCTCACAACATCGACCGTATTATGAAAGTGG
CTCCAAGACGCCACCTCCGCCGCTTTTGGTGCCAGTAGGAAGTCCTCCAT
TGAAACAAGTCAAAATAGAAGGTAAGCAATTTCTTTTTCTTCGTTTAAGA
ATAATCATCAATTTTGGCCCTTGACTGTTCTCTTTAAGTGTCATACCAGG
TTAATTATAGTAATGATATGAAATTCGCTTGAGGGTGGTTTCCTCGTAGC
AAGCGAACGGACTTAAGTTTCAGAAAACTCAAAAAAGAAGCTGTGAAGTA
TTCGCCTAATTGCAAAGAAGAAAAATTGAGAACGCAAGCTCCGAAACTTT
TAGTTATTTCTCAAAACTACCGTTGTAAGGATTACAAAATAACTATGGTT
TTAAAGCAACCATTGATGGTCTCAAAAAAGGGTGGTGGATTTGCAATAAG
AATAGGAACCCCCAGGGGAAAGTTTTTTTGTGAGTTAATGTTGGCGCCAT
TAACTTTCCCAGCTGGAACACAACGTTGTTTCAACGTTCATCTAACGTTA
TATGGACGTTGTGAACGTTAGATGAACGTTGAAACAACGTTGTGTGCCAG
CTGGGTTGTTTAACGAAATTTTATGACGGAGATTTTTTTATACAAAAGAA
ATCATAAGGACCACACTCCTTTTACTTCCTGCCCTCAAAATATCGCGCTA
CACTCTAATTAGAAGATATCTAAATGAAGAAGTTTCATAAAATCTTAATC
TTAGATAAGAAGGGCTTATCATTGAGATCTGGAGATTAAAAAGCAACGAA
CAGTGTAAGAAGGTCCCATGCGCAATTTTCTATTTCGCAATCTTTTTCTT
TGCCCACGTTGTATCGCCTTTGTGGTCTAGATGAAATATAGCCTGGATAT
CCGGGCTGTAAACTTTTTTCATATTTTTTTCGATGTTTCTGGTTTACTAC
CTAGTTTCCCGGCAATTTGCATTTCATTACCGAGTTTATGTATGTGTGTT
TTTCAGCGACGGAGACGATAAGGTTCTAATTTGACTAGATCATGACCAAC
TGAGGACGACGGTAAATCAGCACTTTAACCGTCCTCGATTTTGCGGGTCA
GAACTACGGGCTATTCCAAATCGCTTCAGTCAGTTTACCATCCTCAAAAG
CGCAATTACATAAACTCGCTACTATCAGAAGGCAGCGCATATGTACTCTG
TCCATACACAAATTTCCTATTAGCAGATTCATATAAGAAACTGACGAAAG
ACATGCAAAGACTACCTCATGCTCTGGACATTTTGAAAAAAAGATATGAT
TATGTGTTTCGATCTTTTTCGTGACTTTTGACATAAATTTGCTAATAGGG
AATACGTGTATTGAAATATTGCGCTAAGCTAAGAATTGCATCGACCCTGG
GTTTACAAGCATCTAAGGTAGGTACACCAAGCTGTAAGCAGAAACATCAA
AATAGAAAAATAGTTTACAACTTGGATCTCCAGGCTAGATGGAATACCCA
GTCACTGCCCTTACAGTTTAATACTGAGGTTAACTATACCAGGATAAACA
CGACGACGGACGAAAAATGTAATAGGCTAGTGAAAATACGAAACTTGATT
CGTTGAAACTCTCTAGCCTGTTAAATTTTCGTTCGTCGTCGTGATTTTAC
CGATTTACTTAACTTCACTAATATTGGGTAGTCATTTTGAAAGTTTCAAT
TTCCATAGACGACGTTCACACTAAAGAAGACAGAGGTGTTGTCCAATCTA
ATGGTCATAACAATGCAACAACGCCCTCACACGCGCAATCAACAAACTCT
TCCACGTTGAATCGTACCTTGATGGGACCGCCCTCGTTAGGGGCGGAAAA
ACAAGTAACGCCACACAATAACTCGACAATCGCTGGCATCTTTGGGAATT
CACAATCCCCTGAAAGCAGTATAGGTATGCCACACCCCTTTCAATACACC
TTTCCCAAGTTTATCGATTTTTTCGACCTCTCCAATTTGAAACGAGAACT
TGATACTTTTGAAGCGTTTGGTGATACAAAGTCATTCTGAAAATTTGAGA
TCAAAAGCTTTTTCTGTTCCTTTTTATGGCTGTTTTTATGGTCAAACCTC
TCTTGAAAGAAAGATATTTTATCCTACCGGGCCTCGTTTCTTTACTTTAA
AATTGAAATATCTCAAGAACCGGAAGAGCTTTAAACACAATTCTTTTTTT
GTTGATTTTGTATTTCGTAGTAGAATCTTTTTAAATTAAATGCAAGTAGA
GCAGGGTTTTGGAATAGCGTTTTTCAAAAAAGTCGAAATATAAGCTCGGG
AAAGGTGTATTTTGTTCCTCTTATATCAAAAGGTTTGAGATTTTAAAGTG
CGTACGTTTAATGAAAATCCGGTTTAAGAGTCATCCCAGCATACTAGACG
ACTAGATTTAAAAAAAATGTAGTGTATGTTGAGGAAAACATAAGAGATGT
TATTATACAAACTTTTATGATGTTATCGTATAACACCCATATCACCTGTA
TTACTGTAACAACTTCAGAATATAAGGTCAGGTTTTGTTGCCATTATTAT
CGCAATTCGTTATTGCAGAAGATGCTCTCTCTCACATTCACTAGCAGTTT
AAAACTATGAAAAAGCAGTTTAGATTTCCATTAGCCTATTTCATAGGATT
CGCTTATCTGTTATATGCTATTTTCTACTCAATTGAGGGGGGAAATGCAT
AAATTTGTGCAGATTACCTTAAGGGAACTATTTTTTTGCGGGAACTAATT
TTTGCGGTTCGCAGTTCAAGATTTAATATAAAAATTTGCGGGAACTTAAT
TTTGTGGATTTCTCACTTGAATGAAAATTAGAGCCGTACTGTGAATTATT
CGACCTTTGTTTTTTTTGCATTTGAAAAATTTTGCGGGAACTTAATTTTG
CGGTTTGGGCCTAAATCCGCAAAAACTGCAAAATTTAGTTCCCGCAAAAA
TTAGTTCCCTTAAGGTATTTCCCTTCGAGAATAACGCTGACAAGATATCC
CAGCTGGCACACAACGTTGTTTCAACGTTCATCTAACGTTATATGGACGT
TGTGAACGTTAGATGAACGTTGAAACAACGTTGTGTGCCAGCTGGGTATG
TTTGTATTAATACCAAGTACTAAACACGAATCCTTGAAATAGGCTGATTG
AAAAACACAAACACACAAACTTGGTAATAATTTCGACCAAGAAGTAGTTG
AAAAACTAATGCGTTAAGGCCGGTCTCCACTTGCGCGCGCTTTGATCGTA
ATCTTTTTTCCAAGCAAAAAGGATTGAAGCCCAAAAGTGCGATCGTAGCG
CGCGCAAGTGGAAACCGGCCTTTACTTCTTAATAGTTGATAGATGATTCC
ATCAAAGAGTGCTCGATGATCGGGACCAGAGCTTCATACCGTGTACAAGA
AAGAAACAAAGTTGAATTACGATAGTACTTTAAGTTTCATCTTTATTGAA
TCGTCAGCTTTTCTTCTAATTCATTTTTTCCGTATTCCTTTTCAGCTGAA
AGTGATGACGTCACAGAAGACTCTAACTCCGCAACAGTACCTCAACTTCG
CCGAATGTCTTCCATCATATACATCTTACCTGACACTATGACCATACGTG
AAGCAATCACTTTCTGGGAGAAAGGCTCTAACGAATTCCCGCCCGTCCGC
ACTTGGACCAGACCTCAAAATTCTATTCAAACAGATTTAGTGATAAAGCT
TGAACGGTTATACTCTATCTACACGGAACGTTTCCATAGTGACATAGACG
CGTTATTAGTGAGTGCCTTGGATGAGGATAAACGAGAACTACCTATTGAT
AAGCTCATTTCGAAACATCAAGACGTGAAATTCAGTCAAACGCCTACAAA
TACCTCATCCATGACTTTCGATTTTTCACATCACAAAACAATATCGCAAA
GTAGCGAATCCTTGTATTTATTACCGCGTAAAATAAACGGTCGTAAAGTA
AGCGCGAAAGATGTTTTACAATTATGGTATCACGGATTAAATAAAATCCC
ACCTGTTAAATTATGGTCACCCCAACAAAAAGCTGTTCAACAGAGTAAAA
TTTCACGGTGGAAAAAAATTGTGGAACTTTTTGAGCAGGAGTTTAACGGT
GACTGGGAGATATTTTACAAACATTTTTCGAACAGTCTTGGTCAACTGTT
ACCAATCACAGCCATTATTGCAAAACATGAAGAAGAGACGCGATCGATGA
CTGAAAGTGCTATTTTACAACAGTTGAAATAAAACTGAAAATATTTCTTT
GTCGGATGATGTTCAGATTTTAATACTCTAGGATCTTTTCTTCTGAGAGG
GTTATTCTAAAAAGGTTTCTTACACCCAAAAATGGACTTTTCCAGAAATA
GTCTGTGCATTCCCCTGTTGAGGATATCGGATATCCAGGGGGTTAACGAT
TTTTGTTCAAAAGTGGATATTCAGGGGGTTAAATATCTACAAGGGAGCGG
GTAAGCATCTTTATAAGAGAGGATATCCAGGGGGTTGAGCATATTTTTAA
GGGTGGTATCTTTACTAATAAAGTTAGGGGGTTCGATACTTCAAAAAACC
AATGTCCTCAACAGTGGGGGTTACTTTTCTTTCTGGAAAAACCCAATGTC
GTTTGCAAATATAGATTTCAATCTTTTCGCCTAAACGAAACTTGAAAAGA
TCTAGATTTTATTGCTAAAACAAAACCAGCAAATTTTGAAACAGTACTGT
GGCGGGTTAAGCGAACATGTGGCAAACTTAGGAGAGAATTTTCTAAGGTT
AGTATTTTCTTGCCCCACTTATTGTAAGGAAACGTGGATATTCATCTTCA
TTTTGACTGAAAACTGCTAACTTTTGGGTGTAAGAAAGAAAAAAGGCGCC
AAAATTAGCAATCAGAGTTCCCTTTTGACCCGTCTTTCGGCACCTACTTA
AAAGTCAGCCACTGGGGGGCAGTTACTTATTTTGAAAGTATTATAATTAA
AAGGAGAGGCTCTTTCTTCTACGAACTTTTTGATGGCTTTTTAGGGCGTT
AGTATTGTATTTTCTTATTCAAATTATTTATTATTTCTAGTATTGTTATT
TCATATGAAAAATACCAAATTTGATGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066259-exon-scaffold_451-1575043694:1179527..1179947 | TCONS_00066259-exon-scaffold_451-1575043694:1179527..1179947 | Clytia hemisphaerica | exon |
| TCONS_00066259-exon-scaffold_451-1575043694:1177724..1177939 | TCONS_00066259-exon-scaffold_451-1575043694:1177724..1177939 | Clytia hemisphaerica | exon |
| TCONS_00066259-exon-scaffold_451-1575043694:1174568..1176152 | TCONS_00066259-exon-scaffold_451-1575043694:1174568..1176152 | Clytia hemisphaerica | exon |
| TCONS_00066259-exon-scaffold_451-1510915933:1179527..1179947 | TCONS_00066259-exon-scaffold_451-1510915933:1179527..1179947 | Clytia hemisphaerica | exon |
| TCONS_00066259-exon-scaffold_451-1510915933:1177724..1177939 | TCONS_00066259-exon-scaffold_451-1510915933:1177724..1177939 | Clytia hemisphaerica | exon |
| TCONS_00066259-exon-scaffold_451-1510915933:1174568..1176152 | TCONS_00066259-exon-scaffold_451-1510915933:1174568..1176152 | Clytia hemisphaerica | exon |
| TCONS_00066259-exon-scaffold_451-1491911889:1179527..1179947 | TCONS_00066259-exon-scaffold_451-1491911889:1179527..1179947 | Clytia hemisphaerica | exon |
| TCONS_00066259-exon-scaffold_451-1491911889:1177724..1177939 | TCONS_00066259-exon-scaffold_451-1491911889:1177724..1177939 | Clytia hemisphaerica | exon |
| TCONS_00066259-exon-scaffold_451-1491911889:1174568..1176152 | TCONS_00066259-exon-scaffold_451-1491911889:1174568..1176152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1174568..1179947 - |
Blast
The following BLAST results are available for this feature:
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