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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066252 ID=TCONS_00066252|Name=TCONS_00066252|organism=Clytia hemisphaerica|type=transcript|length=1089bp
agaaaagtttcaaaaaaatggcgGCATCCAAAAGTCAAATGGAAATCAAA
GatgatttagattttaaataCAAAATGAAGAGACCAGACCGTCTTACAAT
GATAATGATTTGGAATtgctcaaaaaatattattacaaaGAACTCAACAG
GAATCCTGAGTGGAAAGACTACTGGGTTGAAGAAGATACAATTATTCGGT
TTTTGAAAGCTCACGTTACGGTTCAAGAGAGTTTAGAAGCATTGATTGTA
TATTGTGATTGGAGAACCAAGTATGAGGTAGACGATATATCACCAGATGA
TCCAGATATCCGCAAAGAAGGATCTGCACACAGGGAACTTATCTTGGAGG
ACCAAACAGACTTTGGTGGACGACCTGTTGTTATTATGTATCCGCATCTG
CATGATATGTATCATGGCGATTACCCAAGTTTATATAAATATATCACTTT
TCAGATGGAACAGTTGATCTCAATATGTGACCAAGCTGAAAATGATGGCA
CTTTTTGTTTAGTAGTTGATATGAAAAATTTTGCAATGAAAAATATGGAT
TATACAGCTTTACGtaaaattttctggattttgaaaaattgttatCCAGA
ACGACTAGGTGTGGCTTTGATTATTAATTACCCTTGGGTGTTTTATGGTT
GTTGGGAAATTATCAAACTATGGTTGAATGATGTTACTAGGagtaaaatt
catttttgttatcaaaaagAAATGAATGATTTTCTTGATACTAATGCATG
TGAAATTGAAGTTTTGAAATAATATATTTCTTTGGTATATCTTATCTGGA
ATTTTATTTGTTAGGGAAAAAATAAACGTAGTCAAAGTTTGTCATATCTA
GCCAGGGAACTACTTACAGCTTTTTGATAGAGTGGATGACACTGGATGct
aatcaaaaatagtgtgacattgtaaaaaatgctcaaaatcaactttttgg
aaTAACTCTtcttatcggcgatccaaaaaatatctgcaatttgattggtt
aaaaagagtacaatatatcttgtattttacatgtaaaaatataaattgac
gaaaagatgttgttgcattgtagcggtagcagcaatcta Run BLAST on NCBI protein sequence of TCONS_00066252-protein >TCONS_00066252-protein ID=TCONS_00066252-protein|Name=TCONS_00066252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MYPHLHDMYHGDYPSLYKYITFQMEQLISICDQAENDGTFCLVVDMKNFA
MKNMDYTALRKIFWILKNCYPERLGVALIINYPWVFYGCWEIIKLWLNDV
TRSKIHFCYQKEMNDFLDTNACEIEVLK Run BLAST on NCBI transcript from alignment at scaffold_451:1018716..1020233- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066252 ID=TCONS_00066252|Name=TCONS_00066252|organism=Clytia hemisphaerica|type=transcript|length=1518bp|location=Sequence derived from alignment at scaffold_451:1018716..1020233- (Clytia hemisphaerica)
AGAAAAGTTTCAAAAAAATGGCGGCATCCAAAAGTCAAATGGAAATCAAA
GATGATTTAGATTTTAAATACAAAATGAAGAGACCGTCTTACAATGATAA
TGATTTGGAATTGCTCAAAAAATATTATTACAAAGAACTCAACAGGAATC
CGGAGTGGAAAGACTACTGGGTTGAAGAAGATACAATTATTCGGTTTTTG
AAAGCTCACGTTACGGTTCAAGAGAGTTTAGAAGCATTGATTGTATATTG
TGATTGGAGAACCAAGTATGAGGTNAATTACAGTTCACATCAAACATCCT
CCTCCTAAACTAAAATGCTTGGTGGGGTGATTCATGTTGGCTATTTCCTT
CTTTAGTATGATTTAGGGCTTGTCTGAATCATGGTAAAAGGGTCTAAATT
TTGGATGTGAAAATTACTTCTTTCGGTTACATTCAGAAAAGTTTCAAAAA
AATGGCGGCATCCAAAAGTCAAATGGAAATCAAAGATGATTTAGATTTTA
AATACAAAATGAAGAGACCGTCTTACAATGATAATGATTTGGAATTGCTC
AAAAAATATTATTACAAAGAACTCAACAGGAATCCTGAGTGGAAAGACTA
CTGGGTTGAAGAAGATACAATTATTCGGTTTTTGAAAGCTCACGTTACGG
TTCAAGAGAGTTTAGAAGCATTGATTGTATATTGTGATTGGAGAACCAAG
TATGAGGTAGACGATATATCACCAGATGATCCAGATATCCGCAAAGAAGG
ATCTGCACACAGGGAACTTATCTTGGAGGACCAAACAGACTTTGGTGGAC
GACCTGTTGTTATTATGTATCCGCATCTGCATGATATGTATCATGGCGAT
TACCCAAGTTTATATAAATATATCACTTTTCAGATGGAACAGTTGATCTC
AATATGTGACCAAGCTGAAAATGATGGCACTTTTTGTTTAGTAGTTGATA
TGAAAAATTTTGCAATGAAAAATATGGATTATACAGCTTTACGTAAAATT
TTCTGGATTTTGAAAAATTGTTATCCAGAACGACTAGGTGTGGCTTTGAT
TATTAATTACCCTTGGGTGTTTTATGGTTGTTGGGAAATTATCAAACTAT
GGTTGAATGATGTTACTAGGAGTAAAATTCATTTTTGTTATCAAAAAGAA
ATGAATGATTTTCTTGATACTAATGCATGTGAAATTGAAGTTTTGAAATA
ATATATTTCTTTGGTATATCTTATCTGGAATTTTATTTGTTAGGGAAAAA
ATAAACGTAGTCAAAGTTTGTCATATCTAGCCAGGGAACTACTTACAGCT
TTTTGATAGAGTGGATGACACTGGATGCTAATCAAAAATAGTGTGACATT
GTAAAAAATGCTCAAAATCAACTTTTTGGAATAACTCTTCTTATCGGCGA
TCCAAAAAATATCTGCAATTTGATTGGTTAAAAAGAGTACAATATATCTT
GTATTTTACATGTAAAAATATAAATTGACGAAAAGATGTTGTTGCATTGT
AGCGGTAGCAGCAATCTA Coding sequence (CDS) from alignment at scaffold_451:1018716..1020233- >TCONS_00066252 ID=TCONS_00066252|Name=TCONS_00066252|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_451:1018716..1020233- (Clytia hemisphaerica)
ATGTATCCGCATCTGCATGATATGTATCATGGCGATTACCCAAGTTTATA
TAAATATATCACTTTTCAGATGGAACAGTTGATCTCAATATGTGACCAAG
CTGAAAATGATGGCACTTTTTGTTTAGTAGTTGATATGAAAAATTTTGCA
ATGAAAAATATGGATTATACAGCTTTACGTAAAATTTTCTGGATTTTGAA
AAATTGTTATCCAGAACGACTAGGTGTGGCTTTGATTATTAATTACCCTT
GGGTGTTTTATGGTTGTTGGGAAATTATCAAACTATGGTTGAATGATGTT
ACTAGGAGTAAAATTCATTTTTGTTATCAAAAAGAAATGAATGATTTTCT
TGATACTAATGCATGTGAAATTGAAGTTTTGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066252-exon-scaffold_451-1575043694:1020149..1020233 | TCONS_00066252-exon-scaffold_451-1575043694:1020149..1020233 | Clytia hemisphaerica | exon |
| TCONS_00066252-exon-scaffold_451-1575043694:1018716..1019719 | TCONS_00066252-exon-scaffold_451-1575043694:1018716..1019719 | Clytia hemisphaerica | exon |
| TCONS_00066252-exon-scaffold_451-1510915933:1020149..1020233 | TCONS_00066252-exon-scaffold_451-1510915933:1020149..1020233 | Clytia hemisphaerica | exon |
| TCONS_00066252-exon-scaffold_451-1510915933:1018716..1019719 | TCONS_00066252-exon-scaffold_451-1510915933:1018716..1019719 | Clytia hemisphaerica | exon |
| TCONS_00066252-exon-scaffold_451-1491911889:1020149..1020233 | TCONS_00066252-exon-scaffold_451-1491911889:1020149..1020233 | Clytia hemisphaerica | exon |
| TCONS_00066252-exon-scaffold_451-1491911889:1018716..1019719 | TCONS_00066252-exon-scaffold_451-1491911889:1018716..1019719 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1018716..1020233 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001251 | CRAL-TRIO_dom |
Blast
The following BLAST results are available for this feature:
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