Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066236 ID=TCONS_00066236|Name=TCONS_00066236|organism=Clytia hemisphaerica|type=transcript|length=3804bpRun BLAST on NCBI transcript from alignment at scaffold_451:742305..761734- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066236 ID=TCONS_00066236|Name=TCONS_00066236|organism=Clytia hemisphaerica|type=transcript|length=19430bp|location=Sequence derived from alignment at scaffold_451:742305..761734- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00066236 vs. Swiss-Prot (Human)
Match: KAP2 (cAMP-dependent protein kinase type II-alpha regulatory subunit OS=Homo sapiens GN=PRKAR2A PE=1 SV=2) HSP 1 Score: 366.311 bits (939), Expect = 3.488e-114 Identity = 179/308 (58.12%), Postives = 222/308 (72.08%), Query Frame = 2 Query: 191 NRYARRQSVCAEAYNPDESDDEDEKLVVHPKSDVQRKRLNEAVGNILLFKNLDNEQLNNVLDAMFERKTTADEHIIDQGDDGDNFYVIDRGIFDIYVKIDGSDKKVGAYNNKGSFGELALMYNTPRAATIVSNDEGIIWALDRVTFRRIVLKAAYLRRKMHEALLEKVPMLKHLNEFERMNVADALESRQYNDDVTIIRQGEEGSSMFFIEKGEVSVKI-------QDDSGREVEVTTLREGQYFGELALVTHKPRAASVYSKGDCKVAALDILAFERLLGSCMEVMKRSIGDYEEQLKKLGLSNRDL 1093 +R+ RR SVCAE YNPDE +++ + V+HPK+D QR RL EA +ILLFKNLD EQL+ VLDAMFER ADEH+IDQGDDGDNFYVI+RG +DI V D + VG Y+N+GSFGELALMYNTPRAATIV+ EG +W LDRVTFRRI++K +RKM E+ +E VP+LK L ERM + D + + Y D II QGE+ S + IE GEVS+ I +D +EVE+ +GQYFGELALVT+KPRAAS Y+ GD K +D+ AFERLLG CM++MKR+I YEEQL K+ S+ DL Sbjct: 92 SRFNRRVSVCAETYNPDEEEEDTDPRVIHPKTDEQRCRLQEACKDILLFKNLDQEQLSQVLDAMFERIVKADEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNTPRAATIVATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESVPLLKSLEVSERMKIVDVIGEKIYKDGERIITQGEKADSFYIIESGEVSILIRSRTKSNKDGGNQEVEIARCHKGQYFGELALVTNKPRAASAYAVGDVKCLVMDVQAFERLLGPCMDIMKRNISHYEEQLVKMFGSSVDL 399 The following BLAST results are available for this feature:
BLAST of TCONS_00066236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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