TCONS_00066235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066235
Unique NameTCONS_00066235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066235 ID=TCONS_00066235|Name=TCONS_00066235|organism=Clytia hemisphaerica|type=transcript|length=2862bp
TNCCGTTTACTCTAAAGGAGACTGCAAAGTAGCAGcattAGACATTTTGG
CATTCGAACGATTGTTGGGATCTTGTATGGAAGTCATGAAGCGAAGCATA
GGAGATTACGAAGAACAACTCAAAAAACTGGGTTTGAGTAATCGAGACCT
AAGaggaaagtaaacaaaaaaaatgatcGAGAACTTTATATAGAGTTATT
GTTCGATTATAGGGCGAGAAGATTGCAAAGATAAATTTAGTATTTGATGC
ATGATGGGTTTTGCAAATCCTTTagcttttttacaatttttaaggACTGG
GCCCCAGTATTGTGTCAGGCTTTCCTAGAGGCTGTTATGACCGTCTATAG
TAGAAGATTCGCCTGTTTCagaatgaagaaattttatgaaGTAGGTATTA
TAAGCTTGCCAGCCTGCTTGTCTAGAAATGAGGCAAGCTGATAAGGGTGG
GAAGGGCAACTTTTAAACATCagaagttttgaaattattagttTTAGTCA
TAATTTATTTTTAGCTATAACTATATTATTTTTCGTTTTAAAAACGTTAT
TCAAAGTCATATCATTTTCAAAGGCTAAGAGATTTGAACATGATACGACt
ttgaatatgttttttttgttattttaaaattgatattGTTCTCTTTGTTA
TTTTCACAGAGCAAGTTTGCCGAGCGCTCTCTGTTCTTTTCTAGTTCACA
TCTTTGCAGCACCTGCTCAACTTTTAATATCATAGTTTCAAAATTACATT
GTTTTCACATTATGTTCTCGAACTTCGAAGTTTAGTCAAATTTAGTTTCG
CGAGAATTAATCCGCGATTTCGAGCCTATTTTAATCGCAGAAATTAAATC
CTTgctgatttttaaaattcagatttttgGCGTTAATTGGCATNCTCGGG
AAATTAAATCCTTGctgttttttaaaattcagatttGTGGCGTTAATTGG
CATTTCTAAAGGTtattttcacttgatttttggctgatttgcgaaaactt
tcaaaaagttgatacgctaaaataattttaaaacttttttttttgatcgT
AAAATCTAGCGAAAGTTTATCAGTTAGTTACGAAAGTGGAATTACGTTAA
CGATAGCTAGTGTCTTGCATTAATGTtcttattgatgtttgtttgcCGTT
TGCAAGAATTGAACTTTGAGAGCTTGTTAAATTTCTTCCCATCATGTTTC
TTTCTGGTTTTAACAATTTCTTCAACGAGGGTTAAGTTACAACATTAATG
ATGTAAATAGAATATTATTTGAAAGTGTAATTGTACCCTTACTTTAATTC
GTATAAAAATGTAGATAATTCTTTATTGTCAATCCTTATTTTTTGTGTGC
GTTCGATCAACAAGTCTTGTTTTGTGAATGCTCCTGAATAGACCTTATCg
aggtttttgatttttctaaaaaagcgatgcattgtgggattgtttcgagt
gtattacaatagaaatcttttAGGAATTCcttgagggaattctattgtaa
caCTCGAAGCAATCCCATGATGCATCgcttatttagaaaaattaaaaact
ccgataaggtctattacgCTACTACGCCTGACCTAAGTAAGCATTCCCTC
TCTCTATCTGCTTGAGTATCCCACTCGACTTCATTGCGCATGTGCACAAA
ATAGCGTTTGACGTTTTTCGTTATTTCAaacttattattattattactgt
TATTTTATCAAAGAAAGACAATTTCAATTTCACTAATTatgtaaattata
tttttatatccTTTATAAANGTTATTTTATCAAAGAAAGACAATTTCAAT
TTCACTAATTatgtaaattatatttttttatccttTATAAAAGGGCTATA
ACagagatttataaagcccgaaggtgTGCCGTGgacagaagcttcgcggg
ttttcgaaaacaatagcaacaatattatTTCCGATATAcacttttttgcc
tgcgatggcttaaagtaCTACatatagcccttcgggctttgtAAATTTAT
GGCTCTAGAGTTTATTCAACGGAAACAATTAATACTAGATCAGAAAACTC
GAagcaaaatgtaaaatcaacAATTCCAACACATGAAAAACACAGGCATT
TGAAGTTCTATGATGAGAGTTGCTCATTTCACTAAAGTTTAGCGTGAAGG
CTCTACCAAAATCTGAGTTTGAAATAAGAATTTATTCAATTCTACAACAC
TGTTGCTCTAACAGATTATcgagaaaataaaaacttcaTAAAATTCGAAC
CAAATCTTTTTGTGTCGAAGCCTGATGttcacctcactaaaaaccgggat
ttttcatctcgtttcttagtgagttccactttgacgattttcgaaaaata
gaagcctttcaagtgctctgacgcaaattctatttttcgctactgcagta
gcttcgaaagttaaaagtgacgtcaaaaaatcgaatgtttagagcccgaa
caCCCGGGcacaaaaaattcgaaaagtcgcaaagtggaatagacgtgcgt
aaaaaaacgcgagtgacgtctagtataggctagatGTTCTTTTAAGAAAA
CTAATCAAGAGATGGTCCATTGGAAGGGTGCGAAAAGTGATAACGAAGTA
TATTTGGAGTAATCTTGGAAAACCCGACCCTTTATTGGAAAGATCTTTGT
CCAATACCAATAGTTGTTCGAGCACTAAAGTATTTGCAGGTGCCTAAAAG
ATGCCTCGCTCGCTTGTTAATTTTGCGATTGTGTTTCACCCCGGACCTTA
TCTGGAACACCCTCGCTCATTCCTtaatctttgaaaatattttcagctgt
gaTAAGAACTGTCATTTATTTCATCTACTCTTCTGTGCTCAATTCtagtc
gggggggggggg
Run BLAST on NCBI

transcript from alignment at scaffold_451:742305..745793-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066235 ID=TCONS_00066235|Name=TCONS_00066235|organism=Clytia hemisphaerica|type=transcript|length=3489bp|location=Sequence derived from alignment at scaffold_451:742305..745793- (Clytia hemisphaerica)
TNCCGTTTACTCTAAAGGAGACTGCAAAGTAGCAGGTAAGGCGTCACTTT
ATATCTTTATACTTAAGTTTTGATCAATTTCGCCATGAGCTGCCTATTAG
AACCTTCTATTAGATAGTCGTAACTAAGTTACGTTAAGTTACGCTAAGTT
AAAAGACAAGTCTTGTCTAGCGGTAATGTGGAAGAGTCTTCCCCAAAACT
TTGCTTTATAAATGATGTTTCTGGAGTATTGCTTTGGAAGAAGATTTGCT
CATCAATGAATTATGCTTATCTTTTTAAAGAGATTTTGTAAATTCTTACG
GTTTTTTTAATGTTCAGTCTAAAAATTTTCTGGAAATTGTAACGACTTGG
CTGTTATTTTCCATGAGACCAATTAGTTTCTTTTAATATTTATATCAACT
GATTTGCCATAAAGTTGACAACTCAATGCTAGTGCAATGCCTGCCTTCCC
CTCATTCTTCATGGCAAACTACATGTTTTTTTTATAAGCAAGTGTTTACC
CCTATATCAGGCTCGCATTATGCTTAACATTTTATTGTTCTTAAACAATA
GAGTCATTGTTTAGGTACCTAAAACGGAGCCTGTATATTCTTATAAACGT
CATGCTTATAGAAAAACATGTATCCAAAGCAAAATTCTTTAAACTTTCTT
TTTTTATTTTAGCATTAGACATTTTGGCATTCGAACGATTGTTGGGATCT
TGTATGGAAGTCATGAAGCGAAGCATAGGAGATTACGAAGAACAACTCAA
AAAACTGGGTTTGAGTAATCGAGACCTAAGAGGAAAGTAAACAAAAAAAA
TGATCGAGAACTTTATATAGAGTTATTGTTCGATTATAGGGCGAGAAGAT
TGCAAAGATAAATTTAGTATTTGATGCATGATGGGTTTTGCAAATCCTTT
AGCTTTTTTACAATTTTTAAGGACTGGGCCCCAGTATTGTGTCAGGCTTT
CCTAGAGGCTGTTATGACCGTCTATAGTAGAAGATTCGCCTGTTTCAGAA
TGAAGAAATTTTATGAAGTAGGTATTATAAGCTTGCCAGCCTGCTTGTCT
AGAAATGAGGCAAGCTGATAAGGGTGGGAAGGGCAACTTTTAAACATCAG
AAGTTTTGAAATTATTAGTTTTAGTCATAATTTATTTTTAGCTATAACTA
TATTATTTTTCGTTTTAAAAACGTTATTCAAAGTCATATCATTTTCAAAG
GCTAAGAGATTTGAACATGATACGACTTTGAATATGTTTTTTTTGTTATT
TTAAAATTGATATTGTTCTCTTTGTTATTTTCACAGAGCAAGTTTGCCGA
GCGCTCTCTGTTCTTTTCTAGTTCACATCTTTGCAGCACCTGCTCAACTT
TTAATATCATAGTTTCAAAATTACATTGTTTTCACATTATGTTCTCGAAC
TTCGAAGTTTAGTCAAATTTAGTTTCGCGAGAATTAATCCGCGATTTCGA
GCCTATTTTAATCGCAGAAATTAAATCCTTGCTGATTTTTAAAATTCAGA
TTTTTGGCGTTAATTGGCATNCTCGGGAAATTAAATCCTTGCTGTTTTTT
AAAATTCAGATTTGTGGCGTTAATTGGCATTTCTAAAGGTTATTTTCACT
TGATTTTTGGCTGATTTGCGAAAACTTTCAAAAAGTTGATACGCTAAAAT
AATTTTAAAACTTTTTTTTTTGATCGTAAAATCTAGCGAAAGTTTATCAG
TTAGTTACGAAAGTGGAATTACGTTAACGATAGCTAGTGTCTTGCATTAA
TGTTCTTATTGATGTTTGTTTGCCGTTTGCAAGAATTGAACTTTGAGAGC
TTGTTAAATTTCTTCCCATCATGTTTCTTTCTGGTTTTAACAATTTCTTC
AACGAGGGTTAAGTTACAACATTAATGATGTAAATAGAATATTATTTGAA
AGTGTAATTGTACCCTTACTTTAATTCGTATAAAAATGTAGATAATTCTT
TATTGTCAATCCTTATTTTTTGTGTGCGTTCGATCAACAAGTCTTGTTTT
GTGAATGCTCCTGAATAGACCTTATCGAGGTTTTTGATTTTTCTAAAAAA
GCGATGCATTGTGGGATTGTTTCGAGTGTATTACAATAGAAATCTTTTAG
GAATTCCTTGAGGGAATTCTATTGTAACACTCGAAGCAATCCCATGATGC
ATCGCTTATTTAGAAAAATTAAAAACTCCGATAAGGTCTATTACGCTACT
ACGCCTGACCTAAGTAAGCATTCCCTCTCTCTATCTGCTTGAGTATCCCA
CTCGACTTCATTGCGCATGTGCACAAAATAGCGTTTGACGTTTTTCGTTA
TTTCAAACTTATTATTATTATTACTGTTATTTTATCAAAGAAAGACAATT
TCAATTTCACTAATTATGTAAATTATATTTTTATATCCTTTATAAANGTT
ATTTTATCAAAGAAAGACAATTTCAATTTCACTAATTATGTAAATTATAT
TTTTTTATCCTTTATAAAAGGGCTATAACAGAGATTTATAAAGCCCGAAG
GTGTGCCGTGGACAGAAGCTTCGCGGGTTTTCGAAAACAATAGCAACAAT
ATTATTTCCGATATACACTTTTTTGCCTGCGATGGCTTAAAGTACTACAT
ATAGCCCTTCGGGCTTTGTAAATTTATGGCTCTAGAGTTTATTCAACGGA
AACAATTAATACTAGATCAGAAAACTCGAAGCAAAATGTAAAATCAACAA
TTCCAACACATGAAAAACACAGGCATTTGAAGTTCTATGATGAGAGTTGC
TCATTTCACTAAAGTTTAGCGTGAAGGCTCTACCAAAATCTGAGTTTGAA
ATAAGAATTTATTCAATTCTACAACACTGTTGCTCTAACAGATTATCGAG
AAAATAAAAACTTCATAAAATTCGAACCAAATCTTTTTGTGTCGAAGCCT
GATGTTCACCTCACTAAAAACCGGGATTTTTCATCTCGTTTCTTAGTGAG
TTCCACTTTGACGATTTTCGAAAAATAGAAGCCTTTCAAGTGCTCTGACG
CAAATTCTATTTTTCGCTACTGCAGTAGCTTCGAAAGTTAAAAGTGACGT
CAAAAAATCGAATGTTTAGAGCCCGAACACCCGGGCACAAAAAATTCGAA
AAGTCGCAAAGTGGAATAGACGTGCGTAAAAAAACGCGAGTGACGTCTAG
TATAGGCTAGATGTTCTTTTAAGAAAACTAATCAAGAGATGGTCCATTGG
AAGGGTGCGAAAAGTGATAACGAAGTATATTTGGAGTAATCTTGGAAAAC
CCGACCCTTTATTGGAAAGATCTTTGTCCAATACCAATAGTTGTTCGAGC
ACTAAAGTATTTGCAGGTGCCTAAAAGATGCCTCGCTCGCTTGTTAATTT
TGCGATTGTGTTTCACCCCGGACCTTATCTGGAACACCCTCGCTCATTCC
TTAATCTTTGAAAATATTTTCAGCTGTGATAAGAACTGTCATTTATTTCA
TCTACTCTTCTGTGCTCAATTCTAGTCGGGGGGGGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041451XLOC_041451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066235-exon-scaffold_451-1575043694:745759..745793TCONS_00066235-exon-scaffold_451-1575043694:745759..745793Clytia hemisphaericaexon
TCONS_00066235-exon-scaffold_451-1575043694:742305..745131TCONS_00066235-exon-scaffold_451-1575043694:742305..745131Clytia hemisphaericaexon
TCONS_00066235-exon-scaffold_451-1510915933:745759..745793TCONS_00066235-exon-scaffold_451-1510915933:745759..745793Clytia hemisphaericaexon
TCONS_00066235-exon-scaffold_451-1510915933:742305..745131TCONS_00066235-exon-scaffold_451-1510915933:742305..745131Clytia hemisphaericaexon
TCONS_00066235-exon-scaffold_451-1491911889:745759..745793TCONS_00066235-exon-scaffold_451-1491911889:745759..745793Clytia hemisphaericaexon
TCONS_00066235-exon-scaffold_451-1491911889:742305..745131TCONS_00066235-exon-scaffold_451-1491911889:742305..745131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:742305..745793 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (0.879451 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113938	0.141377	0.0463668	0.0686837	0	0	0	0	0.655228	0.603669	0.879451	0.56002	0.387059	0.484642	0.363626	0.296399	0.348523	0.626382	0.334392	0.572068	0.394325	0.558766	0.178562	0.251323	0	0	0.600801	0.32923	0.29036	0.377776
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
5001000150020002500Sequence
Match NameE-valueIdentityDescription
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