TCONS_00066226 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066226
Unique Name	TCONS_00066226
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4353

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_451:338198..349677-

transcript sequence

>TCONS_00066226 ID=TCONS_00066226|Name=TCONS_00066226|organism=Clytia hemisphaerica|type=transcript|length=4353bp
GAAAGCTTTTTTTAAATGGGTTTTAGTTAAAAACATTCACAATTGAATAA
TGTCACTTTTGAAGATTTACTTGATGTTCTTGGCAATTATCAACCAATGC
TGGAAAGTGCAGTTGTTCAACAGACTGGATGCTGTGTCAAAACACCATCC
AAATGATCCACAAGTCACCTTCGCACTTCGCAAATTTCAAGAATACAACA
AACTACGTCAGACAGGTGTTCTTGACAGGAAAACATTGGAAATAATGAAC
TCCCCTCGATGTGGCATGAAGGATGTTGATAAGTACCAACAAAACAAGTC
ATCATCTTATACACAAGGGAATTTGTTCACCAATACTAAACATACACAAA
CAAACCATTTTAAGCTTACAAACACAGATAATATCTTTTGGTATTACGTC
AGTAACGCAACCATACCTTCATACCTTGATGAAGACCTTGTTTACAAAGC
TCTTGAATATGCGTTCAACCGATGGTCATCCATTACCAACGTTAGATTCA
AAAATGGTGCAATGCATGGAAAGCCTGATATTTACATTGGGTTCTATGCA
GGTAACCATAGCGATCCAAGCCCATTTGACGGTGTTGGTGGAAAGGTAGC
ACATGCTGCAAACCTGGATTTAAGttatcggaaaatcggattcaTCCATT
TTGACTTGGCTGAACACTGGCTGATCAATCAAACATCGGAATATTATTTT
GAAGTTCCGAAACACGATAATAAACCTGGGAGCGGCGTTGATTTCGTTTA
TACGGCTATTCATGAGGTTGGTCATGTACTAGGATTAAACCATGTCCCAA
ATAGAATCAAATCTGTGATGAATACAGTTCTACCAACACCTGTTTTGGGA
GATTATCGTCTGTTTGATTATGATGTGTTGCAGATACAAGCTTCTTATGg
aaaatgtCAACCTAAGAAATTTGATTCGATTTTCTCCATAAATGATCAAA
CATACATCATAGTTGGTCCTTTTGTTTATCTCTTTGACTCGATCAAACAT
ACAGTTGACAGGAAACGACCCTGGCCTCGATTAACTAAAGAAATATTCGG
CATGGATTTGATCAGAGAGGGGTTTTCATTTGAAGGATTTCTCTATTTAT
TCCAGAAAACCAAGTACAATGTTTTACAAACCCAAAACACCATCCCGATG
AAGAAGATCCTTCAATACAACACTCCAGCATGGTATTCAATGATCACTTT
CTCCATCGATGCAGCGTTTACACATATTGATGGATATACTTACCTATTTC
AACAGTCTTTTGTGTATAGGTGGAATTCAACTGGGCCACCGTACGACAGA
TTGCCAAATGGTAAGGTGGCCGATGGTTGGCCAAAGAAAATATCAGCCGT
ATTTCCTGGACTACCAAACAGTATTGATACAGCTTTCAGATGGCCATTAG
ATGGAAGAACATATTTCTTCAAAGGGCCTCATTTTTACATATGGGATCCA
GTTTCCAACAAAGCTGATGGATTATATAGTATTGCTCAATGGAGAAATGT
GtgtgatgtttttgtttgtcgTAAACATTCGAATCCGTTTTGCATTAATA
GTGATTCATAGAAGATTTAAATGGCGGTTGAAAAATTCTGTAACCTCCAC
CATTCATGAAAGGAAACATTAGATATGGGttcataggccatttcacagtc
gcaaagtgtaatgggtaatcaggaccactgcgagCTAATGAAGACTTAca
attggtccaaagttttgaaattttttaaagttttttgcgtctagccaacg
ggaagccgttatggaggcgcaattagtcctgattacccatgatccatttc
aactgtgaaatggcctatatcGTATCTTTAGCATTTAAACGTTTTTCTTA
CAAAATGTCGGATTTAACAAAACGTAACATTTTGGTAACACTTGGGAAAC
TTCCATACAACAATCAATAACAATGATGTTATGATGGATGACTGGGCCCT
CATATTTCTGACTTAGATTGAAATGTCTTGAACCAGTGTTACGTCAAGAt
ttatttttttttgcaaaagggGTATTGTCCTTTAATTCTAAACACTAAAC
AAAAGCAAGCAAGTCGGAAAAACTGATATATTGTATTGATTTTATCTTAT
CAAACTAAGTTAACTTGATTAagccaaaacatttttttttataagaacaa
actatataagaaaaagacttcggtggccaaaatctcaagaacatgttaag
aacatttaaggctttgttggctctaaaacacctgttttcttaggaaaatg
gacaaaaatactcaaaaaatgctgaaaagaagaacatatgttaagaacat
ttttaggcttgaaacccaaaaagcTAAGACCGTCTGAagacttcaaagat
tttggatgagAAGTTCATTATCTTTTCGCTGATCAccccaactggcacac
aacgttgtttcaacgtttatctaacgttcacaacgtccatataacgttag
atgaacgttaaaataacgttgtgtgccAGCTGGGATTGTTGAAAACAGAA
GTGTACCCAAACCCGAAGGGGGGGGTACTTAGGCAAATGGAGGGAACGGT
ATgtaccgcccttaagggtaccttttttagatttccaaagtcccgctaag
ggtcagaaaaatcagaaaatcaaatttcagccccactaagggtaggagaa
ataggaaaattcgaaatttggtcaaaattggtcaaatttgtcctggtaag
ggtcgtaaaattcacaaaattttcctttgctttctcctttttagtcccag
taagtccaagggtcgaaagtcagctcgcaaccctagtacccccgggcccG
GGGGACCCAAACAGAGTTATTATCAACTTCCATAAgctttctttaatttc
tttcattgtaaataggtaaaaataattaccattAGTTTTGTAAGTGACAT
TGTATATAATGaaacagttaaaaaaaataaaacatttaaagATATAAAGC
TGCTCAAATTTTAGGAGATTGATGACGCTGATTTTCGTATCAAGAATATG
ACAAAAGGAAGAACCATCTATTCATAATGTCTTTTGAAACACTTATTCTC
CGTTTACGATGAAGATTCATTTGTTTCGGAATCTGAATCTTTCATTTGGA
catctcacagccccggtggaacttttctcCTCAATGATGATAAAAATTCG
TATTAAAATCCCGATGGGGATAgagattctattgttccaaggttaaaaaa
tccaatggggatggttgtggagtgtaatttttaaacattgaatttcgagg
gGGATGaagtcaaagtcaatttcccagtggggctgaaataccagggtatt
ttcccacagGAGACGAATTtttttgccagattttccagtgggtcagTGAC
AGTCAGTGACAATTAATGAATGGAaccaaatgcaaaaaaaaaaaacaaat
ccagcaaaacaaaaacattaaaattgaaATCCTCTATTTTTAGTTTCCTC
ATTGGCAACTAAGAAAATAAGATCTTGTTGCTTAATTAGATCCCCATGCA
TTTTATTTTCAGTGTCTTTTAAGCCATTCAAACCATCTGAATCTTTCCTG
ACTCCTTGTTTCAATATTTGCCAGTAGCCTACTGTATTAACTGTGTCTTT
TTCATATAAATTGGTAGTTGGCATGGAATTCACATCATCCAGAACTGAAA
TATCAGCTTCTCTCTTGGTCTTGGCCGATTTTAGGAATTCCTGAGACTTG
TGCTGTGGGCTGTTCATCTTTTTGGGCACCATCGAGTTCCCGATCTCACC
TGAATCAAAGTTTTCAGCCTTTCCCCTGCTGATTCTTTTCGGCAAGaacg
atttttcaaacttggaAAAAGGACTCGTCATGTCATCGGGCGCCAATGAA
TTTCCGTTATCTGAAGCTGAACTTTCAATATTCTTGACAAGATTCTTTAG
CAAGACCAATTTCTCGAGCTTGGGGAAATCGATTTTCTTTCCAGGAGCTG
CTTCTTGGCTTTGTTCTGCAGCCAAGttgatatattcatttttcaaTATG
ACAGGCTCTTTTGCATCATGTGGAGTATCTAAATGCTCAAATTTAGCGAA
AGGAAGATTCTCCATTAAAGGACTGACATCTCCATATGGCAGATCTAGAT
CTTCTCGATCATTGAATAGGGAGTCTTGCTCATTTTTCAGGAAAGCAAAG
TTTCGAATTTGAAACAACTTGCGCCTTAAATCTCCATAAGTTTTTGTTGA
TCTTGGAACGCCTCTAAATTTTTCTTGCTCCTTTTTGGCTCGTGTTGGTA
GGAAGGAACCTGGGGCAAGTGAACCATCCGCCATTAAtctttcaatgacg
tcatctttgACGTCTacttgttgtttgttggaattttCGCCATGAATGCT
GAT

Run BLAST on NCBI

transcript from alignment at scaffold_451:338198..349677-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066226 ID=TCONS_00066226|Name=TCONS_00066226|organism=Clytia hemisphaerica|type=transcript|length=11480bp|location=Sequence derived from alignment at scaffold_451:338198..349677- (Clytia hemisphaerica)
GAAAGCTTTTTTTAAATGGGTTTTAGTTAAAAACATTCACAATTGAATAA
TGTCACTTTTGAAGATTTACTTGATGTTCTTGGCAATTATCAACCAATGC
TGGAAAGTGCAGTTGTTCAACAGACTGGATGCTGTGGTAGGTATATTACA
CCCCTCTCACAAACCCAATGGGACCTCTTCCCAAGTTGAAAAAATTAGCC
AAAATACTGTCGCCGGTGGAAAGTTGTACTCCAATTTTTGTCCCCACTGA
AAATAATCAAATAAGCCAATCCTTGCTGCAAAATATTCAATATTGTTCCG
CATCCCCACTGTTTTTTCTGATTTGAAAACAATGTAACCTAAATTCCCAG
CCAGAAAAACATGGGAATATCAATCCCCATCGAGTTTTGGTCCGTTATTT
TTGCCCCCCTCCACTGACTGAAAAAATTCCACCAGGTCTGTGAGAAGGAG
ATGTTACATTGTTCAATCCTGGGCAACAAACTTTTTTCTAATTGTTCACC
TAAAAAAGAAACTTTTAACTACTCCTGCATTCATCCCATACATTTTTCCG
ATGTCTATAAGGAAAAAAATGATTTTAAATGGTTGTGAGTTCATTTGAGA
AGTATAGCCTTATACCATTCTAAAGAGCGGCTTTATTGATAGGTCGGTTG
CTGGCACGTAGAACGGGCTTTGCAGTCTCCATACATAATTTTTGTGTGTA
GCAGTTTAGTGCAGTTAGTGGTTATCTACCTTGACTTCAAGGCAGGGCAA
AATTTGTGGCTTTGCAGTCTCCATACATAATTTTTGTGTGTAGTAGTTTA
GTGGTAGCAGGGCAAAATTTGTGGGAGAGCAGATTTTAATGACGCTGTGA
TAAAGCTTCGTAATATATATAAATGCTGTGTCATAAAAATCTGCTCTTCT
ACACAAATTTTGTGCCACTCTTGGCTACACTACTGGTCCGGGTTAACGCA
TACGATATGAGGGGAATTTAGCTATCACGACTGCTAAAAGATTAGATTTA
AATAAATGTAGGATGGTGATCCATGTTCGTCACATGTTGAAGCCCTTACG
AGAGCTTTTTCGATTAACTTTGCTTACCCAGCTGGCACACAACGTTGTTT
CAACGTTCAAGTAACGTTATATAGACGTTGTGAACATCAAATGGACGTTG
TTTTGACGTTGTGTGCCAGCTGGGTATGCATCAACATGGCATGCTAAAAA
ACAATATGGTCCTATCCTGCTGTTTTCATTGGCTGGAACTTACAACCTTG
TCCCCGTGGCTTTATTTACATTGTCGATGGATTAAACCAGAGAATATTAT
CTAGCACTATCAATAATCATAAAAAAAATCGATAATACGCAGTGAACGAG
GTTTCCTATAGGAAATATAGGCCCAAAATATGCAATAAAAGGTTTACCAA
ATAAGGTGAAAGTAGTTTGTTAACAGCAACGAAGTGCTCTACCAGAAGGT
TTTTTCAATGAAAGGCTTAGAACTGTTTTTCATTTTTAGACATACCTTAT
CAATTATGGTTTTCTACAGTCAAAACACCATCCAAATGATCCACAAGTCA
CCTTCGCACTTCGCAAATTTCAAGAATACAACAAACTACGTCAGACAGGT
GTTCTTGACAGGAAAACATTGGAAATAATGAACTCCCCTCGATGTGGCAT
GAAGGATGTTGATAAGTACCAACAAAACAAGTCATCATCTTATACACAAG
GGAATTTGTTCACCAATACTAAACATACACAAACAAACCATTTTAAGCTT
ACAAACACAGGTAAGAATCCCGGNTGCTCTCAAGAACCTTTTTCGATCAT
TGTTTTGGTGAGTAAATAAACCCAACGGAAATTAATTATGAGTTAATTAA
TGCCATTAATTATTTAAAAAAAAACATTTTTATTTTAGCACCTTATAGAT
TGGGCAACCTAAAGTTAAATTGATATCTTAAAGGGACATAACAGTACTTT
CGAAATTTATAAACAAACTGTATGCAGCGGATACAAAATCAAAACAAATG
TCACATGTCAAAATAAAAGATCAAACCAAATATGGCTAATTATGATTGTT
CAATTGTTTTACAAGTTTGTTTTGGACACGTGATTTTAATTGTTCTCTTT
AATGACACGTGGTTCGCGCAATGTTTACATTTTACTACTTTAATGTCCCT
TTAAGCAATCAAAATAATCCATTTGAGGATAATCTTTAGAGGTGTTTTCA
AGGTTACCGAAGATTTTCTTTCCGATTTCTTGGTAACGTCGTTTAAACGG
AGTCCCTGGATGAGAAACATCCCATGAAATGCCAATGAAATTTTGACTTT
TGCCACAAAATTCCGAATTTCCATTGGAGTGTCAATTATAACTTCAGTTT
AATATCCGGAAAACAAATTCTTAATTTTTACAGGTCCTTTCAACGAATTT
TTGCAAATTCCAACTATAAATTTCTCTAACAAGAACCAAGATCCTATCAA
CTTAAGCCCCCCCTGTTAAACATACGTAGCATGATTCTATTATTATATTA
TACCATGACATGTTATAATTTCAGATAATATCTTTTGGTATTACGTCAGT
AACGCAACCATACCTTCATACCTTGATGAAGACCTTGTTTACAAAGCTCT
TGAATATGCGTTCAACCGATGGTCATCCATTACCAACGTTAGATTCAAAA
ATGGTGCAATGCATGGAAAGCCTGATATTTACATTGGGTTCTATGCAGGT
ATATGAAATTATTTATCATGCTCAAATCTTAAAAATCTAAAATTTCCTCA
TAACCTTTAAATATAACTTCTGCCTTATATAGCATCAAACATTACGTTGG
CATGTTTTCCCAAGTCTTTAATGGCAAAGAATCTCAGTGGATTGTCCATC
CATCTTCTTCCTTATGCATTAAGTTGCCCTTTGCCATATCCCTGTCTCAC
AGCCCCGGTAAAACTTCCTCCTGCCATGGGGATAAAAATCTCTATGGTAT
AGTTGGGATGGGGTGAATAGGACGGGACCGATTTGGAGTGAAATTTTTTA
AATTGAATTATAAATTTGGATAAAGACGAAGTCAATTTTCCAGTGAAAGA
CTCTAGGGTATTTTTCCACCGAGGAACAAATATTGCCCAGGTTTTCTAGC
TGGGCGAGGGTCCCAATGGAGCTGTGGTCCATTCCTTGCCACGAGCACCG
TAGCAAAGCCCTTAGTTATAGTTTTTTATCTAAGTTTATACTTTTTTGTT
TGTTTTCAAGGTAACCATAGCGATCCAAGCCCATTTGACGGTGTTGGTGG
AAAGGTAGCACATGCTGCAAACCTGGATTTAAGTTATCGGAAAATCGGAT
TCATCCATTTTGACTTGGCTGAACACTGGCTGATCAATCAAACATCGGAA
TATTATTTTGAAGTTCCGAAACACGATAATAAACCTGGGAGCGGCGTTGA
TTTCGTTTATACGGCTATTCATGAGGTTAGTTTTAATGTTAGTTCTATGA
AAGTAAGTGAACCACCTCCAGTTGGTGTTTTGTTAATATTTTTGATAATT
TTTCGTATTGTGAAGAATGGTACTTAGATGATTGAATAAAATGAAGGTTA
TTTAAGTTGGATGTTTAGAAAAAAAAATTAAATTGAATTTTGACAAGTTT
AAACATATCATGATAACAAAAGTGTCGATAAAAACACCTAACACTGGCTT
TAAAACCACTGGAAAAGACCTTAGTAAAATGTTGAGCTCGAACAGCTATC
ACATTGCTTTGTTGTTGAGAAAAACAATTGAAAAAAACTACTAACTAGCT
AAAACTACTAGAAAAGCTGCCTCGGCCTTGTGCAATAATGAGATCGGACG
GCTAACGCATTACTTTCCAATTCGCTTCAATTCACTGGGTAAAAAAGAGG
TAGTGGTCAGATTCTGTTTTCATCTATAATTGTACTTCCTTATAATTAAT
GGGAGGGGTTTAGGGAGAACCGCATGCAATACCACCAATTCTTTCTCCAA
TTACCGTCAAACCGTCTAAAAAAGGACCAATATTCCCGCCACCAAAAATT
CCTTTTAAATTCAAGGATTTTGTCCAAAAATTCCGCGAATTTTGAATATT
TTTTGCCAATTCCCGAAATTCCGCAAAATTCATTGGTAAATTCCGTTTTT
CTGGACTGAAATTATCCGATTTTCCGTCCTAATCTCCGAAATTCCGTCTT
TAAAATTTTCATCAAATTCCACTCCTCCGTCCGAAAATAGGGCAGATTCC
ACTTCTCCATCAACCATAAAATCTAATCTAAACGATTAATTTACTTTTTA
GGTTGGTCATGTACTAGGATTAAACCATGTCCCAAATAGAATCAAATCTG
TGATGAATACAGTTCTACCAACACCTGTTTTGGGAGATTATCGTCTGTTT
GATTATGATGTGTTGCAGATACAAGCTTCTTATGGTATGTCTCGATTCTA
GCCCGGTGATTATGGCCAATTCGACAAAGCAAAACAACTTAGCAATCAAT
TATTATCAATGATCCCTTAGGCTTCTGCTCACCCTCTAGCCAAAACAAGT
TCTTAAAGATGTATAGGAATTATATCTATAGAGGTCCGCCATTCTGAGTA
ATGATCCCTGGGTCCATTGGAAATTTCTTAGTGTTTCTTGGCAGCTATAT
GGCAGCTATATTGGGCTGTTTCATAAAATTTCCATAGAGGGGGTGGAAAA
ACCTTTTCAAGGCTAAGAAAGATTTTTGAAAAAATGTGAATACCCCCTGG
AAAATTTCAAAATTTGCAAAATGTCTCTTGGAAAAATTCTTTTCATATCT
TAAAAGTGAAAGTGGAGAACTAAAATCAGTCTTTTACCCCCTGGAAATTT
TGAAATAACCTTTTACCCGCTGGAAAAATGAAAAAATACTTTTTTTATAC
CCCCTGAAAAATTGTTCATCCACCCCCCTGTTTTGGATATAAAATGGAAT
GGCCCATTGGTAACAATAGTTGATTGATACACTGGTTTTGCTAAGAATTC
ATTGACCTTATCCAAATTTTGCAAGGGCTTTTACGAAAAATGATTTTACA
TTCGTCGGCCTAGCATAAAAGCAAGACCGTGAGCACGGACTTCAGTACCT
CCCAGGACTCATATCAAGGTACATATGAACATTAAATATTCATTGTTTTT
TATAGGAAAATGTCAACCTAAGAAATTTGATTCGATTTTCTCCATAAATG
ATCAAACATACATCATAGTTGGTCCTTTTGTTTATCTCTTTGACTCGATC
AAACATACAGTTGACAGGAAACGACCCTGGCCTCGATTAACTAAAGAAAT
ATTCGGCATGGATTTGATCAGAGAGGGGTTTTCATTTGAAGGATTTCTCT
ATTTATTCCAGGTAAGTAAGATTTTTTTATTCTTTAGTTCAAATCTGGTC
ATATCCCAGCTGGCACACAACGTTGTTTCAACGTTTATCTAACGTGAGAT
GGACGTTGAAACAACGTTAGTGTGCCAGCTGGGATAGTCTATAGAGTTTT
TTTCATATTTTGATAAGTTACTTACCTTCGCCATTATGGAAGCAAACATT
CGAAGTTGAAACTCCTGGATGGGGAATGTAGCTATTTTTTCTCGTTTAAG
ACGCGTGAACCGTGCGGTTTTCAAACAAACGCCACATTGAAAGTAAAGTC
CATCGCCTCATTTTGAAATATATGTCACGCAAAAAGAAGGAATGCGTTAA
ATTCAATAAGTGTGCACTCTTTTTTCTTTTACCTATAACTTTTGAAGGAA
TTCTTCAATCTTTATACATTTGGTATCGTTGGAGAGATATTTGTGAGTGG
AACAATTTGAAATAAAAAAATCTTTAAAAAAATGAAGAAGAGAAAAATGA
AGATCTTGTAGAAAAGTGCTATAACTATCATTTTAAATCAAGTGAATTCT
TGATCATCGAACGTCATCACTGTGAAAAAAATTCTCAAAAATAATCATTC
AGTCAAAAGATATCCAAACAAAGTTATAAGCTAGTTGACGTCTAAAAACG
CTGTTTTTTGCTGTTTTTTGCTGTTTTTTGGGGCCAATCACTTATTAACT
TTGTATCATAACTTTATATTGAATAAATATTTTAGTAAAATTTCTTCACA
GTGATGACCTCCTAAAGTCAAAGAATCTCTCCAGTGAAAATGAAAGTTAT
TGCACTTTTCTACAAGATCTTCATATTTTTCTTCTTCATTTTCATCTTCA
TTTTTAAAATTTTTTCAAAGAATTTTTTATTTCAAATTGTTCCACTCACA
AATATCTCTCCAACGATACCAAATTTATAATAATTGAAGAATTCCTTCAA
AAATTATAGGTGAAAGAATAAAGAGTGCACACTTATCGTGAATAGGCTTT
AGAATGGCATGCTTTGACTCCTTTCTATGTCTAGACTGTCTTTACGTAGA
TAAAAATACGATTATTTGTCTGATAACCTTATGTTGCAATTGAAATTACA
AGAGCTGAGAACTAGGAAAATAATTTTAACATTACTAAAATTGCTATATC
TACACGCTTTCTTTATAAGAATATACTTTATAAGAATATCCGTCATGAAA
TTGGCCAAAAAATTAAGAATATGCTTAGAATAACATCATCATGGAATTAG
ATAACTGAGCCTAAAATACCAATTTTTAAAGAACTTAACTTGTAAATTGC
CAATTATTCCCCACCAATGCTAAAAGCTTTCATACAAATGCCAAATCTTT
GCTCGAGGTATGTATTACATGCTACAGTTAGGCTAGGTTGGATGCTAACA
TAAGAATGTATAATAAAAACATTCTAAAATGATTATCCCCAAAAAGTTAA
GAATATTCATCATGAATTGAAAAAACAAAAGTCTTATAAAAAAAGAGTGT
ATAAACAAAGGATTGTAAGTGATTCTATGCTTTATCACGATCCATAACAC
TGACCAGCCTGAAAATAAATAAAACTATTTGGAAAAAGTTAAATTACCAA
TGATTGATTTTGTCTTGCGAATTCGAATTGAAAAAGTCTCCCACTTTAGT
AGAATTTTGCTCATAGTATCCTTATTTACCCAAAATTTAGAAGATAGACA
ATTTACTCTAAGGTCCTGAAGAAACGTCTCCATCCAGTTATTAATTTTCG
AAAGATTTTCGGACCACCTCTCCTGTTCTTAATAGGATCCCCCGTTTATT
TATTTTTCAAAATATTTTCAGCTATTTATTACAAGCTGAATTGGGCTTTT
CCAGAAAAAAAACGTATACCCCCTGTTGAGGAGGTCCATCGTTTTGTGGC
TGGAAATGCTGAAACCCCCTGGAATTCCAGGCAATTTCAGGTTTACTCTG
GAATTCTGAATTTTAGTAGGATCTAAAAGGCTACCCCCATGAAATTCCAG
TTATTTTTGACAGATTCCCTATGGAATTCCGGCACATATCAAACCTTACC
CCCTTGGAACGGAAATGGACCTCCTCAACAGGGGCTATGCGGTTTTTTCT
GAAAAAGCCCATTGCTTTAAAGAGCCTGTTTTTAGCTTATAATTACCTTC
TTTTGGGGGTGTTTGGAGGTACAATAGCGGACCCCTTTTTATTCAGACTC
TCCCCCGTTAATTAGATTTTGAATAAATTTCGGAACCTTCTTAAAATTCG
GACCCACTACTATTCGGTACCATAGAGTAGAAGAAAAGCGATTCACAACC
TAATCGTGGCTACAGAATGTAAAGCTAATTGGCTATCCTCGACATTTATA
AAACATTCCTGATACCATTTGTTGAGAGCACTTTAGCGGGTGAGAGAAAA
AGGAGGAGTCGCTTGAAAAACTGTAAACAAAAAATGACGTATAGAGTCCT
TGAGCAAATATCATCACGCAAAATTGCAGATATGATGATGTAAATGAAAT
CAGAGGCGCAGCCCGGCTGTAATCTAGAAAAAAAATCTTACACTGTGACA
CTTGCGGTAAAAGTAAACCACTTCAGAATAATGCAATGTTGAATCAAAGT
TAAAGTGAAACCTCTTTCACTTTTCAGAAAACCAAGTACAATGTTTTACA
AACCCAAAACACCATCCCGATGAAGAAGATCCTTCAATACAACACTCCAG
CATGGTATTCAATGATCACTTTCTCCATCGATGCAGCGTTTACACATATT
GATGGATATACTTACCTATTTCAACAGTCTTTTGTGTATAGGTGAGTACA
TACTTTGAGGGGGGCGTTGGGAGTTTTGCGTATACCAAAATACCGACGCA
TTCTTCCTAGGTCACCGTCAACATCGACAGCAAAAATATGCATATTTTGC
CATTGCATAGCATGTTATGACATCAAAATCCCGTCATTTTTTATGGTTAC
CCTTTAAACTATAACCTGGCTGTTTCAAGATGCAATACTCTGCAAGGTTT
TTCTTATTCGTTTCTTCCTTTCCCTTTTTCAAGGTGGAATTCAACTGGGC
CACCGTACGACAGATTGCCAAATGGTAAGGTGGCCGATGGTTGGCCAAAG
AAAATATCAGCCGTATTTCCTGGACTACCAAACAGTATTGATACAGCTTT
CAGATGGCCATTAGATGGAAGAACATATTTCTTCAAAGGGCCTCATTTTT
ACATATGGGATCCAGTTTCCAACAAAGCTGATGGATTATATAGTATTGCT
CAATGGAGAAATGTGTGTGATGTTTTTGTTTGTCGTAAACATTCGAATCC
GTTTTGCATTAATAGTGATTCATAGAAGATTTAAATGGCGGTTGAAAAAT
TCTGTAACCTCCACCATTCATGAAAGGAAACATTAGATATGGGTTCATAG
GCCATTTCACAGTCGCAAAGTGTAATGGGTAATCAGGACCACTGCGAGCT
AATGAAGACTTACAATTGGTCCAAAGTTTTGAAATTTTTTAAAGTTTTTT
GCGTCTAGCCAACGGGAAGCCGTTATGGAGGCGCAATTAGTCCTGATTAC
CCATGATCCATTTCAACTGTGAAATGGCCTATATCGTATCTTTAGCATTT
AAACGTTTTTCTTACAAAATGTCGGATTTAACAAAACGTAACATTTTGGT
AACACTTGGGAAACTTCCATACAACAATCAATAACAATGATGTTATGATG
GATGACTGGGCCCTCATATTTCTGACTTAGATTGAAATGTCTTGAACCAG
TGTTACGTCAAGATTTAGTTTTTTTTGCAAAAGGGGTATTGTCCCTTAAC
TAAACAAAAGCAAGTNTTGACAAGATTTAGTTTTTTTTTGCAAAAGGGGT
ATTGTCCTTTAATTCTAAACACTAAACAAAAGCAAGCAAGTCGGAAAAAC
TGATATATTGTATTGATTTTATCTTATCAAACTAAGTTAACTTGATTAAG
CCAAAACATTTTTTTTTATAAGAACAAACTATATAAGAAAAAGACTTCGG
TGGCCAAAATCTCAAGAACATGTTAAGAACATTTAAGGCTTTGTTGGCTC
TAAAACACCTGTTTTCTTAGGAAAATGGACAAAAATACTCAAAAAATGCT
GAAAAGAAGAACATATGTTAAGAACATTTTTAGGCTTGAAACCCAAAAAG
CTAAGACCGTCTGAAGACTTCAAAGATTTTGGATGAGAAGTTCATTATCT
TTTCGCTGATCACCCCAACTGGCACACAACGTTGTTTCAACGTTTATCTA
ACGTTCACAACGTCCATATAACGTTAGATGAACGTTAAAATAACGTTGTG
TGCCAGCTGGGATTGTTGAAAACAGAAGTGTACCCAAACCCGAAGGGGGG
GGTACTTAGGCAAATGGAGGGAACGGTATGTACCGCCCTTAAGGGTACCT
TTTTTAGATTTCCAAAGTCCCGCTAAGGGTCAGAAAAATCAGAAAATCAA
ATTTCAGCCCCACTAAGGGTAGGAGAAATAGGAAAATTCGAAATTTGGTC
AAAATTGGTCAAATTTGTCCTGGTAAGGGTCGTAAAATTCACAAAATTTT
CCTTTGCTTTCTCCTTTTTAGTCCCAGTAAGTCCAAGGGTCGAAAGTCAG
CTCGCAACCCTAGTACCCCCGGGCCCGGGGGACCCAAACAGAGTTATTAT
CAACTTCCATAAGCTTTCTTTAATTTCTTTCATTGTAAATAGGTAAAAAT
AATTACCATTAGTTTTGTAAGTGACATTGTATATAATGAAACAGTTAAAA
AAAATAAAACATTTAAAGATATAAAGCTGCTCAAATTTTAGGAGATTGAT
GACGCTGATTTTCGTATCAAGAATATGACAAAAGGAAGAACCATCTATTC
ATAATGTCTTTTGAAACACTTATTCTCCGTTTACGATGAAGATTCATTTG
TTTCGGAATCTGAATCTTTCATTTGGACATCTCACAGCCCCGGTGGAACT
TTTCTCCTCAATGATGATAAAAATTCGTATTAAAATCCCGATGGGGATAG
AGATTCTATTGTTCCAAGGTTAAAAAATCCAATGGGGATGGTTGTGGAGT
GTAATTTTTAAACATTGAATTTCGAGGGGGATGAAGTCAAAGTCAATTTC
CCAGTGGGGCTGAAATACCAGGGTATTTTCCCACAGGAGACGAATTTTTT
TGCCAGATTTTCCAGTGGGTCAGTGACAGTCAGTGACAATTAATGAATGG
AACCAAATGCAAAAAAAAAAAACAAATCCAGCAAAACAAAAACATTAAAA
TTGAAATCCTCTATTTTTAGTTTCCTCATTGGCAACTAAGAAAATAAGAT
CTTGTTGCTTAATTAGATCCCCATGCATTTTATTTTCAGTGTCTTTTAAG
CCATTCAAACCATCTGAATCTTTCCTGACTCCTTGTTTCAATATTTGCCA
GTAGCCTACTGTATTAACTGTGTCTTTTTCATATAAATTGGTAGTTGGCA
TGGAATTCACATCATCCAGAACTGAAATATCAGCTTCTCTCTTGGTCTTG
GCCGATTTTAGGAATTCCTGAGACTTGTGCTGTGGGCTGTTCATCTTTTT
GGGCACCATCGAGTTCCCGATCTCACCTGAATCAAAGTTTTCAGCCTTTC
CCCTGCTGATTCTTTTCGGCAAGAACGATTTTTCAAACTTGGAAAAAGGA
CTCGTCATGTCATCGGGCGCCAATGAATTTCCGTTATCTGAAGCTGAACT
TTCAATATTCTTGACAAGATTCTTTAGCAAGACCAATTTCTCGAGCTTGG
GGAAATCGATTTTCTTTCCAGGAGCTGCTTCTTGGCTTTGTTCTGCAGCC
AAGTTGATATATTCATTTTTCAATATGACAGGCTCTTTTGCATCATGTGG
AGTATCTAAATGCTCAAATTTAGCGAAAGGAAGATTCTCCATTAAAGGAC
TGACATCTCCATATGGCAGATCTAGATCTTCTCGATCATTGAATAGGGAG
TCTTGCTCATTTTTCAGGAAAGCAAAGTTTCGAATTTGAAACAACTTGCG
CCTTAAATCTCCATAAGTTTTTGTTGATCTTGGAACGCCTCTAAATTTTT
CTTGCTCCTTTTTGGCTCGTGTTGGTAGGAAGGAACCTGGGGCAAGTGAA
CCATCCGCCATTAATCTTTCAATGACGTCATCTTTGACGTCTACTTGTTG
TTTGTTGGAATTTTCGCCATGAATGCTGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041445	XLOC_041445	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_451	supercontig	scaffold_451:338198..349677 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.155138	0	0.0649281	0	0	0	0	0	0.412904	0	0	0	0	0	0.0973359	0	0	0	0.252777	0	0	0	0	0.201847

Blast

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BLAST of TCONS_00066226 vs. Swiss-Prot (Human)
Match: MMP1 (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 1.566e-30
Identity = 143/481 (29.73%), Postives = 206/481 (42.83%), Query Frame = 2

Query:  152 NDPQVTFALRKFQEYNKLRQTGVLDRKTLEIMNSPRCGMKDVDKYQQNKSSSYTQGNLFTNTKHTQTNHFKLTNTDNIFWYYVSNATIPSYLDEDLVYKALEYAFNRWSSITNVRFKNGAMHGKPDIYIGFYAGNHSDPSPFDGVGGKVAHAANLDLSYRKIGFIHFDLAEHWLINQTSEYYFEVPKHDNKPGSGVDFVYTAIHEVGHVLGLNHVPNRIKSVMNTVLPTPVL-GDYRLFDYDVLQIQASYGKCQ----------PKKFDSIFSINDQTYIIVGPFVYLFDSIKHTVDRKRP----------WPRLTKEIFGMDLIREGFSFEGFLYLFQKTKYNVLQTQNTIPMKKILQYNTPAWYSMITFSIDAAFTHID-GYTYLFQQSFVYRWNSTGPPYDRLPNGKVADGWPKKISAVFPGLPNSIDTAFRWPLDGRTYFFKGPHFYIWDPVSNKADGLYSIAQWRNVCDVFVCRKH 1528
            N   V   L++ QE+  L+ TG  D +TL++M  PRCG+ DV ++        T+GN      H       LT       Y + N T P     D+ + A+E AF  WS++T + F      G+ DI I F  G+H D SPFDG GG +AHA          G  HFD  E W  N   EY               +    A HE+GH LGL+H  + I ++M    P+    GD +L   D+  IQA YG+ Q          PK  DS  +  D    I G  ++  D      +   P          WP+L     G++   E F+    +  F+  KY  +Q QN +       Y++  +   +   IDAA +  + G TY F  +  +R++     Y R     +  G+PK I+  FPG+ + +D  F    DG  YFF G   Y +DP + +   L     W      F CRK+
Sbjct:   56 NSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQF------VLTEGNPRWEQTH-------LT-------YRIENYT-PDLPRADVDH-AIEKAFQLWSNVTPLTFTK-VSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIG--GDAHFDEDERW-TNNFREY---------------NLHRVAAHELGHSLGLSHSTD-IGALM---YPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTF-DAITTIRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPN---GLEAAYE-FADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVK-HIDAALSEENTGKTYFFVANKYWRYDE----YKR----SMDPGYPKMIAHDFPGIGHKVDAVFM--KDGFFYFFHGTRQYKFDPKTKRILTLQKANSW------FNCRKN 469

The following BLAST results are available for this feature:

BLAST of TCONS_00066226 vs. Swiss-Prot (Human)

BLAST of TCONS_00066226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

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POSITION

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Match Name	E-value	Identity	Description
MMP1	1.566e-30	29.73	Interstitial collagenase OS=Homo sapiens GN=MMP1 P...	[more]

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TCONS_00066226 (transcript) - C. hemisphaerica

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