TCONS_00066225 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066225
Unique Name	TCONS_00066225
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4143

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_451:338198..348189-

transcript sequence

>TCONS_00066225 ID=TCONS_00066225|Name=TCONS_00066225|organism=Clytia hemisphaerica|type=transcript|length=4143bp
gacatACCTTATCAATTATGGTTTTCTACAGTCAAAACACCATCCAAATG
ATCCACAAGTCACCTTCGCACTTCGCAAATTTCAAGAATACAACAAACTA
CGTCAGACAGGTGTTCTTGACAGGAAAACATTGGAAATAATGAACTCCCC
TCGATGTGGCATGAAGGATGTTGATAAGTACCAACAAAACAAGTCATCAT
CTTATACACAAGGGAATTTGTTCACCAATACTAAACATACACAAACAAAC
CATTTTAAGCTTACAAACACAGATAATATCTTTTGGTATTACGTCAGTAA
CGCAACCATACCTTCATACCTTGATGAAGACCTTGTTTACAAAGCTCTTG
AATATGCGTTCAACCGATGGTCATCCATTACCAACGTTAGATTCAAAAAT
GGTGCAATGCATGGAAAGCCTGATATTTACATTGGGTTCTATGCAGGTAA
CCATAGCGATCCAAGCCCATTTGACGGTGTTGGTGGAAAGGTAGCACATG
CTGCAAACCTGGATTTAAGttatcggaaaatcggattcaTCCATTTTGAC
TTGGCTGAACACTGGCTGATCAATCAAACATCGGAATATTATTTTGAAGT
TCCGAAACACGATAATAAACCTGGGAGCGGCGTTGATTTCGTTTATACGG
CTATTCATGAGGTTGGTCATGTACTAGGATTAAACCATGTCCCAAATAGA
ATCAAATCTGTGATGAATACAGTTCTACCAACACCTGTTTTGGGAGATTA
TCGTCTGTTTGATTATGATGTGTTGCAGATACAAGCTTCTTATGTTGACA
GGAAACGACCCTGGCCTCGATTAACTAAAGAAATATTCGGCATGGATTTG
ATCAGAGAGGGGTTTTCATTTGAAGGATTTCTCTATTTATTCCAGAAAAC
CAAGTACAATGTTTTACAAACCCAAAACACCATCCCGATGAAGAAGATCC
TTCAATACAACACTCCAGCATGGTATTCAATGATCACTTTCTCCATCGAT
GCAGCGTTTACACATATTGATGGATATACTTACCTATTTCAACAGTCTTT
TGTGTATAGGTGGAATTCAACTGGGCCACCGTACGACAGATTGCCAAATG
GTAAGGTGGCCGATGGTTGGCCAAAGAAAATATCAGCCGTATTTCCTGGA
CTACCAAACAGTATTGATACAGCTTTCAGATGGCCATTAGATGGAAGAAC
ATATTTCTTCAAAGGGCCTCATTTTTACATATGGGATCCAGTTTCCAACA
AAGCTGATGGATTATATAGTATTGCTCAATGGAGAAATGTGtgtgatgtt
tttgtttgtcgTAAACATTCGAATCCGTTTTGCATTAATAGTGATTCATA
GAAGATTTAAATGGCGGTTGAAAAATTCTGTAACCTCCACCATTCATGAA
AGGAAACATTAGATATGGGttcataggccatttcacagtcgcaaagtgta
atgggtaatcaggaccactgcgagCTAATGAAGACTTAcaattggtccaa
agttttgaaattttttaaagttttttgcgtctagccaacgggaagccgtt
atggaggcgcaattagtcctgattacccatgatccatttcaactgtgaaa
tggcctatatcGTATCTTTAGCATTTAAACGTTTTTCTTACAAAATGTCG
GATTTAACAAAACGTAACATTTTGGTAACACTTGGGAAACTTCCATACAA
CAATCAATAACAATGATGTTATGATGGATGACTGGGCCCTCATATTTCTG
ACTTAGATTGAAATGTCTTGAACCAGTGTTACGTCAAGAtttattttttt
ttgcaaaagggGTATTGTCCTTTAATTCTAAACACTAAACAAAAGCAAGC
AAGTCGGAAAAACTGATATATTGTATTGATTTTATCTTATCAAACTAAGT
TAACTTGATTAagccaaaacatttttttttataagaacaaactatataag
aaaaagacttcggtggccaaaatctcaagaacatgttaagaacatttaag
gctttgttggctctaaaacacctgttttcttaggaaaatggacaaaaata
ctcaaaaaatgctgaaaagaagaacatatgttaagaacatttttaggctt
gaaacccaaaaagcTAAGACCGTCTGAagacttcaaagattttggatgag
AAGTTCATTATCTTTTCGCTGATCAccccaactggcacacaacgttgttt
caacgtttatctaacgttcacaacgtccatataacgttagatgaacgtta
aaataacgttgtgtgccAGCTGGGATTGTTGAAAACAGAAGTGTACCCAA
ACCCGAAGGGGGGGGTACTTAGGCAAATGGAGGGAACGGTATgtaccgcc
cttaagggtaccttttttagatttccaaagtcccgctaagggtcagaaaa
atcagaaaatcaaatttcagccccactaagggtaggagaaataggaaaat
tcgaaatttggtcaaaattggtcaaatttgtcctggtaagggtcgtaaaa
ttcacaaaattttcctttgctttctcctttttagtcccagtaagtccaag
ggtcgaaagtcagctcgcaaccctagtacccccgggcccGGGGGACCCAA
ACAGAGTTATTATCAACTTCCATAAgctttctttaatttctttcattgta
aataggtaaaaataattaccattAGTTTTGTAAGTGACATTGTATATAAT
GaaacagttaaaaaaaataaaacatttaaagATATAAAGCTGCTCAAATT
TTAGGAGATTGATGACGCTGATTTTCGTATCAAGAATATGACAAAAGGAA
GAACCATCTATTCATAATGTCTTTTGAAACACTTATTCTCCGTTTACGAT
GAAGATTCATTTGTTTCGGAATCTGAATCTTTCATTTGGAcatctcacag
ccccggtggaacttttctcCTCAATGATGATAAAAATTCGTATTAAAATC
CCGATGGGGATAgagattctattgttccaaggttaaaaaatccaatgggg
atggttgtggagtgtaatttttaaacattgaatttcgagggGGATGaagt
caaagtcaatttcccagtggggctgaaataccagggtattttcccacagG
AGACGAATTtttttgccagattttccagtgggtcagTGACAGTCAGTGAC
AATTAATGAATGGAaccaaatgcaaaaaaaaaaaacaaatccagcaaaac
aaaaacattaaaattgaaATCCTCTATTTTTAGTTTCCTCATTGGCAACT
AAGAAAATAAGATCTTGTTGCTTAATTAGATCCCCATGCATTTTATTTTC
AGTGTCTTTTAAGCCATTCAAACCATCTGAATCTTTCCTGACTCCTTGTT
TCAATATTTGCCAGTAGCCTACTGTATTAACTGTGTCTTTTTCATATAAA
TTGGTAGTTGGCATGGAATTCACATCATCCAGAACTGAAATATCAGCTTC
TCTCTTGGTCTTGGCCGATTTTAGGAATTCCTGAGACTTGTGCTGTGGGC
TGTTCATCTTTTTGGGCACCATCGAGTTCCCGATCTCACCTGAATCAAAG
TTTTCAGCCTTTCCCCTGCTGATTCTTTTCGGCAAGaacgatttttcaaa
cttggaAAAAGGACTCGTCATGTCATCGGGCGCCAATGAATTTCCGTTAT
CTGAAGCTGAACTTTCAATATTCTTGACAAGATTCTTTAGCAAGACCAAT
TTCTCGAGCTTGGGGAAATCGATTTTCTTTCCAGGAGCTGCTTCTTGGCT
TTGTTCTGCAGCCAAGttgatatattcatttttcaaTATGACAGGCTCTT
TTGCATCATGTGGAGTATCTAAATGCTCAAATTTAGCGAAAGGAAGATTC
TCCATTAAAGGACTGACATCTCCATATGGCAGATCTAGATCTTCTCGATC
ATTGAATAGGGAGTCTTGCTCATTTTTCAGGAAAGCAAAGTTTCGAATTT
GAAACAACTTGCGCCTTAAATCTCCATAAGTTTTTGTTGATCTTGGAACG
CCTCTAAATTTTTCTTGCTCCTTTTTGGCTCGTGTTGGTAGGAAGGAACC
TGGGGCAAGTGAACCATCCGCCATTAAtctttcaatgacgtcatctttgA
CGTCTacttgttgtttgttggaattttCGCCATGAATGCTGAT

Run BLAST on NCBI

transcript from alignment at scaffold_451:338198..348189-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066225 ID=TCONS_00066225|Name=TCONS_00066225|organism=Clytia hemisphaerica|type=transcript|length=9992bp|location=Sequence derived from alignment at scaffold_451:338198..348189- (Clytia hemisphaerica)
GACATACCTTATCAATTATGGTTTTCTACAGTCAAAACACCATCCAAATG
ATCCACAAGTCACCTTCGCACTTCGCAAATTTCAAGAATACAACAAACTA
CGTCAGACAGGTGTTCTTGACAGGAAAACATTGGAAATAATGAACTCCCC
TCGATGTGGCATGAAGGATGTTGATAAGTACCAACAAAACAAGTCATCAT
CTTATACACAAGGGAATTTGTTCACCAATACTAAACATACACAAACAAAC
CATTTTAAGCTTACAAACACAGGTAAGAATCCCGGNTGCTCTCAAGAACC
TTTTTCGATCATTGTTTTGGTGAGTAAATAAACCCAACGGAAATTAATTA
TGAGTTAATTAATGCCATTAATTATTTAAAAAAAAACATTTTTATTTTAG
CACCTTATAGATTGGGCAACCTAAAGTTAAATTGATATCTTAAAGGGACA
TAACAGTACTTTCGAAATTTATAAACAAACTGTATGCAGCGGATACAAAA
TCAAAACAAATGTCACATGTCAAAATAAAAGATCAAACCAAATATGGCTA
ATTATGATTGTTCAATTGTTTTACAAGTTTGTTTTGGACACGTGATTTTA
ATTGTTCTCTTTAATGACACGTGGTTCGCGCAATGTTTACATTTTACTAC
TTTAATGTCCCTTTAAGCAATCAAAATAATCCATTTGAGGATAATCTTTA
GAGGTGTTTTCAAGGTTACCGAAGATTTTCTTTCCGATTTCTTGGTAACG
TCGTTTAAACGGAGTCCCTGGATGAGAAACATCCCATGAAATGCCAATGA
AATTTTGACTTTTGCCACAAAATTCCGAATTTCCATTGGAGTGTCAATTA
TAACTTCAGTTTAATATCCGGAAAACAAATTCTTAATTTTTACAGGTCCT
TTCAACGAATTTTTGCAAATTCCAACTATAAATTTCTCTAACAAGAACCA
AGATCCTATCAACTTAAGCCCCCCCTGTTAAACATACGTAGCATGATTCT
ATTATTATATTATACCATGACATGTTATAATTTCAGATAATATCTTTTGG
TATTACGTCAGTAACGCAACCATACCTTCATACCTTGATGAAGACCTTGT
TTACAAAGCTCTTGAATATGCGTTCAACCGATGGTCATCCATTACCAACG
TTAGATTCAAAAATGGTGCAATGCATGGAAAGCCTGATATTTACATTGGG
TTCTATGCAGGTATATGAAATTATTTATCATGCTCAAATCTTAAAAATCT
AAAATTTCCTCATAACCTTTAAATATAACTTCTGCCTTATATAGCATCAA
ACATTACGTTGGCATGTTTTCCCAAGTCTTTAATGGCAAAGAATCTCAGT
GGATTGTCCATCCATCTTCTTCCTTATGCATTAAGTTGCCCTTTGCCATA
TCCCTGTCTCACAGCCCCGGTAAAACTTCCTCCTGCCATGGGGATAAAAA
TCTCTATGGTATAGTTGGGATGGGGTGAATAGGACGGGACCGATTTGGAG
TGAAATTTTTTAAATTGAATTATAAATTTGGATAAAGACGAAGTCAATTT
TCCAGTGAAAGACTCTAGGGTATTTTTCCACCGAGGAACAAATATTGCCC
AGGTTTTCTAGCTGGGCGAGGGTCCCAATGGAGCTGTGGTCCATTCCTTG
CCACGAGCACCGTAGCAAAGCCCTTAGTTATAGTTTTTTATCTAAGTTTA
TACTTTTTTGTTTGTTTTCAAGGTAACCATAGCGATCCAAGCCCATTTGA
CGGTGTTGGTGGAAAGGTAGCACATGCTGCAAACCTGGATTTAAGTTATC
GGAAAATCGGATTCATCCATTTTGACTTGGCTGAACACTGGCTGATCAAT
CAAACATCGGAATATTATTTTGAAGTTCCGAAACACGATAATAAACCTGG
GAGCGGCGTTGATTTCGTTTATACGGCTATTCATGAGGTTAGTTTTAATG
TTAGTTCTATGAAAGTAAGTGAACCACCTCCAGTTGGTGTTTTGTTAATA
TTTTTGATAATTTTTCGTATTGTGAAGAATGGTACTTAGATGATTGAATA
AAATGAAGGTTATTTAAGTTGGATGTTTAGAAAAAAAAATTAAATTGAAT
TTTGACAAGTTTAAACATATCATGATAACAAAAGTGTCGATAAAAACACC
TAACACTGGCTTTAAAACCACTGGAAAAGACCTTAGTAAAATGTTGAGCT
CGAACAGCTATCACATTGCTTTGTTGTTGAGAAAAACAATTGAAAAAAAC
TACTAACTAGCTAAAACTACTAGAAAAGCTGCCTCGGCCTTGTGCAATAA
TGAGATCGGACGGCTAACGCATTACTTTCCAATTCGCTTCAATTCACTGG
GTAAAAAAGAGGTAGTGGTCAGATTCTGTTTTCATCTATAATTGTACTTC
CTTATAATTAATGGGAGGGGTTTAGGGAGAACCGCATGCAATACCACCAA
TTCTTTCTCCAATTACCGTCAAACCGTCTAAAAAAGGACCAATATTCCCG
CCACCAAAAATTCCTTTTAAATTCAAGGATTTTGTCCAAAAATTCCGCGA
ATTTTGAATATTTTTTGCCAATTCCCGAAATTCCGCAAAATTCATTGGTA
AATTCCGTTTTTCTGGACTGAAATTATCCGATTTTCCGTCCTAATCTCCG
AAATTCCGTCTTTAAAATTTTCATCAAATTCCACTCCTCCGTCCGAAAAT
AGGGCAGATTCCACTTCTCCATCAACCATAAAATCTAATCTAAACGATTA
ATTTACTTTTTAGGTTGGTCATGTACTAGGATTAAACCATGTCCCAAATA
GAATCAAATCTGTGATGAATACAGTTCTACCAACACCTGTTTTGGGAGAT
TATCGTCTGTTTGATTATGATGTGTTGCAGATACAAGCTTCTTATGGTAT
GTCTCGATTCTAGCCCGGTGATTATGGCCAATTCGACAAAGCAAAACAAC
TTAGCAATCAATTATTATCAATGATCCCTTAGGCTTCTGCTCACCCTCTA
GCCAAAACAAGTTCTTAAAGATGTATAGGAATTATATCTATAGAGGTCCG
CCATTCTGAGTAATGATCCCTGGGTCCATTGGAAATTTCTTAGTGTTTCT
TGGCAGCTATATGGCAGCTATATTGGGCTGTTTCATAAAATTTCCATAGA
GGGGGTGGAAAAACCTTTTCAAGGCTAAGAAAGATTTTTGAAAAAATGTG
AATACCCCCTGGAAAATTTCAAAATTTGCAAAATGTCTCTTGGAAAAATT
CTTTTCATATCTTAAAAGTGAAAGTGGAGAACTAAAATCAGTCTTTTACC
CCCTGGAAATTTTGAAATAACCTTTTACCCGCTGGAAAAATGAAAAAATA
CTTTTTTTATACCCCCTGAAAAATTGTTCATCCACCCCCCTGTTTTGGAT
ATAAAATGGAATGGCCCATTGGTAACAATAGTTGATTGATACACTGGTTT
TGCTAAGAATTCATTGACCTTATCCAAATTTTGCAAGGGCTTTTACGAAA
AATGATTTTACATTCGTCGGCCTAGCATAAAAGCAAGACCGTGAGCACGG
ACTTCAGTACCTCCCAGGACTCATATCAAGGTACATATGAACATTAAATA
TTCATTGTTTTTTATAGGAAAATGTCAACCTAAGAAATTTGATTCGATTT
TCTCCATAAATGATCAAACATACATCATAGTTGGTCCTTTTGTTTATCTC
TTTGACTCGATCAAACATACAGTTGACAGGAAACGACCCTGGCCTCGATT
AACTAAAGAAATATTCGGCATGGATTTGATCAGAGAGGGGTTTTCATTTG
AAGGATTTCTCTATTTATTCCAGGTAAGTAAGATTTTTTTATTCTTTAGT
TCAAATCTGGTCATATCCCAGCTGGCACACAACGTTGTTTCAACGTTTAT
CTAACGTGAGATGGACGTTGAAACAACGTTAGTGTGCCAGCTGGGATAGT
CTATAGAGTTTTTTTCATATTTTGATAAGTTACTTACCTTCGCCATTATG
GAAGCAAACATTCGAAGTTGAAACTCCTGGATGGGGAATGTAGCTATTTT
TTCTCGTTTAAGACGCGTGAACCGTGCGGTTTTCAAACAAACGCCACATT
GAAAGTAAAGTCCATCGCCTCATTTTGAAATATATGTCACGCAAAAAGAA
GGAATGCGTTAAATTCAATAAGTGTGCACTCTTTTTTCTTTTACCTATAA
CTTTTGAAGGAATTCTTCAATCTTTATACATTTGGTATCGTTGGAGAGAT
ATTTGTGAGTGGAACAATTTGAAATAAAAAAATCTTTAAAAAAATGAAGA
AGAGAAAAATGAAGATCTTGTAGAAAAGTGCTATAACTATCATTTTAAAT
CAAGTGAATTCTTGATCATCGAACGTCATCACTGTGAAAAAAATTCTCAA
AAATAATCATTCAGTCAAAAGATATCCAAACAAAGTTATAAGCTAGTTGA
CGTCTAAAAACGCTGTTTTTTGCTGTTTTTTGCTGTTTTTTGGGGCCAAT
CACTTATTAACTTTGTATCATAACTTTATATTGAATAAATATTTTAGTAA
AATTTCTTCACAGTGATGACCTCCTAAAGTCAAAGAATCTCTCCAGTGAA
AATGAAAGTTATTGCACTTTTCTACAAGATCTTCATATTTTTCTTCTTCA
TTTTCATCTTCATTTTTAAAATTTTTTCAAAGAATTTTTTATTTCAAATT
GTTCCACTCACAAATATCTCTCCAACGATACCAAATTTATAATAATTGAA
GAATTCCTTCAAAAATTATAGGTGAAAGAATAAAGAGTGCACACTTATCG
TGAATAGGCTTTAGAATGGCATGCTTTGACTCCTTTCTATGTCTAGACTG
TCTTTACGTAGATAAAAATACGATTATTTGTCTGATAACCTTATGTTGCA
ATTGAAATTACAAGAGCTGAGAACTAGGAAAATAATTTTAACATTACTAA
AATTGCTATATCTACACGCTTTCTTTATAAGAATATACTTTATAAGAATA
TCCGTCATGAAATTGGCCAAAAAATTAAGAATATGCTTAGAATAACATCA
TCATGGAATTAGATAACTGAGCCTAAAATACCAATTTTTAAAGAACTTAA
CTTGTAAATTGCCAATTATTCCCCACCAATGCTAAAAGCTTTCATACAAA
TGCCAAATCTTTGCTCGAGGTATGTATTACATGCTACAGTTAGGCTAGGT
TGGATGCTAACATAAGAATGTATAATAAAAACATTCTAAAATGATTATCC
CCAAAAAGTTAAGAATATTCATCATGAATTGAAAAAACAAAAGTCTTATA
AAAAAAGAGTGTATAAACAAAGGATTGTAAGTGATTCTATGCTTTATCAC
GATCCATAACACTGACCAGCCTGAAAATAAATAAAACTATTTGGAAAAAG
TTAAATTACCAATGATTGATTTTGTCTTGCGAATTCGAATTGAAAAAGTC
TCCCACTTTAGTAGAATTTTGCTCATAGTATCCTTATTTACCCAAAATTT
AGAAGATAGACAATTTACTCTAAGGTCCTGAAGAAACGTCTCCATCCAGT
TATTAATTTTCGAAAGATTTTCGGACCACCTCTCCTGTTCTTAATAGGAT
CCCCCGTTTATTTATTTTTCAAAATATTTTCAGCTATTTATTACAAGCTG
AATTGGGCTTTTCCAGAAAAAAAACGTATACCCCCTGTTGAGGAGGTCCA
TCGTTTTGTGGCTGGAAATGCTGAAACCCCCTGGAATTCCAGGCAATTTC
AGGTTTACTCTGGAATTCTGAATTTTAGTAGGATCTAAAAGGCTACCCCC
ATGAAATTCCAGTTATTTTTGACAGATTCCCTATGGAATTCCGGCACATA
TCAAACCTTACCCCCTTGGAACGGAAATGGACCTCCTCAACAGGGGCTAT
GCGGTTTTTTCTGAAAAAGCCCATTGCTTTAAAGAGCCTGTTTTTAGCTT
ATAATTACCTTCTTTTGGGGGTGTTTGGAGGTACAATAGCGGACCCCTTT
TTATTCAGACTCTCCCCCGTTAATTAGATTTTGAATAAATTTCGGAACCT
TCTTAAAATTCGGACCCACTACTATTCGGTACCATAGAGTAGAAGAAAAG
CGATTCACAACCTAATCGTGGCTACAGAATGTAAAGCTAATTGGCTATCC
TCGACATTTATAAAACATTCCTGATACCATTTGTTGAGAGCACTTTAGCG
GGTGAGAGAAAAAGGAGGAGTCGCTTGAAAAACTGTAAACAAAAAATGAC
GTATAGAGTCCTTGAGCAAATATCATCACGCAAAATTGCAGATATGATGA
TGTAAATGAAATCAGAGGCGCAGCCCGGCTGTAATCTAGAAAAAAAATCT
TACACTGTGACACTTGCGGTAAAAGTAAACCACTTCAGAATAATGCAATG
TTGAATCAAAGTTAAAGTGAAACCTCTTTCACTTTTCAGAAAACCAAGTA
CAATGTTTTACAAACCCAAAACACCATCCCGATGAAGAAGATCCTTCAAT
ACAACACTCCAGCATGGTATTCAATGATCACTTTCTCCATCGATGCAGCG
TTTACACATATTGATGGATATACTTACCTATTTCAACAGTCTTTTGTGTA
TAGGTGAGTACATACTTTGAGGGGGGCGTTGGGAGTTTTGCGTATACCAA
AATACCGACGCATTCTTCCTAGGTCACCGTCAACATCGACAGCAAAAATA
TGCATATTTTGCCATTGCATAGCATGTTATGACATCAAAATCCCGTCATT
TTTTATGGTTACCCTTTAAACTATAACCTGGCTGTTTCAAGATGCAATAC
TCTGCAAGGTTTTTCTTATTCGTTTCTTCCTTTCCCTTTTTCAAGGTGGA
ATTCAACTGGGCCACCGTACGACAGATTGCCAAATGGTAAGGTGGCCGAT
GGTTGGCCAAAGAAAATATCAGCCGTATTTCCTGGACTACCAAACAGTAT
TGATACAGCTTTCAGATGGCCATTAGATGGAAGAACATATTTCTTCAAAG
GGCCTCATTTTTACATATGGGATCCAGTTTCCAACAAAGCTGATGGATTA
TATAGTATTGCTCAATGGAGAAATGTGTGTGATGTTTTTGTTTGTCGTAA
ACATTCGAATCCGTTTTGCATTAATAGTGATTCATAGAAGATTTAAATGG
CGGTTGAAAAATTCTGTAACCTCCACCATTCATGAAAGGAAACATTAGAT
ATGGGTTCATAGGCCATTTCACAGTCGCAAAGTGTAATGGGTAATCAGGA
CCACTGCGAGCTAATGAAGACTTACAATTGGTCCAAAGTTTTGAAATTTT
TTAAAGTTTTTTGCGTCTAGCCAACGGGAAGCCGTTATGGAGGCGCAATT
AGTCCTGATTACCCATGATCCATTTCAACTGTGAAATGGCCTATATCGTA
TCTTTAGCATTTAAACGTTTTTCTTACAAAATGTCGGATTTAACAAAACG
TAACATTTTGGTAACACTTGGGAAACTTCCATACAACAATCAATAACAAT
GATGTTATGATGGATGACTGGGCCCTCATATTTCTGACTTAGATTGAAAT
GTCTTGAACCAGTGTTACGTCAAGATTTAGTTTTTTTTGCAAAAGGGGTA
TTGTCCCTTAACTAAACAAAAGCAAGTNTTGACAAGATTTAGTTTTTTTT
TGCAAAAGGGGTATTGTCCTTTAATTCTAAACACTAAACAAAAGCAAGCA
AGTCGGAAAAACTGATATATTGTATTGATTTTATCTTATCAAACTAAGTT
AACTTGATTAAGCCAAAACATTTTTTTTTATAAGAACAAACTATATAAGA
AAAAGACTTCGGTGGCCAAAATCTCAAGAACATGTTAAGAACATTTAAGG
CTTTGTTGGCTCTAAAACACCTGTTTTCTTAGGAAAATGGACAAAAATAC
TCAAAAAATGCTGAAAAGAAGAACATATGTTAAGAACATTTTTAGGCTTG
AAACCCAAAAAGCTAAGACCGTCTGAAGACTTCAAAGATTTTGGATGAGA
AGTTCATTATCTTTTCGCTGATCACCCCAACTGGCACACAACGTTGTTTC
AACGTTTATCTAACGTTCACAACGTCCATATAACGTTAGATGAACGTTAA
AATAACGTTGTGTGCCAGCTGGGATTGTTGAAAACAGAAGTGTACCCAAA
CCCGAAGGGGGGGGTACTTAGGCAAATGGAGGGAACGGTATGTACCGCCC
TTAAGGGTACCTTTTTTAGATTTCCAAAGTCCCGCTAAGGGTCAGAAAAA
TCAGAAAATCAAATTTCAGCCCCACTAAGGGTAGGAGAAATAGGAAAATT
CGAAATTTGGTCAAAATTGGTCAAATTTGTCCTGGTAAGGGTCGTAAAAT
TCACAAAATTTTCCTTTGCTTTCTCCTTTTTAGTCCCAGTAAGTCCAAGG
GTCGAAAGTCAGCTCGCAACCCTAGTACCCCCGGGCCCGGGGGACCCAAA
CAGAGTTATTATCAACTTCCATAAGCTTTCTTTAATTTCTTTCATTGTAA
ATAGGTAAAAATAATTACCATTAGTTTTGTAAGTGACATTGTATATAATG
AAACAGTTAAAAAAAATAAAACATTTAAAGATATAAAGCTGCTCAAATTT
TAGGAGATTGATGACGCTGATTTTCGTATCAAGAATATGACAAAAGGAAG
AACCATCTATTCATAATGTCTTTTGAAACACTTATTCTCCGTTTACGATG
AAGATTCATTTGTTTCGGAATCTGAATCTTTCATTTGGACATCTCACAGC
CCCGGTGGAACTTTTCTCCTCAATGATGATAAAAATTCGTATTAAAATCC
CGATGGGGATAGAGATTCTATTGTTCCAAGGTTAAAAAATCCAATGGGGA
TGGTTGTGGAGTGTAATTTTTAAACATTGAATTTCGAGGGGGATGAAGTC
AAAGTCAATTTCCCAGTGGGGCTGAAATACCAGGGTATTTTCCCACAGGA
GACGAATTTTTTTGCCAGATTTTCCAGTGGGTCAGTGACAGTCAGTGACA
ATTAATGAATGGAACCAAATGCAAAAAAAAAAAACAAATCCAGCAAAACA
AAAACATTAAAATTGAAATCCTCTATTTTTAGTTTCCTCATTGGCAACTA
AGAAAATAAGATCTTGTTGCTTAATTAGATCCCCATGCATTTTATTTTCA
GTGTCTTTTAAGCCATTCAAACCATCTGAATCTTTCCTGACTCCTTGTTT
CAATATTTGCCAGTAGCCTACTGTATTAACTGTGTCTTTTTCATATAAAT
TGGTAGTTGGCATGGAATTCACATCATCCAGAACTGAAATATCAGCTTCT
CTCTTGGTCTTGGCCGATTTTAGGAATTCCTGAGACTTGTGCTGTGGGCT
GTTCATCTTTTTGGGCACCATCGAGTTCCCGATCTCACCTGAATCAAAGT
TTTCAGCCTTTCCCCTGCTGATTCTTTTCGGCAAGAACGATTTTTCAAAC
TTGGAAAAAGGACTCGTCATGTCATCGGGCGCCAATGAATTTCCGTTATC
TGAAGCTGAACTTTCAATATTCTTGACAAGATTCTTTAGCAAGACCAATT
TCTCGAGCTTGGGGAAATCGATTTTCTTTCCAGGAGCTGCTTCTTGGCTT
TGTTCTGCAGCCAAGTTGATATATTCATTTTTCAATATGACAGGCTCTTT
TGCATCATGTGGAGTATCTAAATGCTCAAATTTAGCGAAAGGAAGATTCT
CCATTAAAGGACTGACATCTCCATATGGCAGATCTAGATCTTCTCGATCA
TTGAATAGGGAGTCTTGCTCATTTTTCAGGAAAGCAAAGTTTCGAATTTG
AAACAACTTGCGCCTTAAATCTCCATAAGTTTTTGTTGATCTTGGAACGC
CTCTAAATTTTTCTTGCTCCTTTTTGGCTCGTGTTGGTAGGAAGGAACCT
GGGGCAAGTGAACCATCCGCCATTAATCTTTCAATGACGTCATCTTTGAC
GTCTACTTGTTGTTTGTTGGAATTTTCGCCATGAATGCTGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041445	XLOC_041445	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_451	supercontig	scaffold_451:338198..348189 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0300404	0.0292941	0.10204	0.232937	0.0405112	0.212631	0	0.151323	0	0.191239	0.116431	0.119137	0.0699542	0	0	0.0501414	0.0740017	0.0744414	0.165545	0.100491	0	0.069871	0.0838954	0.175895	0	0.131903	0.296557	0.106481	0.100028	0

Blast

[Close]

BLAST of TCONS_00066225 vs. Swiss-Prot (Human)
Match: MMP1 (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.249e-24
Identity = 136/483 (28.16%), Postives = 197/483 (40.79%), Query Frame = 2

Query:   29 QSKHHPNDPQVTFALRKFQEYNKLRQTGVLDRKTLEIMNSPRCGMKDVDKYQQNKSSSYTQGNLFTNTKHTQTNHFKLTNTDNIFWYYVSNATIPSYLDEDLVYKALEYAFNRWSSITNVRFKNGAMHGKPDIYIGFYAGNHSDPSPFDGVGGKVAHAANLDLSYRKIGFIHFDLAEHWLINQTSEYYFEVPKHDNKPGSGVDFVYTAIHEVGHVLGLNHVPNRIKSVM----------------------------NTVLP----TPVLGDYRL-FDY------DVLQIQASYVDRKRP-------------WPRLTKEIFGMDLIREGFSFEGFLYLFQKTKYNVLQTQNTIPMKKILQYNTPAWYSMITFSIDAAFTHID-GYTYLFQQSFVYRWNSTGPPYDRLPNGKVADGWPKKISAVFPGLPNSIDTAFRWPLDGRTYFFKGPHFYIWDPVSNKADGLYSIAQWRNVCDVFVCRKH 1318
            Q +   N   V   L++ QE+  L+ TG  D +TL++M  PRCG+ DV ++        T+GN      H       LT       Y + N T P     D+ + A+E AF  WS++T + F      G+ DI I F  G+H D SPFDG GG +AHA          G  HFD  E W  N   EY               +    A HE+GH LGL+H  + I ++M                            N V P    TP   D +L FD       +V+  +  +  R  P             WP+L     G++   E F+    +  F+  KY  +Q QN +       Y++  +   +   IDAA +  + G TY F  +  +R++     Y R     +  G+PK I+  FPG+ + +D  F    DG  YFF G   Y +DP + +   L     W      F CRK+
Sbjct:   50 QVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQF------VLTEGNPRWEQTH-------LT-------YRIENYT-PDLPRADVDH-AIEKAFQLWSNVTPLTFTK-VSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIG--GDAHFDEDERW-TNNFREY---------------NLHRVAAHELGHSLGLSHSTD-IGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITTIRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPN---GLEAAYE-FADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVK-HIDAALSEENTGKTYFFVANKYWRYDE----YKR----SMDPGYPKMIAHDFPGIGHKVDAVFM--KDGFFYFFHGTRQYKFDPKTKRILTLQKANSW------FNCRKN 469

The following BLAST results are available for this feature:

BLAST of TCONS_00066225 vs. Swiss-Prot (Human)

BLAST of TCONS_00066225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
MMP1	1.249e-24	28.16	Interstitial collagenase OS=Homo sapiens GN=MMP1 P...	[more]

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TCONS_00066225 (transcript) - C. hemisphaerica

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