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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066222 ID=TCONS_00066222|Name=TCONS_00066222|organism=Clytia hemisphaerica|type=transcript|length=2286bp
cttgattttcttttctttttcaaatttataaaattttgtttcattttcga
tGTTAAAAATTAGTTTcacgctaaaatttcaaaattcaaaataagagAAG
AAGTGACATAGTCACGaaggaaagaattttttttgctcatccGATTTTCA
TACGTTGAAAGTTGAGGTCAActgaaaattacttttttgcaacagatatg
tttttattgtttggctttcttctatttctttgtCATCAATTTCAAGATAC
TCATGGATTATCCATCAGAGGCCCAAATGACGCACAGCAATTGATAAATT
CTCATGGTGAGAATGATTTGCCAAGTGGTGGAATGTGGGAAACTGCAAAA
TCACAAGCTATGGAGACATATCGTAAAGATTCCCGGCGGGGAATTCCCAA
AAGAGGTCGATCCTCTTTCCTGGCTATTGGAAAGAAAGACGATTCCCTGA
GCCTGGGgtcgaaaatgaagaaatcttTGGAATCACCCTCACTTAGTGTT
TGGAGACGAGGAGATTCCCTTCACTCAATCTTAAGGGTAAATCCTTCTCT
GGGGATCTGGAAGCGAGGAGATTCCCTGATGAGAAGATTTGGAAGGAAGA
ATTTTGGAAAAGATAACTCTCGGAGGTCACTGGTGAGGGAAATTGAAAAT
GACGCTTTTGGAATGAATAGGAAAGACGAATTTCCCTCACCAGGTATGTG
GGAAAAAGCAAAATCCCAATATTTTGGAAAGAGAGAATTTAGAAATTCCA
TCCTCGGAAAGCATGGGAAAGACGAATTCCCCTCGCCAGCCATGTGGGAG
AAAGCGAAGAACCAATATTTTGGAAAGAGGGATATTAGAAATTCCATCCT
TGGAAAGCATGGGAAAGACGAATTCCCTTCACCAGCCATGTGGGAAAAAG
CAAAGAACCAATATTTTGGCAAAGGAAGATAAACATTACAGATATTCAAC
ATACAATATAATTTAACTATCCAGATTGTCCTGATTGCATTTTAAgttga
aaaacattgaaaattctTGCAAGATATTTTACATCTAGTCAGTATCAgct
ttaacacttttaaaagGGATTAGGCTCAAGTTTATCGGGATCAAATGCCG
TCAAAACAAGCGTAAGTATGAGTGTATCAGTACAATGATTCAAAAATTTG
ACGTCCATTCAACCCTGGCAAACTCTGACCTAGTCCCTttcattcaactt
tttcgaacGAAGACAGGTGTATTTTTATGATCTTtatgttttttactttt
cttatatAAATTTCACCATAACTATTGAAAAaaggaccgtggcacttaaa
ggttTAATCCTTAGATCCTTTTTGagttattaaaaaatatatggttaact
atgtgtaaattttttttccagaataTTAAACCATAAACCATTAATTAGTC
ACCATTCCAGGTTCTAAAAATCATTATTTATATTATGTGCTCATTGGGAT
TGAGAAATTGAGCCACATTTCGATAGTTTTTACTTCAGTTAAGTTTCCAA
TCAGCCGGACAGTCTTTCTAAATGTCTTTCTAAATCNTCGGGATCAAATG
CCGTCAAAATAAGCGTAAGTATGAGTGTATCAATACAATGACAAAAATTT
GACGTCCATCCAACCCTGGAAAACTCCGACCTAGTCCCtttcattcaact
tttttgaacgAAGACAGGTGTATTTTTATGATCTTtatgttttttacttt
tcttatatAAATTTCACCATAACTATTGAAGAaaggaccgtggcacttaa
agggttaatccTTGAAGCCTTTTTGagttatcaaaaaataaatggTTAAC
CAGAATCAAACATAAACCATTAACCAAGTTCTAACTAGTCACCATTCCAG
GTTTCTCAGTCATCATTTATTTTAAGTGCCTATAGGAATCCGAAAATTGA
TCCAcattttaatagtttttattCAGTTTAGCTTCGAATTAGTCGGACAA
TCTTTCTAAATGTCTTTCTAAATCACCGCTGGATTACTTATTGTTGGCTA
TGCATCGGTCCTTCCATTAGCCTGTCACTCTCTGTGGTACTATTTCTGTT
TTTATAGGAGCAATGCTTTATGACAATCTGAaatttgtcaattcaagttc
atttcgGAAGAAATATTCCATTGTCTACTGTTTTGAGTCGCCTGAGTCAC
TTGGCCTTCACATCAACCGGCTTCTTGATAACGTTTATCCGGATTGATAG
ACATACATTGAGGAAATGCAGAATTGATATTAATACATcatttcgaccgt
agtcgcgtggtcaggcgcgtgccactttttATCAAC Run BLAST on NCBI protein sequence of pp9 precursor >TCONS_00066222-protein ID=TCONS_00066222-protein|Name=pp9 precursor|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MFLLFGFLLFLCHQFQDTHGLSIRGPNDAQQLINSHGENDLPSGGMWETA
KSQAMETYRKDSRRGIPKRGRSSFLAIGKKDDSLSLGSKMKKSLESPSLS
VWRRGDSLHSILRVNPSLGIWKRGDSLMRRFGRKNFGKDNSRRSLVREIE
NDAFGMNRKDEFPSPGMWEKAKSQYFGKREFRNSILGKHGKDEFPSPAMW
EKAKNQYFGKRDIRNSILGKHGKDEFPSPAMWEKAKNQYFGKGR Run BLAST on NCBI transcript from alignment at scaffold_451:282542..285175- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066222 ID=TCONS_00066222|Name=TCONS_00066222|organism=Clytia hemisphaerica|type=transcript|length=2634bp|location=Sequence derived from alignment at scaffold_451:282542..285175- (Clytia hemisphaerica)
CTTGATTTTCTTTTCTTTTTCAAATTTATAAAATTTTGTTTCATTTTCGA
TGTTAAAAATTAGTTTCACGCTAAAATTTCAAAATTCAAAATAAGAGAAG
AAGTGACATAGTCACGAAGGAAAGAATTTTTTTTGCTCATCCGATTTTCA
TACGTTGAAAGTTGAGGTCAACTGAAAATTACTTTTTTGCAACAGATATG
TTTTTATTGTTTGGCTTTCTTCTATTTCTTTGTCATCAATTTCAAGGTAT
AATTTTTGTTCATAATTCTTAAGGTTTTGAAAAATTAACCAGTGTCTTTC
TAAGATTGGTGAAATTTCACCGGCGCTAAATTTTTAAGGGGAAATTAAAT
TTTGACGTAGAGTAGCTTATTTTATTCATAGTACGACTTCAATCTTTAAA
GTAATAATAAGTTGCCAATTTTGAACACTCCTAAAAAGTTTCATAAATAT
AACTATTATAGTTTTGAAGATATGAATATTCACGTAAAGTTTAAGAATGA
CTTGTTTATAGATTTGACGTCAATCTTTCCTATTTAGGTCCAATAAGATC
TACATTGGTTTTCAAAGCTTCTAAACTTCTAATATTTCATTTAGATACTC
ATGGATTATCCATCAGAGGCCCAAATGACGCACAGCAATTGATAAATTCT
CATGGTGAGAATGATTTGCCAAGTGGTGGAATGTGGGAAACTGCAAAATC
ACAAGCTATGGAGACATATCGTAAAGATTCCCGGCGGGGAATTCCCAAAA
GAGGTCGATCCTCTTTCCTGGCTATTGGAAAGAAAGACGATTCCCTGAGC
CTGGGGTCGAAAATGAAGAAATCTTTGGAATCACCCTCACTTAGTGTTTG
GAGACGAGGAGATTCCCTTCACTCAATCTTAAGGGTAAATCCTTCTCTGG
GGATCTGGAAGCGAGGAGATTCCCTGATGAGAAGATTTGGAAGGAAGAAT
TTTGGAAAAGATAACTCTCGGAGGTCACTGGTGAGGGAAATTGAAAATGA
CGCTTTTGGAATGAATAGGAAAGACGAATTTCCCTCACCAGGTATGTGGG
AAAAAGCAAAATCCCAATATTTTGGAAAGAGAGAATTTAGAAATTCCATC
CTCGGAAAGCATGGGAAAGACGAATTCCCCTCGCCAGCCATGTGGGAGAA
AGCGAAGAACCAATATTTTGGAAAGAGGGATATTAGAAATTCCATCCTTG
GAAAGCATGGGAAAGACGAATTCCCTTCACCAGCCATGTGGGAAAAAGCA
AAGAACCAATATTTTGGCAAAGGAAGATAAACATTACAGATATTCAACAT
ACAATATAATTTAACTATCCAGATTGTCCTGATTGCATTTTAAGTTGAAA
AACATTGAAAATTCTTGCAAGATATTTTACATCTAGTCAGTATCAGCTTT
AACACTTTTAAAAGGGATTAGGCTCAAGTTTATCGGGATCAAATGCCGTC
AAAACAAGCGTAAGTATGAGTGTATCAGTACAATGATTCAAAAATTTGAC
GTCCATTCAACCCTGGCAAACTCTGACCTAGTCCCTTTCATTCAACTTTT
TCGAACGAAGACAGGTGTATTTTTATGATCTTTATGTTTTTTACTTTTCT
TATATAAATTTCACCATAACTATTGAAAAAAGGACCGTGGCACTTAAAGG
TTTAATCCTTAGATCCTTTTTGAGTTATTAAAAAATATATGGTTAACTAT
GTGTAAATTTTTTTTCCAGAATATTAAACCATAAACCATTAATTAGTCAC
CATTCCAGGTTCTAAAAATCATTATTTATATTATGTGCTCATTGGGATTG
AGAAATTGAGCCACATTTCGATAGTTTTTACTTCAGTTAAGTTTCCAATC
AGCCGGACAGTCTTTCTAAATGTCTTTCTAAATCNTCGGGATCAAATGCC
GTCAAAATAAGCGTAAGTATGAGTGTATCAATACAATGACAAAAATTTGA
CGTCCATCCAACCCTGGAAAACTCCGACCTAGTCCCTTTCATTCAACTTT
TTTGAACGAAGACAGGTGTATTTTTATGATCTTTATGTTTTTTACTTTTC
TTATATAAATTTCACCATAACTATTGAAGAAAGGACCGTGGCACTTAAAG
GGTTAATCCTTGAAGCCTTTTTGAGTTATCAAAAAATAAATGGTTAACCA
GAATCAAACATAAACCATTAACCAAGTTCTAACTAGTCACCATTCCAGGT
TTCTCAGTCATCATTTATTTTAAGTGCCTATAGGAATCCGAAAATTGATC
CACATTTTAATAGTTTTTATTCAGTTTAGCTTCGAATTAGTCGGACAATC
TTTCTAAATGTCTTTCTAAATCACCGCTGGATTACTTATTGTTGGCTATG
CATCGGTCCTTCCATTAGCCTGTCACTCTCTGTGGTACTATTTCTGTTTT
TATAGGAGCAATGCTTTATGACAATCTGAAATTTGTCAATTCAAGTTCAT
TTCGGAAGAAATATTCCATTGTCTACTGTTTTGAGTCGCCTGAGTCACTT
GGCCTTCACATCAACCGGCTTCTTGATAACGTTTATCCGGATTGATAGAC
ATACATTGAGGAAATGCAGAATTGATATTAATACATCATTTCGACCGTAG
TCGCGTGGTCAGGCGCGTGCCACTTTTTATCAAC Coding sequence (CDS) from alignment at scaffold_451:282542..285175- >TCONS_00066222 ID=TCONS_00066222|Name=TCONS_00066222|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_451:282542..285175- (Clytia hemisphaerica)
ATACTCATGGATTATCCATCAGAGGCCCAAATGACGCACAGCAATTGATA
AATTCTCATGGTGAGAATGATTTGCCAAGTGGTGGAATGTGGGAAACTGC
AAAATCACAAGCTATGGAGACATATCGTAAAGATTCCCGGCGGGGAATTC
CCAAAAGAGGTCGATCCTCTTTCCTGGCTATTGGAAAGAAAGACGATTCC
CTGAGCCTGGGGTCGAAAATGAAGAAATCTTTGGAATCACCCTCACTTAG
TGTTTGGAGACGAGGAGATTCCCTTCACTCAATCTTAAGGGTAAATCCTT
CTCTGGGGATCTGGAAGCGAGGAGATTCCCTGATGAGAAGATTTGGAAGG
AAGAATTTTGGAAAAGATAACTCTCGGAGGTCACTGGTGAGGGAAATTGA
AAATGACGCTTTTGGAATGAATAGGAAAGACGAATTTCCCTCACCAGGTA
TGTGGGAAAAAGCAAAATCCCAATATTTTGGAAAGAGAGAATTTAGAAAT
TCCATCCTCGGAAAGCATGGGAAAGACGAATTCCCCTCGCCAGCCATGTG
GGAGAAAGCGAAGAACCAATATTTTGGAAAGAGGGATATTAGAAATTCCA
TCCTTGGAAAGCATGGGAAAGACGAATTCCCTTCACCAGCCATGTGGGAA
AAAGCAAAGAACCAATATTTTGGCAAAGGAAGATAAATGTTTTTATTGTT
TGGCTTTCTTCTATTTCTTTGTCATCAATTTCAAGATACTCATGGATTAT
CCATCAGAGGCCCAAATGACGCACAGCAATTGATAAATTCTCATGGTGAG
AATGATTTGCCAAGTGGTGGAATGTGGGAAACTGCAAAATCACAAGCTAT
GGAGACATATCGTAAAGATTCCCGGCGGGGAATTCCCAAAAGAGGTCGAT
CCTCTTTCCTGGCTATTGGAAAGAAAGACGATTCCCTGAGCCTGGGGTCG
AAAATGAAGAAATCTTTGGAATCACCCTCACTTAGTGTTTGGAGACGAGG
AGATTCCCTTCACTCAATCTTAAGGGTAAATCCTTCTCTGGGGATCTGGA
AGCGAGGAGATTCCCTGATGAGAAGATTTGGAAGGAAGAATTTTGGAAAA
GATAACTCTCGGAGGTCACTGGTGAGGGAAATTGAAAATGACGCTTTTGG
AATGAATAGGAAAGACGAATTTCCCTCACCAGGTATGTGGGAAAAAGCAA
AATCCCAATATTTTGGAAAGAGAGAATTTAGAAATTCCATCCTCGGAAAG
CATGGGAAAGACGAATTCCCCTCGCCAGCCATGTGGGAGAAAGCGAAGAA
CCAATATTTTGGAAAGAGGGATATTAGAAATTCCATCCTTGGAAAGCATG
GGAAAGACGAATTCCCTTCACCAGCCATGTGGGAAAAAGCAAAGAACCAA
TATTTTGGCAAAGGAAGATAAATGTTTTTATTGTTTGGCTTTCTTCTATT
TCTTTGTCATCAATTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066222-exon-scaffold_451-1575043694:284930..285175 | TCONS_00066222-exon-scaffold_451-1575043694:284930..285175 | Clytia hemisphaerica | exon |
| TCONS_00066222-exon-scaffold_451-1575043694:282542..284581 | TCONS_00066222-exon-scaffold_451-1575043694:282542..284581 | Clytia hemisphaerica | exon |
| TCONS_00066222-exon-scaffold_451-1510915933:284930..285175 | TCONS_00066222-exon-scaffold_451-1510915933:284930..285175 | Clytia hemisphaerica | exon |
| TCONS_00066222-exon-scaffold_451-1510915933:282542..284581 | TCONS_00066222-exon-scaffold_451-1510915933:282542..284581 | Clytia hemisphaerica | exon |
| TCONS_00066222-exon-scaffold_451-1491911889:284930..285175 | TCONS_00066222-exon-scaffold_451-1491911889:284930..285175 | Clytia hemisphaerica | exon |
| TCONS_00066222-exon-scaffold_451-1491911889:282542..284581 | TCONS_00066222-exon-scaffold_451-1491911889:282542..284581 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:282542..285175 - |
Blast
The following BLAST results are available for this feature:
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