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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066203 ID=TCONS_00066203|Name=TCONS_00066203|organism=Clytia hemisphaerica|type=transcript|length=873bp
TCTAGTTCTTATCCAATCACAACCATTTGGGTGCTGCATCTACCATCTGA
caaccatcataaaaaaTGAAAAGTGAACAAAACAAGAACAATAAACAAGG
ATAAAGGAAAGATAATGGATTTGTTTGAAGACTTGGATGAAAACCGATGG
GAAAATAAAGGCCACCCACCTCTCGATCCTTCCAGCATTGAGGGTTACAC
ATCATATATCGTATTTCAACGGCAAATTGTAGAAGACGCAAAAACTATGA
TATTATATTTGAAGACAGAACAAGGAAGACCGTTGCAAGTCAAACTTTCC
AATTTCAAACCGGACAGAAATCCAATGAAAAGTGTCCGAAATTGTTGTTT
AAAAATAcgtaaaaatgaaattgttggtATCATGATGGACAGAGATTGGG
TGGAAGCAAAATGAAGGACTGAATAGTAGTTGAATGAATACGACTTACTG
GACGAGTGATTACGACTGAATTGATATTCAACTTTCTTTGTATATATGTT
TTTTCTATATTTAATTCcgtgaaagaaaatgaagaatttctATATTTGAG
CGATGGCACGACTCACCattagacacccctgtctcacagccccggtggaa
cttttttttctcagtgggaGCAAAAACTTCCTATTGAAATTCCTTTtctc
aaaggttaaaaaattcagtgcaatttttaaacatagaATTTCGAATGCAG
TTGAAAttctaaggtattttcccaccggagaTGAAATCTTTGTCGATATT
TCCAGTGGAGCTGGgctcccagtgggtctgtgacagaGGGATATAATTAG
AAACAACAATCGGACCCGGTGGAACAACcgttaaagtggggaggctgaag
gctcaaaatgacaTAAAAATTGC Run BLAST on NCBI transcript from alignment at scaffold_451:1375104..1380866+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066203 ID=TCONS_00066203|Name=TCONS_00066203|organism=Clytia hemisphaerica|type=transcript|length=5763bp|location=Sequence derived from alignment at scaffold_451:1375104..1380866+ (Clytia hemisphaerica)
TCTAGTTCTTATCCAATCACAACCATTTGGGTGCTGCATCTACCATCTGA
caaccatcataaaaaagtgagtccaaacttttttgatgttgcaagtattt
aatttttcaaatatacctAGCATGGTCaaatttatccacaaatatacCAT
TTCTCTTTTCATTGAATCTTCTCGACATTTGTTTGTACAAATTATTAACA
TTTGTGATTTATACATAATTTGTATAGTTAAACCTTCATCCAAgattcgt
tgaaaagatattcaggaGTGGATACTTTTGTTCGTGTAGAATATGCGTTG
AATAGAGTCATGGTAAGGTAAGACCTGTTTGGCTCAGACTAGTTTTTAAG
ATGTTTTTCACTAACTTTCAAATCTTTCGCTGATCAATTAATGGGTCCAT
CATAATGCCAAAGCTTGAGGGAAACaatttgatttaaaagttttacAAAT
GTTTTAGCTACAATTGCGGTGAAAGTTACAACTTATTTGGGTCACtcgtt
tttaaaaaatcttgaagttttcaaaaaatgacgatATCGGAAAAGAATTT
TATGGAATCTTTCGTTCAGacaatgaaaattgaaatctcATTCTTCTCAA
AGAGATAGATatcatttaatgttttttttaatctgaGAGAATCCAGACAT
ACGTTTCCTAtcaaaacattctttcaaaTCGGAGATTAAAAATTGAGTCA
GAAAAAAGAGCCGACCCTCTAATTGTCTTTATTATAAAGTTCTGACTAAC
TGGCTAAAAATGCTATTAAGTAATTGATGCTATGCATTTTTTGAACTTCT
GTGAACGTTGGGATTTGTATCGAGGAAGATATTTTGTCAGAGGGAATAGG
CAATTGAGCTTAACGCCCtcagggctagagtagaatctttTCTTACCTTT
CTCaggtaagaaaaagtgaagccacttatcacccatccagaacgcgccta
gaaggcaccacaatcatgacgacggattgttcggttcttttgtttttgag
gactgcattttttaaatctagtgatagattttactttcaatccggagTTT
GCGTAAAAATCACGCGCAAgggttctggatgggaaataagtggcttcatt
ttccatccaggagcctcgagtctagcccttcgcgCCTGGAAGTTGATGGA
ATAATTTTTGCAACgttcgttttgaaaccattaccacgGTGATTAAACCC
ATTGAGTTTTCGATTGTTACTTTTGTCATAGAGCATACTTCTTTTGAACT
CCATTGGAAATCAATTACCATAGAAAAAGCGCAGCTTCCTAGACTGTCGT
CGTTTTGCATAATATCCCAATTCTCATACTAAGATTCTCTTGaattttcc
ggaatctttccgctatttttccaAGATAACCGGCATGAGACTGGAAAGGA
TACTTTCTTAAAGGGACGGAAAGTCTTGTGCTTTAATTACAAAACTACCT
AACTTTCCGAAGTTTCTTTTTCAACTACccgaagtcctggtctttttcca
cTAGAAAAATgacaaaggaatcttagtgcagaaatggaaatcttatgcaa
aacgatGGTAGCTTTCTAATATCAGTTAGCGAATTAAGCAAAAGCCTCCA
TTACATGTCGAACCCATCCTatatatcagattataaaaatacagaaaCTG
TCTTGGTATGCTTTGCTCTTGACGTAATCAGTGAAAATTGACGGCAGTAT
TTTGacaacagattttttgaaattgcgGTTAAGGAgggattttactttaa
aaaaaggtgtTTGGTTTGTTATGATGCCATCGATTGCGTAATACTTTGTG
GTATTTTGCAGAACGTTGTTTAAGAATCTGTGGAATTTCAAGTGTTTGTT
GGGTTTGTGCAGCGGAAAGTGCTTAGGCACTCTTTGTGCAGTGATCTCTA
GCTTAGATTAGGGCCTATTCATACTATGAGAAAGAGTATGTGTCGCATTG
AACTATTGAAAAGGCCAAAGaaatactttcaatttttcgaaaaatggaaa
gTGAATAAGTAACCCTTTTGTTCCAAATTTGCTTGGACTCACTCACTAAA
GGAAGTATGCCCCAAAAAATCTTCCCTAGTGAGAAAATGACCCTGAAACT
TAATAAATATTACACTCGCTTCTTACAGACCTGGTGGAAATCCCTCCAAC
TGAAAAGATTTGCAAAAATATCTTCCCAGTAAAAAATTATAATCTTTGTC
cacgctgaaaataatcaaataaacaaattctCGGTAAAAAATATTGTGCT
TTTTTTCATTGACATTATAAATTTTCTCTGAACGATGGAATTCAAACTCC
CCTGCCATTAAAAGCATGCGCAAATCAATTCCCATTGattttcagtccgt
tatttttacccccgcactggttgaaaaaatcctacAAGGGTCTGTGAGAA
GTCCAATGTCTTGCctatataacgttaaatgaatgtTGCCTGCTGTGGTG
GAATAGCGGAAGAACTCTGGGGATACAATAAATTTTCATTGCGTTCAGAG
AGTCTagtcaaaatttaaaacttttgccGGAACCCGTTTAGCCGGAGTCA
ACGTGTGACTCATGAAATTTTTAAACTAAATGAAGATTATGGACGATTTA
GTTAAAACAACGATTTAATGTGTTTAATTTTTGGAGAGCTAAGCTTTAAA
TTTCGATCCACAAATTGAGCGCTTAATACACATCCATTATCTACTTAGAC
AGTTCCCTCATTGTTAAACACTTTGCTTTTCCATAAGAAAGAATTTGTTT
TAACTTGAAGCAAGATTCAGTCAAAGGGGGATATCAAATGTTTCGccatt
tctaaatatttttgatgGCGAACTGATTTCATTAGGGTCACATCAGAATT
Tgttcaaatgaaattttgatggtgcatacttattgaaaatttcagttttt
aaattttgttttaaacaatgaacattttgaaaaatttcctaaaaaagaat
ttcaaataaaaaatattttggagatAATCAAGTAATGTGTTTTCATATTT
GCTAATGTTTGCAGAACTGGTTCATTCACACACACGCACACGGGAAAAGT
TTTATGATGTCAACGACCATAATACTACTGTATGATCATTTTGTGAGCTG
TAAgttatttaagcaaaaaaaggtttcttgttgaaaacaaatttttcgtt
TCAANTCAGAATttgttaaaatgaaattttgatggtgcatacttattgaa
aatttcagtttttaaattttgttttaaacaatgaacattttgaaaaattt
cctaaaaaagaatttcaaataaaaaatattttggagatAATCAAGTAATG
TGTTTTCATATTTGCTAATGTTTGCAGAACTGGTTCATTCACACACACGC
ACACGGGAAAAGTTTTATGATGTCAACGACCATAATACTACTGTATGATC
ATTTTGTGAGCTGTAAgttatttaagcaaaaaaaggtttcttgttgaaaa
caaatttttcgttTCAAATATTGAGCATTTCTTACTTGGTTGCGACTTGC
TTGATAGCTGTTTGAAGGATTCAGTTAGCTTGGAAGGTTCGCTTATTTTT
GAGCCCCTTCCCAGCAGTTTGTGCGATAGCTTGATCAGGaatttgattct
aaaaaagattttaggcGTAATGCACGAATTTTGGGTGTTTTCATGTGTGT
GATTTTGTCGATTTTCATTTGATCGTGATCAAAGAAAGAGAGAGATAGAA
ACTCGATGCGATAGCTTGACTAGAAGGTAGCCTCTGCCGGAGGGGAGGAC
TCCTTTAGTTTCGAGtcctcgggtaagttatggcatgtctcaaaaacctg
aaaattaccataatttttgaaggccattagctggcagaaaatggggaaac
caatgatttgctacgaagggtatcatgatgaagtttcgctttaggggtgt
tacctaattgtttacgcccttattttcgcgaaaaaccgcaaaaactaaaa
aatgatgacgtcagcaaaacttgtttttcaaataactccagtttggctaa
agatagaagcatgaaatttggactgaagttgcatatcattaaaaggatca
ttttgcaaaaaagtttttttgaaattttgctgacatcagcactttattgc
aaaatttcgtattttgttgatttctgctgacgaaagcaaaatttcgaaaa
aaaaaattttgcaaaatgattcttttaatgatattcaacgttggtccaaa
tttcatgtttctaccaTTATCCAAACTGGAGATATTCAAGAAACAAGTTT
TGCTAACGTCAGCACTGAGTCGTTACGCAAATTGCCTGACGGGTCCGTGC
AGTGGTTAAAAGTATGTTTTCAAGATAGCagaaatacactgtaagggtga
aaattttagaaaatcaagaaaatttctaatttttgctcgaaaactTCGAT
TTTTTAGCACtgagaaagttgaaaatttaagaaaaaatttactGTACCGA
TTACTGTACTGATGGTGCGATTCTAAAAAGCCGCGCATATCTTCAGTCTA
AAGCAATTACAATTTTGACTCGTGTTTCTTATGTAGTGAAAAGTGAACAA
AACAAGAACAATAAACAAGGATAAAGGAAAGATAATGGATTTGTTTGAAG
ACTTGGATGAAAACCGATGGGAAAATAAAGGCCACCCACCTCTCGATCCT
TCCAGCATTGGTAAGATTTTCCATTCAAAATCATGattattaaaaagtga
aatggaCTATTTAAGAACCCATAACCCCTGTCAGAGCTCTTTTATCTACT
TCCCAAAGCGAAATAGACTATTTAAGAGCCAATGACCCCTTGTTAGACAT
TGGTAAGCTACTTAATCTCTTATAATTGTTATTTGGTCATTGAAAAGCTT
AAAGGGTTCACTCGAAAGTGAAATAGAAAATATAAGAGCAAATGACCCCT
TGTTAAACATTAGTAAGCTTTTTAATCTCTTTTAAAGCGTCATTTGGTTA
TTGAAAAAGTTGAGGGGTTCGATTTTTGTGGACACACTGTGTATGCAGCA
TAAGCTTAAAAATATTCTGAAATAGAACCTCTCTCTCCTCTCTCACTGAC
CCTTTATAAACACTATGTATCTCTTTTCAGAGGGTTACACATCATATATC
GTATTTCAACGGCAAATTGTAGAAGACGCAAAAACTATGATATTATATTT
GAAGACAGAACAAGGAAGACCGTTGCAAGTCAAACTTTCCAATTTCAAAC
CGGACAGAAATCCAATGAAAAGTGTCCGAAATTGTTGTTTAAAAATAcgt
aaaaatgaaattgttggtATCATGATGGACAGAGATTGGGTGGAAGCAAA
ATGAAGGACTGAATAGTAGTTGAATGAATACGACTTACTGGACGAGTGAT
TACGACTGAATTGATATTCAACTTTCTTTGTATATATGTTTTTTCTATAT
TTAATTCcgtgaaagaaaatgaagaatttctATATTTGAGCGATGGCACG
ACTCACCattagacacccctgtctcacagccccggtggaacttttttttc
tcagtgggaGCAAAAACTTCCTATTGAAATTCCTTTtctcaaaggttaaa
aaattcagtgcaatttttaaacatagaATTTCGAATGCAGTTGAAAttct
aaggtattttcccaccggagaTGAAATCTTTGTCGATATTTCCAGTGGAG
CTGGgctcccagtgggtctgtgacagaGGGATATAATTAGAAACAACAAT
CGGACCCGGTGGAACAACcgttaaagtggggaggctgaaggctcaaaatg
acaTAAAAATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066203-exon-scaffold_451-1491911889:1375104..1375169 | TCONS_00066203-exon-scaffold_451-1491911889:1375104..1375169 | Clytia hemisphaerica | exon |
| TCONS_00066203-exon-scaffold_451-1510915933:1375104..1375169 | TCONS_00066203-exon-scaffold_451-1510915933:1375104..1375169 | Clytia hemisphaerica | exon |
| TCONS_00066203-exon-scaffold_451-1575043694:1375104..1375169 | TCONS_00066203-exon-scaffold_451-1575043694:1375104..1375169 | Clytia hemisphaerica | exon |
| TCONS_00066203-exon-scaffold_451-1491911889:1379640..1379763 | TCONS_00066203-exon-scaffold_451-1491911889:1379640..1379763 | Clytia hemisphaerica | exon |
| TCONS_00066203-exon-scaffold_451-1510915933:1379640..1379763 | TCONS_00066203-exon-scaffold_451-1510915933:1379640..1379763 | Clytia hemisphaerica | exon |
| TCONS_00066203-exon-scaffold_451-1575043694:1379640..1379763 | TCONS_00066203-exon-scaffold_451-1575043694:1379640..1379763 | Clytia hemisphaerica | exon |
| TCONS_00066203-exon-scaffold_451-1491911889:1380184..1380866 | TCONS_00066203-exon-scaffold_451-1491911889:1380184..1380866 | Clytia hemisphaerica | exon |
| TCONS_00066203-exon-scaffold_451-1510915933:1380184..1380866 | TCONS_00066203-exon-scaffold_451-1510915933:1380184..1380866 | Clytia hemisphaerica | exon |
| TCONS_00066203-exon-scaffold_451-1575043694:1380184..1380866 | TCONS_00066203-exon-scaffold_451-1575043694:1380184..1380866 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1375104..1380866 + |
Blast
The following BLAST results are available for this feature:
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