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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066201 ID=TCONS_00066201|Name=TCONS_00066201|organism=Clytia hemisphaerica|type=transcript|length=662bp
tttaaattctttatACCGTGAGGTAGCGACAAGGGAGGTTCTGAATTACC
ATCAACACCAGTAGATACAACCAAAACTAAACCAGATTCAAAAACACCAG
AAATGTCTTCAACCATTGAACCTCGATCACAATCTGACGTCAAACCTGCC
AACAAACCAAGAGGTTTTGGAAGCATCTTGAGTTTCAGAAAGAAGAAAAC
TTACACGTTGAATGACAGAGAAGCGGATGATTTGAAAATCGTTTCACACC
CTGATAACGAAgggaCCCAAACTTCAGATGAAGAAGTAAACGCAGAATCT
TTGCGAGAACCTGaagATCTTATCGAACCAGAGATTTCAACCAACGTAGA
ATCATCTCCTGACATCGAAGaaTATTCCGAACGGTTTTCTTAACCAAAAA
TTAACCTGGATCTGGTTGAAATGTGCCGGACGTCGATGGTTGGACGGGGA
GACGTCGTGACGTGGTTTGAAGTGTTTTGACGTAACGTATACCAACGTAT
ACATTGACGTGACGTGACGCATACCAACGCATACATTGATTTGATGTAAC
GCATACCAACGTATACATTGACTTGACGTGACGTGACGCATACCAAAGCA
TACATTGATTTGACGTAACGCATACCAACGTATACATTGACTTGACGTGA
CGTGACGCATAC Run BLAST on NCBI transcript from alignment at scaffold_451:1338720..1347735+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066201 ID=TCONS_00066201|Name=TCONS_00066201|organism=Clytia hemisphaerica|type=transcript|length=9016bp|location=Sequence derived from alignment at scaffold_451:1338720..1347735+ (Clytia hemisphaerica)
tttaaattctttatACCGTGAGGTAGCGACAAGGGAGGTAAAACCATTTt
ctactttcatttttattttcatcatgCGTGTTTCCGTGGCTTGCGTGCGA
CTCTGTTTTCGAAAGCTTTGGTTCGCACGCCTTATCTTGGCACGGTTCAT
AATTTCTTTCTCTTGTATTAGATTGATCGCATTATTGAACATTGCTTTCA
ATTTAATTGCATGCACGTTTATTGCGCAACTAATTCTTACGTCATTGAAT
TAATCTTCCGATTTCTTTTTAGCCAGTTTTTACGTGCTATTTCTCCTGCA
GCAGAGGCTGTTCAGTTtttgatttgtctagatcctgactgactgagaac
AATGGTTTTATCAGTGCTTTTATCGTTTTCAATCTTGCAGGTCCAAAATT
ACGGGTAGCTTTTCTCGCTCAACAGCATATACTCGCTATATTCTAAACTT
TGGCGAGATCAATTTGATGAGTTATTTTACGGCCCGACCGAACCTGAAAT
TGTAAAAATCGAAATCAAAATAAGATTAATTTTGCtaatacatttttatt
ttcatttctttacaGACTCtcaaatgttcaaaattttggtagttttttcg
CAAggatttgagaattttatgttcaatttttcattttatccacgAGTTCG
ActttttttcgtatttttattttctatttctcaTTTTGGTCaggatgtag
tagtttttgctgccatTTTGGTTGATTTTACAGGTGAaattcacttttat
tttttcgccgcccgactgaccctcttttttgggtagcccgtaaaacaaca
aattaatatGGTCTCGCCTTAACGGCTTTTCGTAGACAAGTTAATGATTC
ATCCTTCTGAAATGCGTTGATTTCCAAGACCAGCAGATTTGTATATGGAT
AATATCAATTTACTACTGATCTAGCAAAGATCCACGCTACCTAATCCTTC
TTTGTTTATACGGAGATTCGGGAAAATTGgggataaaaaattatttttca
gtaatagaccttttttgaaaaattactttttagCTGCCTTGTTTTTACCC
CGATAGTGAACATTTTTTTGGCGAGGAAGAATTTTTTACAAACCATTCAT
CATCACGTTAAATACTCGTTTCTTAGAGAAATTGTGAAATAAATTCTTCC
GTTAAAGAAACAATTTTTGGTGTATTTATTTTGTGTTGCTTCCTTTAAAT
cgaaaatttactttttataatgagTTTTTGATAGGGTGATAACAATTTAT
AgatatttagttttttttccgAATCGCCAGTTAATTTCACAAGGAAATAA
AAATTCTCTCGTCCATGAAATCAACTGTCAACTTATAATCTCAATGTTGT
CGCAATGTCGTTTTTGCCGAAAAGATTCGTTAAATCTTGGGTTTAGTTGA
CAGTTGACAGAATTAAGATTCGTTTGATAGTACGACTACActacaaacta
tataagaacataaggctcaAAAGaccaaaataataagaacatttaaaata
aAGGGATTATGTAACCTACGTTATTGATGGACGCCAGTGAATTTTATCGA
AGCTGATGATACGCCGGGATTGTTCCAAGACTTTATGAACTCTAAAACAA
ACATTCATTTTCTTAGGAAACTTGCTAAATGGTAAattaaagaacttttt
taggcttgaaactcgaaaagttaagaacattcgataATATTTGGATGTCT
TATAAAACGTGTATACTACACACTCCACTTCGATGACATAACTTAAAATA
GCTGAATATTCTATCGATCATTTTGATTGACATCAttctgtcatttattt
gagCAATATTGCAAAGCTGTTACATTGATTTATTGTCTCTATAGCTTATT
CCGTCTTATTTACCATTAAGATATACGGTAAACGAAAAATTTCTCGGTCG
ATTTATCGAGAGACTTTAGTTCGATTTATTTGGTTGATATTTCTGCCTTC
AAAAGTTGAATCTTCGTCtaaaattcattaaattctagtttttttgttta
ctgtTCAGTCCTTAAATCGAGGATACGTCACTATCTCGTATTCAAACCGA
AATTTTCAGTCATTgttaaaattttatataaatCTCGGGTATTTGTGTTG
CATTGTTGCTATATtgatctctttttttttgtcgtttttcagccgaaaat
ttttctctaaattttgttcaacttttaacattttttcgtTTAAATCAATA
TCTATTtacaatatttatatttatatttctCAATTCTAAGCCGAGCATTA
AAAGTTCTATTTTCGTTTCAACGATTCTTATTTAGTCGTTGTTCGGTCGG
TCTGCCGAAAATTCTGGCTAGATCCGTTTAATCAGCCTAGTGGACCCTCA
TTAAAACTGTCGTTAAAAACAAGGAGTAAACTTTGTCTAATCGcatcttc
aaattttcacataGTATGTCTAAGCCgagtatttaatttttattttcgtt
acGAATGTTTAGTCGTTACTCGGTCGGTCAGCCGAGAATTCTCGGTTTAT
TATCGTTACATTGCAAATATATCGGTGGTAACCAATGCGAGTAATTACAA
AAGAATCTTTCCTCGACAGCTATAAAAAACGCCTCCGCGTGGCAATCAAT
GAACACATTCTCGATCGCACTTGTTCGTCAATATTATTGAGAGAGCTTAG
AATTGGTCTGCACGTCTTTTGGAAATTATATTTTCGAGTACACACACGTT
GGCACACGTTGTTATTTTccattgttattatttttgagaagGTATATCCT
AAACAATGCCACGTTGTAatcaatatatatttttctacaCACATTTTATT
CCATACGTTTTTCATTGGAAAGACTCAACTTGGACTTAACCAGTTCAATC
AACTAAGGATTCATTCAACCTGGGATGTTTCCATCCATTCATCATCTACC
CTTattgtctttgaaaacttaatttcatatttttgaccATCAATTTGATT
TGGTTTAGATTTTGCAGTACCAGAAaacttaatttcaatttttggatcAA
TTTGATTTCGTTTTAGGTTCTGAATTACCATCAACACCAGTAGATACAAC
CAAAACTAAACCAGATTCAAAAACACCAGAAATGTCTTCAACCATTGAAC
CTCGATCACAATCTGACGTCAAACCTGCCAACAAACCAAGAGGTTTTGGA
AGCATCTTGAGTTTCAGAAAGAAGAAAACTTACACGTTGAATGACAGAGA
AGCGGATGATTTGAAAATCGTTTCACACCCTGATAACGAAggtatttaaa
ggttttatttttatataaagtgttcccgtttcatatcagacacatatttc
atatcaggacagtgtcttgctattgttatattatgctgatataagcaaaa
aaaaagttttcttttcctctttctgaccaatcttgctccacatacgtgtc
aatctaatgtaaaaaagcttgtaaataaaaattgatgagtaagcaaacga
tatcactcttatttaaaaataaaagctttAATAACTATaccaaaatacca
aattttaagaaacaagGTTTTTAATCTAAGAAATTAGAAATCACTTAAGA
CACCCCCTACTCACAGATCCGGTAGGATATTTTCCGTCAGTGGGGGttaa
aataacggactgaaaattgatggggattgatatttccatatttactatga
ctggggatttatattctattgttttcaagtcagaaaattcagtagggGCG
GGGAAAGTAGCATAACATTTTTGCAGTAAGGATTGATTTTTCAGGaggaa
aaaattagagtataattatCCACCGGCgacgatattttggcaaatttttt
cagtgggaaggggtcttAAGTTCCCCCTTTAAAAGGGATATTAATGCTAT
TCTTCAGATTTTTGTGAAGTTAAATTTTGCCAATAATGCTTACCTTATCC
GGAACCAGAGccatattttatttctttatgtTAACCGATttgtaaaatag
aaaaacagcgAGAACACTATGTTTGAAAATTCTAGTTTGTCTGAAGATGA
AAATTTGGTCGAAACCAAATTAGTTTTTTCCGTTTGCGAGAAAATTAACT
TGcatgaaaaaatctaatttttggTTACTTTCTTATGTAATAGTGCATGC
TTTTCCTTTTCCATTGATCTTGCAATTTCTGTAACTGAGATACAACATGA
CAACACTGCTGCTTCGGAAGTGAGAAGAAGGCCAATAttttcatcttcct
ttattcttttgaaaatggaGTAAATAACAGACAAATACAGTAAAGAACAC
ACACCCTcggtatttttgaaatttcatcaaagaaCATAAAAGCActcttt
ctatcattctatgTTAGTGAAAAATTAGTCTCTGGTGAATTCTAATCTTG
AGATTAGAAAAATACGCTTGTTCTTCTTAATCTCACGCTcttagatacac
gttttttttataagaacaaattatataagaacataaaatgttaaaaacaa
gttaagaaacattttaaggctttgcggaccttAACACACCAAATTTCCTA
GGAAactggacaaaaatactcaaaaaatggcgaaaacaaGAACATGTTTA
GAACCTTtgtaagcttaaaactcaaaaaaattaagaagatgttcttatca
aaaaactCGTATGTGTGATGTAACGTGATCTACTCCCACTCACCGTGTCC
TGTCTTTGTCCGTTGTTTACTCCAATTTTCAAATGAATAAAGAAAGATGA
AAATATTGGCCTTCTTCTCACTTCCGAAGCAGCAGTGTTGTCATGTTGTA
TCTCAGTTACAGAAATTGTAAGATCAATGGAAAAGgaaaagttttcatta
tttgCTATTatgtataaatattttttaattcgtcGCATTGATTGTAAATG
GATATCGGAAAAAACAAATCtggttggaataaaaaaaagatttttatatc
AAGACAATGCAGTCATTGTCTGCAGTTATTGTCTGCATATCTTTTCATGA
TAATTCAAATCCAAAACTGATCAAAAGTTTCCTAATCAATTGCTAATTTA
CATATCGTTTTTAGTATAGttctttgagagactttcgaggatTTAAAAAA
GGACCCTTATGCAAATACCTGACACCCATTTTGCTAAAGTACCAAGTGCC
CCTAGAGGAAACCAAATACGCAAGCCCTTCTTATTCCTGACATGAAACAT
TGCAATGAGCCCAGAACACGAAATTGTTGACCTTTTGTAGTTTTCCACTT
AATACGTCaagtttttcataatttcagTGATATTTTCAAGGGGAGGGGGA
GGGGAGAATTTAGgaagcccagctggcacacaacgtcttttcatcgttta
tctaacgttcacgacgtccatataacgctagtttaacgttgaaacaacgt
tgtgtgccatctGGGAAACATACAACGAGTATAGGCAAATAAAAGCTCAT
AAACCTGCAAGATGCAGGCCATTTCACTTAAAGAATAACTTTCCATCttc
actttaattttaaatGTGGCGGTTTAATCCTTCTGATGTGTTTTGGTTGC
CACGTCAGcagattagaaaaaattaatttccaaACTATCGAAAAACAATT
ACAGACTGTTTTAGatcattaaaaatgtttaaataaAAACTAACAAGCTA
AACACGGAAAAAATTCTCACAAATTGCTTTTAAATGTTTGTGTCGCTATC
AGCTttcatttatttaattttctaaaatcagaggacatttcttaattttt
aatctttaaggAAATCTTTCTCATCTGCTTATTTATCACGAAATTTTTCC
TTTATTGCAGGAGCGATGAGTTTCTTGTTTCAAGCAAACTTTGTTGTTGT
TATGGTCCTTTTTAGCTTTCTTCGGTGCGATTAACataatatacgttttt
tttataagaacatccaaaatctttgaaacctaaaaatgttcttaactttt
tgagtttgaagtctgaaaatgttcctaacttgtCCATTTTTGGGGCATTT
TTGcccatttccctaagaaatcgggtgttttagagtccacaaaactttaa
attgttcttaatattttggtcatcgaagccttgtgttcttacaaaaaacg
tgtattgctaattaaattgttatattgtgctgacataagcaaaaaaggtt
tttgttttcctctttctgaccaatcttgctccacattcgtgtcaattcaa
tgtgaaaaagcttgtaaatcaaaattgatgagtaagcagaCGATATCACt
ctattcaaaaacaaaacctttaaattatggattttaaatttaaagcaCAC
GCACTCAAGAAtgaggaaaaataattttaaacccCCTTAAATAAAAATGT
GATGATGAATAAATGGTTTACTAATCTCCTGTGAGATTGTTTAAATCCTG
TGAGAAATattattgttttatttcaatCATGCAGGATTAACAAAAACCAT
AATTGATCATTACATTCGATCCGAGAAGGAagaagtgcaattttttcctc
ttttgaaataattttttcatttccaaCTATCTGGAAATAACTATTTCAGG
ACATTCATCAAAAGGAAGgtgtaattttattttattttttttcagggaCC
CAAACTTCAGATGAAGAAGTAAACGCAGAATCTTTGCGAGAACCTGaagg
tatatattttttctgtcggctttgTTTTCTTAcgataaaaaaaacttgta
ctaAATGCGACTTGATGGTactgttgtttttgttgtctCCAATTccattt
catcgaataagggagcgaaTCGAATCGTAGAATGTCGAACTAGAGAGTGT
CGACTGTAATTTATAATTAtatgaaatgaaaatgtttatttCGGCCAGTT
GAAAGGAAATCCACCCTTTGTAATCTCACAAACACAATTATAATAATCCG
GCTAATTTTGGCTCGTTTTGTTGCTAGACGGTCTCTCACTGATTAAATTT
TAATATCTAAATCGGCGGAAATAATTTCCCATTTTCCTAAGCTGAAATAA
TCATTTAATACGTTAGCGTCCGACTACGAGTATACTGGTTGTACAGTAGA
GAGGTAAAAACACCGGTAGTATACCTTCAAAGGTCCATAACTTTTTATAC
AAAACCTTTTATGTTGCATTTTTTAAATCTACGTCAATTTGTATACAATT
TGAAGGTATTTGATGCTAAACTGAGGccattagagcctttgaaactcatt
tgatttaaaaaatacgAACGTCCCCGATTTTCATTTTAAGAAAGTTGAAA
ACTAGTAAAATTTTAATAAGAAGCCGAGGCGGCCCAGCAAGCCGTTtctt
ccgaaaaaaatttcaatcgaCAAACCGCGGGCGGCttctttaaaaactta
aaaacagaAAATACAGCGACATGAAAGGTCCGATGCTGAGCCGAATATTG
ATTACTTTATatgtaatacaccttttcgaccgtagctgctaattgccgcg
tgggcatttttgtccattttaccaccctaaaaccgtcccagtcttttttt
cgcgcaTAAAGACAATAAAAATAAGTGTagaaaggattggatcgagttta
gggtggtaaattaattaataaagtggcacgcgcctgaccgcgtgactacg
atcgaaaaggtgtacTGTTTATACGTTGAATTTTATCTTTTCACAGATCT
TATCGAACCAGAGATTTCAACCAACGTAGAATCATCTCCTGACATCGAAG
GTGAGAATCcttcaattgtttttgttttttcttcattataattttttttc
atgaaaaccGAGATTTTCAATTCCTACGTCTAAAAATACAGTAAAAAAGC
AGCAAAGTTACCAGATTGCACTTCGATCTACACTTTATTGTTTTACATTG
gtaaaatttcagcctcaatctAAATCGACATTTCTAAATGACCCTTACAA
AACACATCTGCAGGGTGTccagaaaaaaagtatcgagttgcaccacttct
atagaaagaaagttcttgtgtgtgtttcactagatttgcaatgtttatca
aagtttctttctgtgtcatattaattgtcatgagacatcttttatgaata
acttttacaaaaaacaattctcaataacttaaacgcagtgccgtagcaac
caataattttttcaaaaatggttattctgcaaaatgcaaagtttttcttt
tttaatttgtcataattgtcacaattgagtgcactttcaagcaatctaga
gctcaaattttcaaaatttcccccctcgggccaaaccatggttggccctc
gcggtgtcactaaacttcagccccccccccaatatggaaatgcttcctac
ggcactgcttaaacgtcatgaaaattgtaaagaaaattaattatttttaa
tcacAAAAACTATTATTGTGTTTGTGtattatattttcttacattttgtt
aaacacacgcagCAACCTtttactcagaatcatgttcgaactcgatactt
cctttccggacaccctgtaattCGATCAAAAACTAAATATGCGTTATTGC
ATTTGCAATTATCCATAAAATAATCCTGTCTGTTTTTTCAAGAATCTTCT
GGGAGTAGAAACCCTTAGAGGAGTGAGGGTATTTTATGACAAATTCCCAA
TCTGAAGCTACGGATAAAAATGGCTTacgaaaaaaaagtcaaaagtgtTT
ATATATTCAACGAAAGTTTTTTGGTATAACTTACTTCAACTTCAACTCAA
AAACTATTTCTGCAACACAAATTTTACCACATACACACATACATGACATA
AATTTAAcatatttacaaatttagaaTATTCCGAACGGTTTTCTTAACCA
AAAATTAACCTGGATCTGGTTGAAATGTGCCGGACGTCGATGGTTGGACG
GGGAGACGTCGTGACGTGGTTTGAAGTGTTTTGACGTAACGTATACCAAC
GTATACATTGACGTGACGTGACGCATACCAACGCATACATTGATTTGATG
TAACGCATACCAACGTATACATTGACTTGACGTGACGTGACGCATACCAA
AGCATACATTGATTTGACGTAACGCATACCAACGTATACATTGACTTGAC
GTGACGTGACGCATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066201-exon-scaffold_451-1491911889:1338720..1338756 | TCONS_00066201-exon-scaffold_451-1491911889:1338720..1338756 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1510915933:1338720..1338756 | TCONS_00066201-exon-scaffold_451-1510915933:1338720..1338756 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1575043694:1338720..1338756 | TCONS_00066201-exon-scaffold_451-1575043694:1338720..1338756 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1491911889:1341736..1341960 | TCONS_00066201-exon-scaffold_451-1491911889:1341736..1341960 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1510915933:1341736..1341960 | TCONS_00066201-exon-scaffold_451-1510915933:1341736..1341960 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1575043694:1341736..1341960 | TCONS_00066201-exon-scaffold_451-1575043694:1341736..1341960 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1491911889:1345265..1345318 | TCONS_00066201-exon-scaffold_451-1491911889:1345265..1345318 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1510915933:1345265..1345318 | TCONS_00066201-exon-scaffold_451-1510915933:1345265..1345318 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1575043694:1345265..1345318 | TCONS_00066201-exon-scaffold_451-1575043694:1345265..1345318 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1491911889:1346316..1346369 | TCONS_00066201-exon-scaffold_451-1491911889:1346316..1346369 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1510915933:1346316..1346369 | TCONS_00066201-exon-scaffold_451-1510915933:1346316..1346369 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1575043694:1346316..1346369 | TCONS_00066201-exon-scaffold_451-1575043694:1346316..1346369 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1491911889:1347444..1347735 | TCONS_00066201-exon-scaffold_451-1491911889:1347444..1347735 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1510915933:1347444..1347735 | TCONS_00066201-exon-scaffold_451-1510915933:1347444..1347735 | Clytia hemisphaerica | exon |
| TCONS_00066201-exon-scaffold_451-1575043694:1347444..1347735 | TCONS_00066201-exon-scaffold_451-1575043694:1347444..1347735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1338720..1347735 + |
Blast
The following BLAST results are available for this feature:
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