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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066200 ID=TCONS_00066200|Name=TCONS_00066200|organism=Clytia hemisphaerica|type=transcript|length=3194bpRun BLAST on NCBI transcript from alignment at scaffold_451:1338718..1372827+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066200 ID=TCONS_00066200|Name=TCONS_00066200|organism=Clytia hemisphaerica|type=transcript|length=34110bp|location=Sequence derived from alignment at scaffold_451:1338718..1372827+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066200 vs. Swiss-Prot (Human)
Match: LOXH1 (Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens GN=LOXHD1 PE=2 SV=3) HSP 1 Score: 99.3673 bits (246), Expect = 8.450e-21 Identity = 78/276 (28.26%), Postives = 130/276 (47.10%), Query Frame = 3
Query: 378 ETTEYLVHIITGDKRGAGTDADVFIVFIGTKGESDEYKLKNSVTKHKSFFERDQTDSFEVSVSNDIGHLRKIRIRHNNKGGLAPWYLESVILEDIETESKKHMSAKIWLKKKKS------------LQVELDIPGNSYQLTIYTSDIENAGLDGKIYLRLLGQDAETSEKVVLPGNEVGSIXXXXXXXXELFNRGAEDVFVRKFQDVG-LIERIEVGLXXXXXXXXXXXXXXXXXLLSWHLDKIVLVRLFTEDEAHASVPVNLCFTCNCWFSTNKN 1166
++T + V I TG K+ AGTDA+VFI GT+ ++ LK+S T FERD + F V + D+G L K+R+ H+N G W+++ V ++ WL K + LQ L P Y++T+YTSD+ AG D I++ + G DA +++ L N+ ++ K+ F R + F+ + +DVG +IE+I +G WH + + RL + + + L F C+ W +T+++
Sbjct: 895 KSTTFSVTIKTGVKKNAGTDANVFITLFGTQDDTGMTLLKSSKTNSDK-FERDSIEIFTVE-TLDLGDLWKVRLGHDNTGKAPGWFVDWVEVDAPSLGKCMTFPCGRWLAKNEDDGSIIRDLFHAELQTRLYTPFVPYEITLYTSDVFAAGTDANIFIIIYGCDAVCTQQKYLCTNK--------REQKQFFERKSASRFIVELEDVGEIIEKIRIGHNNTGMNP------------GWHCSHVDIRRLLPDKDGAET----LTFPCDRWLATSED 1144 HSP 2 Score: 88.1965 bits (217), Expect = 1.882e-17 Identity = 66/219 (30.14%), Postives = 112/219 (51.14%), Query Frame = 3
Query: 372 VIETTEYLVHIITGDKRGAGTDADVFIVFIGTKGESDEYKLKNSVTKHKSFFERDQTDSFEVSVSNDIGHLRKIRIRHNNKGGLAPWYLESVIL-EDIETESKK-HMSAKIWLKKKK---SLQVELDIPGNS--------YQLTIYTSDIENAGLDGKIYLRLLGQDAETSEKVVLPGNEVGSIXXXXXXXXELFNRGAEDVFVRKFQDVGLIERIEVG 989
++ Y V + TG+ GAGTDA+V++ G G++ E L N + FE+ D F + S + ++R++RIRH+ KG + WYL+ V++ E+ + ES WL K K L EL +P +S Y +++ T D+ A D ++Y++L G ++T ++V+L + LK+ F RG D F + ++G I R+ +G
Sbjct: 271 IMGMARYHVTVCTGELEGAGTDANVYLCLFGDVGDTGERLLYNC-RNNTDLFEKGNADEFTIE-SVTMRNVRRVRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEFPCLRWLDKDKDDGQLVREL-LPSDSSATLKNFRYHISLKTGDVSGASTDSRVYIKLYGDKSDTIKQVLLVSDN---------NLKDYFERGRVDEFTLETLNIGNINRLVIG 477 HSP 3 Score: 85.8853 bits (211), Expect = 1.015e-16 Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 3
Query: 369 EVIETTEYLVHIITGDKRGAGTDADVFIVFIGTKGESDEYKLKNSVTKHKSFFERDQTDSFEVSVSNDIGHLRKIRIRHNNKGGLAPWYLESVILEDIETESKKHMSAKIWLKK 710
E++E T Y V + T D GAGTDA+VFI+ G G+S LK S +K FER+ TD+F +GHL K+R+ H+NKG W+L V ++D + H WL K
Sbjct: 1602 EMMEWTSYTVAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQSANWNK--FERNNTDTFNFPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKDNSRDETFHFQCDCWLSK 1713 HSP 4 Score: 82.8037 bits (203), Expect = 8.566e-16 Identity = 61/271 (22.51%), Postives = 120/271 (44.28%), Query Frame = 3
Query: 390 YLVHIITGDKRGAGTDADVFIVFIGTKGESDEYKLKNSVTKHKSFFERDQTDSFEVSVSNDIGHLRKIRIRHNNKGGLAPWYLESVILEDIETESKKHMSAKIWLKKKKS---LQVEL---------DIPGNSYQLTIYTSDIENAGLDGKIYLRLLGQDAETSEKVVLPGNEVGSIXXXXXXXXELFNRGAEDVFVRKFQDVGLIERIEVGLXXXXXXXXXXXXXXXXXLLSWHLDKIVLVRLFTEDEAHASVPVNLCFTCNCWFSTNKN 1166
Y+V + TGD RGAGT + +++V G +G + K + F+R +TD F + ++ + L ++ + H N G W+ E V++ T ++ WL +KK+ ++ +L + + L ++T+D++ AG + I++++ GQ T E ++ P N + F G + F + D+G +I V ++ + WHL+++ L+ +D+ + F CN W N++
Sbjct: 20 YIVTVFTGDVRGAGTKSKIYLVMYGARGNKNSGK----IFLEGGVFDRGRTDIFHIELAVLLSPLSRVSVGHGNVGVNRGWFCEKVVILCPFTGIQQTFPCSNWLDEKKADGLIERQLYEMVSLRKKRLKKFPWSLWVWTTDLKKAGTNSPIFIQIYGQKGRTDEILLNPNN-------------KWFKPGIIEKFRIELPDLGRFYKIRVWHDKRSSGS------------GWHLERMTLMNTLNKDKYN--------FNCNRWLDANED 253 The following BLAST results are available for this feature:
BLAST of TCONS_00066200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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