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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066185 ID=TCONS_00066185|Name=TCONS_00066185|organism=Clytia hemisphaerica|type=transcript|length=1833bp
CATAAGTACAGCTAtaatatttttgttgatttatttttgaaagtaaaaTG
GCTAATCAAGTGAATATTGCAGGTATCGCTAATCAAACGAATATGGCAGG
TATCATGCAGAAGGTTTTGtctttgaaaccattaccaatcGATCCAACCA
GATGTACTCCCAACAAATCGTTGTATCAGCAGATTCTCAATAACAGTCAA
GCCACGTCAGAAAGACAAGCAAAACAGTTCAACTTGGGGAATTCGCACTG
TACAGCAAACCCTATGCATGCAGCCGACTTCGTTCTTGAAAGGGAGTATG
GAGACAGTTCTCTCTTTGTTCAAGGTGAACGCACCAGTGTTTTCATACCA
CCCACGTTTGTTTCGAATCAATACAAAAAGTCTTCTTTTGCTATCCTTAa
ttatgacgtcaaaaaagacaTTGACAGACTTTTGGTTAATTTGAAACAAC
ATTCACCAACGTATTGGCTGACCAAAGAATTGGAAACTTTTATGCAAACA
CAAAACAATGCTGATTCTATCGACAAGAAGGCGTTTGGGAAATGGATTCT
TAACCTTCAAATCATGTATCTGGCAATTAGTGAACTGAAAACTGACCAAG
TGACCCTACCACAAACCACTTTGGATATAGGAGTTTTCGTTCAAGGATGT
CTTGCCGTGCTCTTTCCTACATCACCTCTGGGAACACTTCTTCAACAAAA
TCTCTTCaccaaaaacctcaaaaaactGATCAAGCAAATGATTGAAGAAA
CACCAAGCAAAGATTCAAACCTTGGATGGCTATTCACTTTGGAACTGTCA
GAAGTTGGTGAAAAGCTGGAACACTGGTTATATGACCAGCTTCTACCATT
GAAAGATGACAATCTCCAAAACACAGTCGTTCTTTCTTCACTCATTTTTC
TGACAAATGTGcaaaaaaaaatgcataaaGAGACAGATTTTCTAATCATA
TCTTGGGAACGGAAGCTTATCATTTCAATCGAGCTGAAAAGAACAATCGC
AGATGATAAAGTCTTCAAGCAGTTGGAATCAAACCATCGGGTTTTCGAGG
AAAGATTAGGGGACCAATTGATTTCAGGTTGGACGTATTTTCCGGTGGTC
GGCGTGGAGAACGACAACCTTTCAGTAAAAAGTCAGCATTATATCACAAT
CCAAACTGAAATAAAACAATGGCTGACCAGTGTCTTCAAAAGGTTCCCGA
CAATTCCAGCAGTGTCCATACCGAATCCATTGGACGAAGCTAAGAAGCTA
CTCAAAATCCTGGTCTTTGCCATTCACGTTTCGAAAAAAGATCAAATTGC
ACATATTACTAGCTCAACATGGGTCGAATACACCAGCAACGCTATCGAAA
ATGTTTCAACTAGCCACAACATTTTATTCTACTCCAACCAACAGATGGCA
ATCATGAACAACGATGAACCAAGCTACAGGAGAGTGGTCATTAGTGGGCC
TTTTGGTGTTGGAAAATCAATCTTACTTACACAGAAGGCCATACAATTAA
ACAAACGACCTGAATACAATGGAAAAGTTATGATTGTTGTTGATTCGCAT
TCTTACAAAACTAAATCCATGCAATTTCATCGTCTGAAGGTTGACTTGGA
GAATCAACATGGAATATTTGTTGAAGATTTGAGTTCGAATAAGAACCATT
ACATTCGCATTGTTGAGATGATAAAAACACGGGACCTCAAAACATTGTTC
ATCGATGAATTTAAAGTGGGGTTTTATtaacaataaaacaaaagagaTCA
TTTATAGGAGAATAAACATAATTGATCTGTCTCTACATTTTACAAAACTA
TAAGAAATTTAAGTCAAATATCATAACCATCAG Run BLAST on NCBI protein sequence of TCONS_00066185-protein >TCONS_00066185-protein ID=TCONS_00066185-protein|Name=TCONS_00066185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp
MANQVNIAGIANQTNMAGIMQKVLSLKPLPIDPTRCTPNKSLYQQILNNS
QATSERQAKQFNLGNSHCTANPMHAADFVLEREYGDSSLFVQGERTSVFI
PPTFVSNQYKKSSFAILNYDVKKDIDRLLVNLKQHSPTYWLTKELETFMQ
TQNNADSIDKKAFGKWILNLQIMYLAISELKTDQVTLPQTTLDIGVFVQG
CLAVLFPTSPLGTLLQQNLFTKNLKKLIKQMIEETPSKDSNLGWLFTLEL
SEVGEKLEHWLYDQLLPLKDDNLQNTVVLSSLIFLTNVQKKMHKETDFLI
ISWERKLIISIELKRTIADDKVFKQLESNHRVFEERLGDQLISGWTYFPV
VGVENDNLSVKSQHYITIQTEIKQWLTSVFKRFPTIPAVSIPNPLDEAKK
LLKILVFAIHVSKKDQIAHITSSTWVEYTSNAIENVSTSHNILFYSNQQM
AIMNNDEPSYRRVVISGPFGVGKSILLTQKAIQLNKRPEYNGKVMIVVDS
HSYKTKSMQFHRLKVDLENQHGIFVEDLSSNKNHYIRIVEMIKTRDLKTL
FIDEFKVGFY Run BLAST on NCBI transcript from alignment at scaffold_451:1151763..1155022+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066185 ID=TCONS_00066185|Name=TCONS_00066185|organism=Clytia hemisphaerica|type=transcript|length=3260bp|location=Sequence derived from alignment at scaffold_451:1151763..1155022+ (Clytia hemisphaerica)
CATAAGTACAGCTAtaatatttttgttgatttatttttgaaagtaaaaTG
GCTAATCAAGTGAATATTGCAGGTATCGCTAATCAAACGAATATGGCAGG
TATCATGCAGAAGGTTTTGtctttgaaaccattaccaatcGATCCAACCA
GATGTACTCCCAACAAATCGTTGTATCAGCAGATTCTCAATAACAGTCAA
GCCACGTCAGAAAGACAAGCAAAACAGTTCAACTTGGGGAATTCGCACTG
TACAGCAAACCCTATGCATGCAGCCGACTTCGTTCTTGAAAGGGAGTATG
GAGACAGTTCTCTCTTTGTTCAAGGTGAACGCACCAGTGTTTTCATACCA
CCCACGTTTGTTTCGAATCAATACAAAAAGTCTTCTTTTGCTATCCTTAa
ttatgacgtcaaaaaagacaTTGACAGACTTTTGGTTAATTTGAAACAAC
ATTCACCAACGTATTGGCTGACCAAAGAATTGGAAACTTTTATGCAAACA
CAAAACAATGCTGATTCTATCGACAAGAAGGCGTTTGGGAAATGGATTCT
TAACCTTCAAATCATGTATCTGGCAATTAGTGAACTGAAAACTGACCAAG
TGACCCTACCACAAACCACTTTGGATATAGGAGTTTTCGTTCAAGGATGT
CTTGCCGTGCTCTTTCCTACATCACCTCTGGGAACACTTCTTCAACAAAA
TCTCTTCaccaaaaacctcaaaaaactGATCAAGCAAATGATTGAAGAAA
CACCAAGCAAAGATTCAAACCTTGGATGGCTATTCACTTTGGAACTGTCA
GAAGTTGGTGAAAAGCTGGAACACTGGTTATATGACCAGCTTCTACCATT
GAAAGATGACAATCTCCAAAACACAGTCGTTCTTTCTTCACTCATTTTTC
TGACAAATGTGcaaaaaaaaatgcataaaGAGACAGATTTTCTAATCATA
TCTTGGGAACGGAAGCTTATCATTTCAATCGAGCTGAAAAGAACAATCGC
AGATGATAAAGTCTTCAAGCAGTTGGAATCAAACCATCGGGTTTTCGAGG
AAAGATTAGGGGACCAATTGATTTCAGGTTGGACGTATTTTCCGGTGGTC
GGCGTGGAGAACGACAACCTTTCAGTAAAAAGTCAGCATTATATCACAAT
CCAAACTGAAATAAAACAATGGCTGACCAGTGTCTTCAAAAGGTTCCCGA
CAATTCCAGCAGTGTCCATACCGAATCCATTGGACGAAGCTAAGAAGCTA
CTCAAAATCCTGGTCTTTGCCATTCACGTTTCGAAAAAAGATCAAATTGC
ACATATTACTAGCTCAACATGGGTCGAATACACCAGCAACGCTATCGAAA
ATGTTTCAACTAGCCACAACATTTTATTCTACTCCAACCAACAGATGGCA
ATCATGAACAACGATGAACCAAGCTACAGGAGAGTGGTCATTAGTGGGCC
TTTTGGTGTTGGAAAATCAATCTTACTTACACAGAAGGCCATACAATTAA
ACAAACGACCTGAATACAATGGAAAAGTTATGATTGTTGTTGATTCGCAT
TCTTACAAAACTAAATCCATGCAATTTCATCGTCTGAAGGTTGACTTGGA
GAATCAACATGGAATATTTGTTGAAGATTTGAGTTCGGTAGGTAATCAAT
TTTCTTATAATTGTGAGTATGACAGTCATTATAAAAATGATCTTCCTTCT
TCAACTGCGATGTAAAATCTAAATTCTTGAGGATGGTTCCTTctttcaag
ttttcaaatccTTTGTGTTTTTTCAAATTGAGTAAGAGAATTATTTTccg
ttttttcattttatagtCATCTCAAAAAGGTCATCATCTTGAAACAATCA
AAGCACGGAAAATCAAAGCATTGTTCATcgattaatttgaaatttcaaaa
aaataaataaaggatGCTCGAAAATCGATTGGATATTTTTAAGTCTTATA
TAATCGGTGTTTATCATTCATTTCACAGGATCAGAACGTTCGCATTCGTT
TTGTTGAGATGATTAAAACACGGAAAATCAAAGCATTGTTCATcgattaa
tttgaaatttcaaaaaaataaataaaggatGCTCGAAAATCGATTGGATA
TTTTTAAGTCTTATATAATCGGTTTTTATCATTCATTTCACAGGATAAGA
ACCATTACATTCGCATTGTTGAGATGATAAAAAGACGGAAAATCAAAGCA
TTGTTCATCGATGAATTTAAAGTGTGGTCAGAAACCATGAaatcacaaaa
caaaaaatggataAAGGAGGAGGTGATGCCACTCGTTGACTACTTATGGA
TCGTCCCATCGACAGAAAGTTTGAGTAAAGGAAATTACCAAGAATTTTCG
ACTGACTTTTTGTTCGTCAATCTTGAACAGAATTTTAGGAATTCTCAACA
GATTGTTAAAGCAACCAAATCTGTAGCCGAGGAGAAATATTATGACTACA
AACAAGGGATCGTCATGCCACTTGGTAATTTTCCGGATGGTTGCGAGCCA
ATATTTGTTGACACGTTCGAAGAAGCAGTGATAGAAGCGAGAAAACGAAC
AAATGAAGGAATCCTTCTGATAAATAGTTACAGAATCGATGCAAATTCTT
ATTCTGAGGTTCTAGATCGGTTGAACGAGAATTATAAAGTATATCACGgt
acaaaaaatgattttaaagagGGAGAAAGTCCGTATAAGTTTCTTCAGGA
AGGAAACATTTTGATCATTGAGGAATTTACATCTTTTGGATTTGACTGGC
CGACAGTTATTGTATTAGAACAAATCGGTGACGCCACAACTTACCACGAT
TGTAATTTCATGTTACGATGTACCACAAACCTCATTGTGGTAAATGCATG
AGAATCATGAGATAATGAAAGTGATTCGGAGAAAACCAATCTTCTGAGGT
AACAAAAAACAAAGAGATCATTTAAAGGAGAATAAATATAATTGATCTGT
CTTTACATTTTACAAAACTATACNgaaatttcaaaaaaataaataaagga
tGCTCGAAAATTGATTGGATATTTTTAAGTCTTATATAATCGGTGTTTAT
CATTCATTTCATAGAATAAGAACCATTACATTCGCATTGTTGAGATGATA
AAAACACGGGACCTCAAAACATTGTTCATCGATGAATTTAAAGTGGGGTT
TTATtaacaataaaacaaaagagaTCATTTATAGGAGAATAAACATAATT
GATCTGTCTCTACATTTTACAAAACTATAAGAAATTTAAGTCAAATATCA
TAACCATCAG Coding sequence (CDS) from alignment at scaffold_451:1151763..1155022+ >TCONS_00066185 ID=TCONS_00066185|Name=TCONS_00066185|organism=Clytia hemisphaerica|type=CDS|length=3366bp|location=Sequence derived from alignment at scaffold_451:1151763..1155022+ (Clytia hemisphaerica)
aTGGCTAATCAAGTGAATATTGCAGGTATCGCTAATCAAACGAATATGGC
AGGTATCATGCAGAAGGTTTTGtctttgaaaccattaccaatcGATCCAA
CCAGATGTACTCCCAACAAATCGTTGTATCAGCAGATTCTCAATAACAGT
CAAGCCACGTCAGAAAGACAAGCAAAACAGTTCAACTTGGGGAATTCGCA
CTGTACAGCAAACCCTATGCATGCAGCCGACTTCGTTCTTGAAAGGGAGT
ATGGAGACAGTTCTCTCTTTGTTCAAGGTGAACGCACCAGTGTTTTCATA
CCACCCACGTTTGTTTCGAATCAATACAAAAAGTCTTCTTTTGCTATCCT
TAattatgacgtcaaaaaagacaTTGACAGACTTTTGGTTAATTTGAAAC
AACATTCACCAACGTATTGGCTGACCAAAGAATTGGAAACTTTTATGCAA
ACACAAAACAATGCTGATTCTATCGACAAGAAGGCGTTTGGGAAATGGAT
TCTTAACCTTCAAATCATGTATCTGGCAATTAGTGAACTGAAAACTGACC
AAGTGACCCTACCACAAACCACTTTGGATATAGGAGTTTTCGTTCAAGGA
TGTCTTGCCGTGCTCTTTCCTACATCACCTCTGGGAACACTTCTTCAACA
AAATCTCTTCaccaaaaacctcaaaaaactGATCAAGCAAATGATTGAAG
AAACACCAAGCAAAGATTCAAACCTTGGATGGCTATTCACTTTGGAACTG
TCAGAAGTTGGTGAAAAGCTGGAACACTGGTTATATGACCAGCTTCTACC
ATTGAAAGATGACAATCTCCAAAACACAGTCGTTCTTTCTTCACTCATTT
TTCTGACAAATGTGcaaaaaaaaatgcataaaGAGACAGATTTTCTAATC
ATATCTTGGGAACGGAAGCTTATCATTTCAATCGAGCTGAAAAGAACAAT
CGCAGATGATAAAGTCTTCAAGCAGTTGGAATCAAACCATCGGGTTTTCG
AGGAAAGATTAGGGGACCAATTGATTTCAGGTTGGACGTATTTTCCGGTG
GTCGGCGTGGAGAACGACAACCTTTCAGTAAAAAGTCAGCATTATATCAC
AATCCAAACTGAAATAAAACAATGGCTGACCAGTGTCTTCAAAAGGTTCC
CGACAATTCCAGCAGTGTCCATACCGAATCCATTGGACGAAGCTAAGAAG
CTACTCAAAATCCTGGTCTTTGCCATTCACGTTTCGAAAAAAGATCAAAT
TGCACATATTACTAGCTCAACATGGGTCGAATACACCAGCAACGCTATCG
AAAATGTTTCAACTAGCCACAACATTTTATTCTACTCCAACCAACAGATG
GCAATCATGAACAACGATGAACCAAGCTACAGGAGAGTGGTCATTAGTGG
GCCTTTTGGTGTTGGAAAATCAATCTTACTTACACAGAAGGCCATACAAT
TAAACAAACGACCTGAATACAATGGAAAAGTTATGATTGTTGTTGATTCG
CATTCTTACAAAACTAAATCCATGCAATTTCATCGTCTGAAGGTTGACTT
GGAGAATCAACATGGAATATTTGTTGAAGATTTGAGTTCGAATAAGAACC
ATTACATTCGCATTGTTGAGATGATAAAAACACGGGACCTCAAAACATTG
TTCATCGATGAATTTAAAGTGGGGTTTTATtaaaTGGCTAATCAAGTGAA
TATTGCAGGTATCGCTAATCAAACGAATATGGCAGGTATCATGCAGAAGG
TTTTGtctttgaaaccattaccaatcGATCCAACCAGATGTACTCCCAAC
AAATCGTTGTATCAGCAGATTCTCAATAACAGTCAAGCCACGTCAGAAAG
ACAAGCAAAACAGTTCAACTTGGGGAATTCGCACTGTACAGCAAACCCTA
TGCATGCAGCCGACTTCGTTCTTGAAAGGGAGTATGGAGACAGTTCTCTC
TTTGTTCAAGGTGAACGCACCAGTGTTTTCATACCACCCACGTTTGTTTC
GAATCAATACAAAAAGTCTTCTTTTGCTATCCTTAattatgacgtcaaaa
aagacaTTGACAGACTTTTGGTTAATTTGAAACAACATTCACCAACGTAT
TGGCTGACCAAAGAATTGGAAACTTTTATGCAAACACAAAACAATGCTGA
TTCTATCGACAAGAAGGCGTTTGGGAAATGGATTCTTAACCTTCAAATCA
TGTATCTGGCAATTAGTGAACTGAAAACTGACCAAGTGACCCTACCACAA
ACCACTTTGGATATAGGAGTTTTCGTTCAAGGATGTCTTGCCGTGCTCTT
TCCTACATCACCTCTGGGAACACTTCTTCAACAAAATCTCTTCaccaaaa
acctcaaaaaactGATCAAGCAAATGATTGAAGAAACACCAAGCAAAGAT
TCAAACCTTGGATGGCTATTCACTTTGGAACTGTCAGAAGTTGGTGAAAA
GCTGGAACACTGGTTATATGACCAGCTTCTACCATTGAAAGATGACAATC
TCCAAAACACAGTCGTTCTTTCTTCACTCATTTTTCTGACAAATGTGcaa
aaaaaaatgcataaaGAGACAGATTTTCTAATCATATCTTGGGAACGGAA
GCTTATCATTTCAATCGAGCTGAAAAGAACAATCGCAGATGATAAAGTCT
TCAAGCAGTTGGAATCAAACCATCGGGTTTTCGAGGAAAGATTAGGGGAC
CAATTGATTTCAGGTTGGACGTATTTTCCGGTGGTCGGCGTGGAGAACGA
CAACCTTTCAGTAAAAAGTCAGCATTATATCACAATCCAAACTGAAATAA
AACAATGGCTGACCAGTGTCTTCAAAAGGTTCCCGACAATTCCAGCAGTG
TCCATACCGAATCCATTGGACGAAGCTAAGAAGCTACTCAAAATCCTGGT
CTTTGCCATTCACGTTTCGAAAAAAGATCAAATTGCACATATTACTAGCT
CAACATGGGTCGAATACACCAGCAACGCTATCGAAAATGTTTCAACTAGC
CACAACATTTTATTCTACTCCAACCAACAGATGGCAATCATGAACAACGA
TGAACCAAGCTACAGGAGAGTGGTCATTAGTGGGCCTTTTGGTGTTGGAA
AATCAATCTTACTTACACAGAAGGCCATACAATTAAACAAACGACCTGAA
TACAATGGAAAAGTTATGATTGTTGTTGATTCGCATTCTTACAAAACTAA
ATCCATGCAATTTCATCGTCTGAAGGTTGACTTGGAGAATCAACATGGAA
TATTTGTTGAAGATTTGAGTTCGAATAAGAACCATTACATTCGCATTGTT
GAGATGATAAAAACACGGGACCTCAAAACATTGTTCATCGATGAATTTAA
AGTGGGGTTTTATtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066185-exon-scaffold_451-1491911889:1151763..1153399 | TCONS_00066185-exon-scaffold_451-1491911889:1151763..1153399 | Clytia hemisphaerica | exon |
| TCONS_00066185-exon-scaffold_451-1510915933:1151763..1153399 | TCONS_00066185-exon-scaffold_451-1510915933:1151763..1153399 | Clytia hemisphaerica | exon |
| TCONS_00066185-exon-scaffold_451-1575043694:1151763..1153399 | TCONS_00066185-exon-scaffold_451-1575043694:1151763..1153399 | Clytia hemisphaerica | exon |
| TCONS_00066185-exon-scaffold_451-1491911889:1154827..1155022 | TCONS_00066185-exon-scaffold_451-1491911889:1154827..1155022 | Clytia hemisphaerica | exon |
| TCONS_00066185-exon-scaffold_451-1510915933:1154827..1155022 | TCONS_00066185-exon-scaffold_451-1510915933:1154827..1155022 | Clytia hemisphaerica | exon |
| TCONS_00066185-exon-scaffold_451-1575043694:1154827..1155022 | TCONS_00066185-exon-scaffold_451-1575043694:1154827..1155022 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_451 | supercontig | scaffold_451:1151763..1155022 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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