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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066167 ID=TCONS_00066167|Name=TCONS_00066167|organism=Clytia hemisphaerica|type=transcript|length=3100bpRun BLAST on NCBI protein sequence of TCONS_00066167-protein >TCONS_00066167-protein ID=TCONS_00066167-protein|Name=TCONS_00066167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=806bp MRRTHNTRRQDIKVSNKEAREFASSFVSGIQNSILLENQNSDSAAKLNNKRun BLAST on NCBI transcript from alignment at scaffold_451:704714..723655+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066167 ID=TCONS_00066167|Name=TCONS_00066167|organism=Clytia hemisphaerica|type=transcript|length=18942bp|location=Sequence derived from alignment at scaffold_451:704714..723655+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_451:704714..723655+ >TCONS_00066167 ID=TCONS_00066167|Name=TCONS_00066167|organism=Clytia hemisphaerica|type=CDS|length=31473bp|location=Sequence derived from alignment at scaffold_451:704714..723655+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066167 vs. Swiss-Prot (Human)
Match: FBXL7 (F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 8.247e-30 Identity = 97/373 (26.01%), Postives = 170/373 (45.58%), Query Frame = 2
Query: 1397 LPDEIILHIFGYLKMKDIISCLQVCRNFYKIANDSVLWKEISFRKHLNLTDNVL----QKIAWKHPT---SLSLVQCNG-KQITSEGLRYLFKTCAESLEKLDVSCCHGGVFVGESILLYAAVKCQNIKSLDXXXXXXXXXXXXXXXKASTRLEKLCLNGCQAITDDSIIKIVKKHGE--SLEVLEVLGCFNISFLSTNAVSEYCKRLIKLNVGQCHKITNGALSTISKSLPKLQVLDIRGCKQIRDISLKNIAVGCQQLKTIVIANCPLITDASLAAIAVHLPKLECIDVCGCGKISDRGVLSLVKGCRQMKSLDLSSTKVTHKSVTGVGNYNRYTIQSLKLSFCHSITDQCLRTVVERSKRLQTLHLYGCK 2485
LPD ++ IF +L + C +VCR +Y +A D LW+ I D L +++ P L V +G +++T GL Y C L +L+VS C+ + + C N++ LDVS + C ++T ++ IK+ HG+ S+ L++ CF + + ++ +C +L L + +C ++T+ L + ++ L + C+ + D L+ IA +L+ + IA+C +TD + +A + KL ++ GC I+D GV L K C ++KSLD+ + + N + ++ L L C SIT Q L+ V LQTL++ C+
Sbjct: 117 LPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGL-YTIAQCCPELRRLEVSGCYN---ISNEAVFDVVSLCPNLEHLDVSGCSKVT--------------------CISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCE 465 The following BLAST results are available for this feature:
BLAST of TCONS_00066167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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