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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066154 ID=TCONS_00066154|Name=TCONS_00066154|organism=Clytia hemisphaerica|type=transcript|length=1913bpRun BLAST on NCBI protein sequence of TCONS_00066154-protein >TCONS_00066154-protein ID=TCONS_00066154-protein|Name=TCONS_00066154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=605bp IRCFKKMSDKEEVFCVCKKPYEDGQFMIECGKCNGWFHGSCVGIEEYQAARun BLAST on NCBI transcript from alignment at scaffold_451:490771..507515+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066154 ID=TCONS_00066154|Name=TCONS_00066154|organism=Clytia hemisphaerica|type=transcript|length=16745bp|location=Sequence derived from alignment at scaffold_451:490771..507515+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_451:490771..507515+ >TCONS_00066154 ID=TCONS_00066154|Name=TCONS_00066154|organism=Clytia hemisphaerica|type=CDS|length=30906bp|location=Sequence derived from alignment at scaffold_451:490771..507515+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00066154 vs. Swiss-Prot (Human)
Match: KDM7A (Lysine-specific demethylase 7A OS=Homo sapiens GN=KDM7A PE=1 SV=2) HSP 1 Score: 458.373 bits (1178), Expect = 1.171e-148 Identity = 216/452 (47.79%), Postives = 297/452 (65.71%), Query Frame = 2
Query: 38 VFCVCKKPYEDGQFMIECGKCNGWFHGSCVGIEEYQAADIDIYVCPKCQPKHGPLVXXXXXXXXXXXXXFLDATCSDGGLEVKKRRNIARHNYKEIHEGTKQITAGTVMFVRQLKARKFKEPTEDVLTTLPDGTELNGKFLHENGFDKPMVIQEKSGLGITVPPPNFTIYDVEKRVGSMHELHVIDVARQEDLRMKMREWTEYYNSPVRGKVLNVISLEFSKTNMAELVEAPEIVRNISWVDNAWPKEKNSEDPHTKPIVAKYCLMSVKDCYTDFHVDFGGTSVWYHIVRGEKIFYFIEPTEENLKKYAQWVSSSDQGQVFFGEKVDKCYKVRLTQGNTLILPTGWIHAVLTPKDSLVFGGNFLHSYNIALQLRIYELEKSLHTPLKFLFPNFETTNWFAARSILRKIREIHQGGYRLPIFLYKGVETMLLAFRKWTKKQDEFAKFHKLQIP 1393
V+CVC++PY+ +FMIEC C WFHGSCVG+EE+ A DID+Y CP C HG + +KKRRN RH+Y EI +G+K + AGT F+++L++R F P+ D + G++L ++L ++GFD P+++ + LG+ +P P F++ DVE+ VG + VIDVARQ D +M + + +Y+ +P R KVLNVISLEFS T M+ELVE P+I + +SWV+N WP + KP V KYCLM V+D YTDFH+DFGGTSVWYH++ GEKIFY I+PT+ENL +Y W SS Q +VFFG+KVDKCYK + QG+TL +PTGWIHAVLT +D + FGGNFLH+ NI +QLR YE+EK L TP F FP FE WF A+++L ++E+ + G++ +L +GV+ + A + W KK E H +IP
Sbjct: 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSL-------------------------MKKRRNWHRHDYTEIDDGSKPVQAGTRTFIKELRSRVF--PSADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWP----DDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLETLKELREDGFQPQTYLVQGVKALHTALKLWMKK--ELVSEHAFEIP 456 The following BLAST results are available for this feature:
BLAST of TCONS_00066154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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