|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066149 ID=TCONS_00066149|Name=TCONS_00066149|organism=Clytia hemisphaerica|type=transcript|length=1656bp
aataaaataaatttgaaaatcaaggtGTTTTATATGACGGAacaagagaa
agaaaaaatgaaaccgAAAGTTCATACTGAGTTGGCATTACGTAATGAAT
TGAATGTAGGGAATTTTGGATTCCATTTCACCGTGATCGgagaatcaaaa
caaagtttcgTCCAATCAAACATCAAATGCTGCGGAGCCACGTTCATCAT
GGTTTATCGTTTAATCGCATCAGCGTATCTCATCTTCGGGATGACTTTGA
GTATCATTAATCACCACGAGAATGCAATATGGATCATTTTTATGACCAGC
TGTGTTTACATTCTAACGCTGGTCTACTTTGTATATGGCTTCGTTTTGAG
CTGGTTCTCCGTTTTCTATAAGGTCGAATATTGTCGAGGTAGTACGTTAC
GGAACGACCAATGTGGTGGTCGAATCCCGAATCGGACTTTCGATTCCGTT
TCCAAGAACAACAAAGATGCTTTGAACTTACAATATATACCGAACAAAAA
CGCCACAATCTCCAGCACATCATCAAGTGTTAACGGTAGTACAAGCCAGC
TTATGACTCAAACCAGCGCTTATAGTCAATACAGTGTTGATTCTATTATA
TTGGATATAGAAGAGAATGTTAGGCGTGTGGGTGCGAAACGTGATCACAG
AGGTTCTAAACGTGATCACGGAGGCTCCAAACGTGACTTACATCACGCAC
GACTACAAGATAACCGGCTTCCGTCAATGAATTCTGAAGTTTTCTTATCA
GAAACTATTGGTGAGGTCACGTGGTTTTTGAAAATCTATTGGATGCTTTC
ATCCAGTGTGCTGACGTTAGCATTTTTAACTGTCCTTGTTTACTGGACCC
TATTGTTTGATTCGAACCAATCATCGCACGCTCTACAATGGTACTTGCGC
TGTGATCGTCACGGTCTTGCATTCTTATTGGTTCTCGTTGATCACATGAT
TAGCCGGACACCAATCAGATTGCTGCATTTTATATATCCATCCATACTGA
TGCTTTTGTACGGAGCATGTAATGGAGTTTATTGTTACGCAACTAAGAGG
GTTGTTTATTCGAAAATGGATTTTTTAGAACAGCCGCTAATCGCTGTTGG
ACTTGTGTTATTATGTGCACTAGTCGCGTCTCCAGTTGGACAacttattt
tgtattttgtggTATACAGGCTAAAGGAGAAATGTCTGGCATTCTACTGA
ATACTTTATGGTTGAGGTTTAAAGGCTAGTTATACAGCTGGAACAAAGCC
TTTTATGGATGTTGTATGGACATTAAATGAACGTTGTGTCAGCTCATGAA
GCAACACCTTCTAACTTCctaattttttcagccagtcgGGGTAGAAAATT
AATGAACTCGAAGAGGATTgatattccaaaattttttatggctggggatt
taagtTTCATCGTTTTAATGTGAGAACAATCAGTTGGGATGGAACGGATG
ATTTTTCACGGAGGacaatatttttgccaattttttcagtgagAGAGGAC
TtcatcgggtctgtgagaagggaatgTCATGGAAATAAAACTTCCTAATA
CAGAACACCTATTCCAAGGGGATTCTATGTTATTGGCTACTTGCAGATTT
CAGGCCCGGCGGAAACGGGAATGGAGAGGCTTCACCCTCCCCACCTTTGc
ggagca Run BLAST on NCBI protein sequence of TCONS_00066149-protein >TCONS_00066149-protein ID=TCONS_00066149-protein|Name=TCONS_00066149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
NKINLKIKVFYMTEQEKEKMKPKVHTELALRNELNVGNFGFHFTVIGESK
QSFVQSNIKCCGATFIMVYRLIASAYLIFGMTLSIINHHENAIWIIFMTS
CVYILTLVYFVYGFVLSWFSVFYKVEYCRGSTLRNDQCGGRIPNRTFDSV
SKNNKDALNLQYIPNKNATISSTSSSVNGSTSQLMTQTSAYSQYSVDSII
LDIEENVRRVGAKRDHRGSKRDHGGSKRDLHHARLQDNRLPSMNSEVFLS
ETIGEVTWFLKIYWMLSSSVLTLAFLTVLVYWTLLFDSNQSSHALQWYLR
CDRHGLAFLLVLVDHMISRTPIRLLHFIYPSILMLLYGACNGVYCYATKR
VVYSKMDFLEQPLIAVGLVLLCALVASPVGQLILYFVVYRLKEKCLAFY Run BLAST on NCBI transcript from alignment at scaffold_451:458136..461335+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066149 ID=TCONS_00066149|Name=TCONS_00066149|organism=Clytia hemisphaerica|type=transcript|length=3200bp|location=Sequence derived from alignment at scaffold_451:458136..461335+ (Clytia hemisphaerica)
aataaaataaatttgaaaatcaaggtGTTTTATATGACGGAacaagagaa
agaaaaaatgaaaccgAAAGTTCATACTGAGTTGGCATTACGTAATGAAT
TGAATGTAGGGAATTTTGGATTCCATTTCACCGTGATCGgagaatcaaaa
caaagtttcgTCCAATCAAACGTAAGTTGCATTCTTCCAAATTGCCACAG
GACGTTTTTTCAACGTACATCTAACGTCATATTGAATTAGGTTTTGAATG
TTAGTTATAGCGGGTTGTTTTAAGCAAAATCTCTCAAatgggtttttcca
gaaaaaagatTAATATGGGGGAGGAGGATATAAcacttttggaaatttac
ccccagacagcaggtctaaccccccggACTAGCATCAGTTGACTctctgg
acattcaaaattaacCCTAAAACAGAGCAAAAATaccccccaaacagagc
aagtttaccccctggacaaggcaaattttgtagatttttcaataCCCCCG
TACACTATATCCTCTacccccccccatgtacggacatttccTGGAAGTGC
CCACTCCTACAAGAAAGCACATCCCTTTTAAtgtagctggcacacaacgt
tgtttcaacgttcatctatcgtaatatggacgttgtgaacattagatagt
CGTTGAAACACCGCTTCGCATTTTGACACCAATTCCTTTATGTAGGGAAT
TCGTAATCGAAGGAAAGTTTTTAATTTCTTCTCCATATGTAGAGACCAGT
GACTCCCCAGACTCTATCATCATTCAAGCCTACCAATATTCTATTCATCA
ATTAGATCAAATGCTGCGGAGCCACGTTCATCATGGTTTATCGTTTAATC
GCATCAGCGTATCTCATCTTCGGGATGACTTTGAGTATCATTAATCACCA
CGAGAATGCAATATGGATCATTTTTATGACCAGCTGTGTTTACATTCTAA
CGCTGGTCTACTTTGTATATGGCTTCGTTTTGAGCTGGTTCTCCGTTTTC
TATAAGGTAAGAATTACTCACaatcatggcgttctaaatctaaaggccgg
tctccactttcgcacgaaatgagccacagtttttttcttaactttttttg
cctgaagaaaagattacggcataaaaaagtttcgcgcgaacaaaaaaagt
tgaaggaagttcaacttttttcattcGTTACGTCAatatttcgaccaatg
gaattacttcatttttcaaccgaccaataagcttacaaaaacgtcaaaaa
gttttcgctcatgtcgcacGAAAGTGGAGACTGGCCTTAAGGCCTAACAA
ACgtgaattgacgtcaaaatccaAGGGGCCtatttttgaagtcgttgcat
tgtgGCGTAAAAAGAAGAGTGGAAAAAAGTTGAATTCTGAtgagatttag
aacgccatgctcACGACGTTTTTTCAACGTCAATCTGACAATATTTGGAC
GTTAGGGACGTTAGAGAAACGTTGTTATGATGAGAAAAGATTTGGACGTT
TTTGAGACCCTTTTAgagaatttttgtgaaaattttgtaCGATTTTTCCG
TTTTCTATAAGGTTAAAATTCAGGTTTAGAGCTTTATGAACTAGATCTAA
AACGATAACTAAGATTTCTCGTGAACCTAAAAATGTCTACTAGTAATGCT
CAATTTGAGGTGTCCATTGTTATACCAACGTATCACAAGTGAGACACTTC
CTGGCCCGGCGGGGGgaactcgattcaaaaacgaacCGTATGagtctagc
ctttcgggcttggaagtcaatgattCAACCCCACTAAGTGAAGTGGGTTC
CGTCGGGGTACTAAAGCAAACCatttattcaatatattttatatatgtcT
TTCATAGGTCGAATATTGTCGAGGTAGTACGTTACGGAACGACCAATGTG
GTGGTCGAATCCCGAATCGGACTTTCGATTCCGTTTCCAAGAACAACAAA
GATGCTTTGAACTTACAATATATACCGAACAAAAACGCCACAATCTCCAG
CACATCATCAAGTGTTAACGGTAGTACAAGCCAGCTTATGACTCAAACCA
GCGCTTATAGTCAATACAGTGTTGATTCTATTATATTGGATATAGAAGAG
AATGTTAGGCGTGTGGGTGCGAAACGTGATCACAGAGGTTCTAAACGTGA
TCACGGAGGCTCCAAACGTGACTTACATCACGCACGACTACAAGATAACC
GGCTTCCGTCAATGAATTCTGAAGTTTTCTTATCAGAAACTATTGGTGAG
GTCACGTGGTTTTTGAAAATCTATTGGATGCTTTCATCCAGTGTGCTGAC
GTTAGCATTTTTAACTGTCCTTGTTTACTGGACCCTATTGTTTGATTCGA
ACCAATCATCGCACGCTCTACAATGGTACTTGCGCTGTGATCGTCACGGT
CTTGCATTCTTATTGGTTCTCGTTGATCACATGATTAGCCGGACACCAAT
CAGATTGCTGCATTTTATATATCCATCCATACTGATGCTTTTGTACGGAG
CATGTAATGGAGTTTATTGTTACGCAACTAAGAGGGTTGTTTATTCGAAA
ATGGATTTTTTAGAACAGCCGCTAATCGCTGTTGGACTTGTGTTATTATG
TGCACTAGTCGCGTCTCCAGTTGGACAacttattttgtattttgtggTAT
ACAGGCTAAAGGAGAAATGTCTGGCATTCTACTGAATACTTTATGGTTGA
GGTTTAAAGGCTAGTTATACAGCTGGAACAAAGCCTTTTATGGATGTTGT
ATGGACATTAAATGAACGTTGTGTCAGCTCATGAAGCAACACCTTCTAAC
TTCctaattttttcagccagtcgGGGTAGAAAATTAATGAACTCGAAGAG
GATTgatattccaaaattttttatggctggggatttaagtTTCATCGTTT
TAATGTGAGAACAATCAGTTGGGATGGAACGGATGATTTTTCACGGAGGa
caatatttttgccaattttttcagtgagAGAGGACTtcatcgggtctgtg
agaagggaatgTCATGGAAATAAAACTTCCTAATACAGAACACCTATTCC
AAGGGGATTCTATGTTATTGGCTACTTGCAGATTTCAGGCCCGGCNGAAC
ACCTATTCCAAGGGGATTCTATGTTATTGGTTACTTGCAGATTTCAGGCC
CGGCGGAAACGGGAATGGAGAGGCTTCACCCTCCCCACCTTTGcggagca
Coding sequence (CDS) from alignment at scaffold_451:458136..461335+ >TCONS_00066149 ID=TCONS_00066149|Name=TCONS_00066149|organism=Clytia hemisphaerica|type=CDS|length=3600bp|location=Sequence derived from alignment at scaffold_451:458136..461335+ (Clytia hemisphaerica)
aataaaataaatttgaaaatcaaggtGTTTTATATGACGGAacaagagaa
agaaaaaatgaaaccgAAAGTTCATACTGAGTTGGCATTACGTAATGAAT
TGAATGTAGGGAATTTTGGATTCCATTTCACCGTGATCGgagaatcaaaa
caaagtttcgTCCAATCAAACATCAAATGCTGCGGAGCCACGTTCATCAT
GGTTTATCGTTTAATCGCATCAGCGTATCTCATCTTCGGGATGACTTTGA
GTATCATTAATCACCACGAGAATGCAATATGGATCATTTTTATGACCAGC
TGTGTTTACATTCTAACGCTGGTCTACTTTGTATATGGCTTCGTTTTGAG
CTGGTTCTCCGTTTTCTATAAGGTCGAATATTGTCGAGGTAGTACGTTAC
GGAACGACCAATGTGGTGGTCGAATCCCGAATCGGACTTTCGATTCCGTT
TCCAAGAACAACAAAGATGCTTTGAACTTACAATATATACCGAACAAAAA
CGCCACAATCTCCAGCACATCATCAAGTGTTAACGGTAGTACAAGCCAGC
TTATGACTCAAACCAGCGCTTATAGTCAATACAGTGTTGATTCTATTATA
TTGGATATAGAAGAGAATGTTAGGCGTGTGGGTGCGAAACGTGATCACAG
AGGTTCTAAACGTGATCACGGAGGCTCCAAACGTGACTTACATCACGCAC
GACTACAAGATAACCGGCTTCCGTCAATGAATTCTGAAGTTTTCTTATCA
GAAACTATTGGTGAGGTCACGTGGTTTTTGAAAATCTATTGGATGCTTTC
ATCCAGTGTGCTGACGTTAGCATTTTTAACTGTCCTTGTTTACTGGACCC
TATTGTTTGATTCGAACCAATCATCGCACGCTCTACAATGGTACTTGCGC
TGTGATCGTCACGGTCTTGCATTCTTATTGGTTCTCGTTGATCACATGAT
TAGCCGGACACCAATCAGATTGCTGCATTTTATATATCCATCCATACTGA
TGCTTTTGTACGGAGCATGTAATGGAGTTTATTGTTACGCAACTAAGAGG
GTTGTTTATTCGAAAATGGATTTTTTAGAACAGCCGCTAATCGCTGTTGG
ACTTGTGTTATTATGTGCACTAGTCGCGTCTCCAGTTGGACAacttattt
tgtattttgtggTATACAGGCTAAAGGAGAAATGTCTGGCATTCTACTGA
aataaaataaatttgaaaatcaaggtGTTTTATATGACGGAacaagagaa
agaaaaaatgaaaccgAAAGTTCATACTGAGTTGGCATTACGTAATGAAT
TGAATGTAGGGAATTTTGGATTCCATTTCACCGTGATCGgagaatcaaaa
caaagtttcgTCCAATCAAACATCAAATGCTGCGGAGCCACGTTCATCAT
GGTTTATCGTTTAATCGCATCAGCGTATCTCATCTTCGGGATGACTTTGA
GTATCATTAATCACCACGAGAATGCAATATGGATCATTTTTATGACCAGC
TGTGTTTACATTCTAACGCTGGTCTACTTTGTATATGGCTTCGTTTTGAG
CTGGTTCTCCGTTTTCTATAAGGTCGAATATTGTCGAGGTAGTACGTTAC
GGAACGACCAATGTGGTGGTCGAATCCCGAATCGGACTTTCGATTCCGTT
TCCAAGAACAACAAAGATGCTTTGAACTTACAATATATACCGAACAAAAA
CGCCACAATCTCCAGCACATCATCAAGTGTTAACGGTAGTACAAGCCAGC
TTATGACTCAAACCAGCGCTTATAGTCAATACAGTGTTGATTCTATTATA
TTGGATATAGAAGAGAATGTTAGGCGTGTGGGTGCGAAACGTGATCACAG
AGGTTCTAAACGTGATCACGGAGGCTCCAAACGTGACTTACATCACGCAC
GACTACAAGATAACCGGCTTCCGTCAATGAATTCTGAAGTTTTCTTATCA
GAAACTATTGGTGAGGTCACGTGGTTTTTGAAAATCTATTGGATGCTTTC
ATCCAGTGTGCTGACGTTAGCATTTTTAACTGTCCTTGTTTACTGGACCC
TATTGTTTGATTCGAACCAATCATCGCACGCTCTACAATGGTACTTGCGC
TGTGATCGTCACGGTCTTGCATTCTTATTGGTTCTCGTTGATCACATGAT
TAGCCGGACACCAATCAGATTGCTGCATTTTATATATCCATCCATACTGA
TGCTTTTGTACGGAGCATGTAATGGAGTTTATTGTTACGCAACTAAGAGG
GTTGTTTATTCGAAAATGGATTTTTTAGAACAGCCGCTAATCGCTGTTGG
ACTTGTGTTATTATGTGCACTAGTCGCGTCTCCAGTTGGACAacttattt
tgtattttgtggTATACAGGCTAAAGGAGAAATGTCTGGCATTCTACTGA
aataaaataaatttgaaaatcaaggtGTTTTATATGACGGAacaagagaa
agaaaaaatgaaaccgAAAGTTCATACTGAGTTGGCATTACGTAATGAAT
TGAATGTAGGGAATTTTGGATTCCATTTCACCGTGATCGgagaatcaaaa
caaagtttcgTCCAATCAAACATCAAATGCTGCGGAGCCACGTTCATCAT
GGTTTATCGTTTAATCGCATCAGCGTATCTCATCTTCGGGATGACTTTGA
GTATCATTAATCACCACGAGAATGCAATATGGATCATTTTTATGACCAGC
TGTGTTTACATTCTAACGCTGGTCTACTTTGTATATGGCTTCGTTTTGAG
CTGGTTCTCCGTTTTCTATAAGGTCGAATATTGTCGAGGTAGTACGTTAC
GGAACGACCAATGTGGTGGTCGAATCCCGAATCGGACTTTCGATTCCGTT
TCCAAGAACAACAAAGATGCTTTGAACTTACAATATATACCGAACAAAAA
CGCCACAATCTCCAGCACATCATCAAGTGTTAACGGTAGTACAAGCCAGC
TTATGACTCAAACCAGCGCTTATAGTCAATACAGTGTTGATTCTATTATA
TTGGATATAGAAGAGAATGTTAGGCGTGTGGGTGCGAAACGTGATCACAG
AGGTTCTAAACGTGATCACGGAGGCTCCAAACGTGACTTACATCACGCAC
GACTACAAGATAACCGGCTTCCGTCAATGAATTCTGAAGTTTTCTTATCA
GAAACTATTGGTGAGGTCACGTGGTTTTTGAAAATCTATTGGATGCTTTC
ATCCAGTGTGCTGACGTTAGCATTTTTAACTGTCCTTGTTTACTGGACCC
TATTGTTTGATTCGAACCAATCATCGCACGCTCTACAATGGTACTTGCGC
TGTGATCGTCACGGTCTTGCATTCTTATTGGTTCTCGTTGATCACATGAT
TAGCCGGACACCAATCAGATTGCTGCATTTTATATATCCATCCATACTGA
TGCTTTTGTACGGAGCATGTAATGGAGTTTATTGTTACGCAACTAAGAGG
GTTGTTTATTCGAAAATGGATTTTTTAGAACAGCCGCTAATCGCTGTTGG
ACTTGTGTTATTATGTGCACTAGTCGCGTCTCCAGTTGGACAacttattt
tgtattttgtggTATACAGGCTAAAGGAGAAATGTCTGGCATTCTACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066149-exon-scaffold_451-1491911889:458136..458306 | TCONS_00066149-exon-scaffold_451-1491911889:458136..458306 | Clytia hemisphaerica | exon |
| TCONS_00066149-exon-scaffold_451-1510915933:458136..458306 | TCONS_00066149-exon-scaffold_451-1510915933:458136..458306 | Clytia hemisphaerica | exon |
| TCONS_00066149-exon-scaffold_451-1575043694:458136..458306 | TCONS_00066149-exon-scaffold_451-1575043694:458136..458306 | Clytia hemisphaerica | exon |
| TCONS_00066149-exon-scaffold_451-1491911889:458941..459141 | TCONS_00066149-exon-scaffold_451-1491911889:458941..459141 | Clytia hemisphaerica | exon |
| TCONS_00066149-exon-scaffold_451-1510915933:458941..459141 | TCONS_00066149-exon-scaffold_451-1510915933:458941..459141 | Clytia hemisphaerica | exon |
| TCONS_00066149-exon-scaffold_451-1575043694:458941..459141 | TCONS_00066149-exon-scaffold_451-1575043694:458941..459141 | Clytia hemisphaerica | exon |
| TCONS_00066149-exon-scaffold_451-1491911889:459993..461223 | TCONS_00066149-exon-scaffold_451-1491911889:459993..461223 | Clytia hemisphaerica | exon |
| TCONS_00066149-exon-scaffold_451-1510915933:459993..461223 | TCONS_00066149-exon-scaffold_451-1510915933:459993..461223 | Clytia hemisphaerica | exon |
| TCONS_00066149-exon-scaffold_451-1575043694:459993..461223 | TCONS_00066149-exon-scaffold_451-1575043694:459993..461223 | Clytia hemisphaerica | exon |
| TCONS_00066149-exon-scaffold_451-1491911889:461283..461335 | TCONS_00066149-exon-scaffold_451-1491911889:461283..461335 | Clytia hemisphaerica | exon |
| TCONS_00066149-exon-scaffold_451-1510915933:461283..461335 | TCONS_00066149-exon-scaffold_451-1510915933:461283..461335 | Clytia hemisphaerica | exon |
| TCONS_00066149-exon-scaffold_451-1575043694:461283..461335 | TCONS_00066149-exon-scaffold_451-1575043694:461283..461335 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:458136..461335 + |
Blast
The following BLAST results are available for this feature:
|
