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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066134 ID=TCONS_00066134|Name=TCONS_00066134|organism=Clytia hemisphaerica|type=transcript|length=2212bp
TTTTCCACCAAAGTCGAAGTATCACAATTTGAAGTTTCTAAAAAGTGGAT
CCTTACACaattcttacgttgaaattttggaaaaaaagttagacaaaaaa
tattttaggtctccctcaggacaatagaaggaATCTACATGCCAAATACC
ACGAAAAATCTGATTATACCTTATGAATATGGCCTTTGAGATGGCTTAGA
TTGTTTTCTATTAATCATTTGAAAGTCTAAATTGAAAGTTGGTTACACAT
GGCAGAAGATGTTCTTACATGTTGCATTGATGCTGATTTTATCAACAGGC
TGTTTTGCTGAAAACTCGACTCTCAGCGATGATGTTGCTCAGACTCGTCA
AAACAGCACATGGTATGGTGACTTCAACCAAACAAAGCCCATCGAAATCC
AACATCTGAATGGAACATCAGCAAACATCAGTATTGCCAGCAAAGCTTCA
TCTAAAGAGCAAAACGTTACCATCAATTCTTTATCTAAAGATGAAACCAA
GACAAATTCAACAAACGACATTATCAAAGCATTCTCAAATTTCACTTTGA
CAAATTCAAGTTTAATCAACGAGACTGATAATGGTGTTGAAACCGTTGAC
AATTCTAGTGGAGATAACGTCAATTTAAATGGTAATCCGTTGAATCAAAC
TGTAGCAGAATATACAGGAGATAATAATTTAAACGAAACTATGGAAGGTG
TAAAACAAACTATATCAGGAGAAAAAGTAGAGAGCGAATCTCCGGAGAGC
GAATCAGCTATCTTCGGTAATCTAATGGACCAAACAGACGTTGTTAGTAT
AAAAAATATCCACAAATTGTTTAAACCATTAACACGAAATCAAATTTCTT
CCCCATATATCTATGCTTCTGAACCTAAACAAGGCTGGAAAGAGCTCCAT
AACCCAAAGTCCTTTCGAAGCAAACcaacttctttttcaaattcacaACA
ACAAGGAGAGAAAAACATCATGatacaagaatcgcaaaataaGAAACCAA
ATTATAACAAAAAGAAACTAACCCATAAGCAAAGAAAGAATAAGAGTCAC
cagatatcatattttcaaccCACAATGAAATGGCTACCCTTGTGTTGTCG
AGATTCACTCGTGGCGCCCTTTTTCACATACAACCTACATATTATACCGC
CACCTTGTTGCAGGTTCAACCGACATTCGATTGTTCTTCCTCATTGCTGC
AAATATTTTGAGGACCCTGATGATATCGCCGCAAAAGGGGATCCAGAAAG
TGATTAAACTGGTGCAAAAATAGGGAGTTAGATAGTAATCGAAATGGTGA
AAGAGGGGACCCAGATAGTGATTGTGCCAGAACGTTATGCAAAATTACAC
CCCATTCTCACAGactcactggctgaaaaaaatccttCCCCTGTGAGAAG
GGGGTCCAAATCGGACCTAAGAAATTACTGAATACTTTAAATAAAGGAAG
CGCGGAAAGTGATCATATCGTGAAACATGAGCCGTTATAAACGTTAGGTG
GAAGTTGAACAACGTAGCAAAGAAGTCCAACTGTCTATTAGTCATGTgct
aaaggttcaatctcaaaataagtgtcttggaAGATTGCGATTCTGTTCTG
CCTTTGGGATTGGTctttttgtcatatgaaaacATTGAATGTTCCTGTAC
ATGAAAAAagggcaatctcaatctcaaagatgaccacTACAGTAAAACTA
TATAGCTTTTGTAAGctactaattttgagattgaacctttagtcatgtga
acGACACTATGAAGGACATGAAGGAATACCACGGTCAATAATTATTGATG
TGCACCCACTgagaacaaactttttgaattgGTATATTTTCTACAACAAG
GATATAGGAGGATGGATGGAGAGAAGATGCATTGCTGCCACGGTAAAAGG
AGTCGTTGAGACGGATTGTTTAGAAGTTGTGTTCACGAGATCCCAAGTTA
GCAcagaacgttgtttcaacgtttatttaacgttcacagcGTCCATATAA
CTTtatagatgaacgttgaaacaacgttgggGTGAAAGTTGAAGATTTCC
TAATATTTGAGTGTCATAGATACAGAACtaactattaactttttattAGG
ATTTTTAGTAAGGTTGTAGATTTTTGGCTACaagaattttttaatatttc
aaaaaatattgctgctttTAAGAATTAGAGACTATGAGAACGCTAGTATG
AGTAAAAAAAAT Run BLAST on NCBI protein sequence of TCONS_00066134-protein >TCONS_00066134-protein ID=TCONS_00066134-protein|Name=TCONS_00066134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MFLHVALMLILSTGCFAENSTLSDDVAQTRQNSTWYGDFNQTKPIEIQHL
NGTSANISIASKASSKEQNVTINSLSKDETKTNSTNDIIKAFSNFTLTNS
SLINETDNGVETVDNSSGDNVNLNGNPLNQTVAEYTGDNNLNETMEGVKQ
TISGEKVESESPESESAIFGNLMDQTDVVSIKNIHKLFKPLTRNQISSPY
IYASEPKQGWKELHNPKSFRSKPTSFSNSQQQGEKNIMIQESQNKKPNYN
KKKLTHKQRKNKSHQISYFQPTMKWLPLCCRDSLVAPFFTYNLHIIPPPC
CRFNRHSIVLPHCCKYFEDPDDIAAKGDPESD Run BLAST on NCBI transcript from alignment at scaffold_451:376510..379472+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066134 ID=TCONS_00066134|Name=TCONS_00066134|organism=Clytia hemisphaerica|type=transcript|length=2963bp|location=Sequence derived from alignment at scaffold_451:376510..379472+ (Clytia hemisphaerica)
TTTTCCACCAAAGTCGAAGTATCACAATTTGAAGTTTCTAAAAAGTGGAT
CCTTACACaattcttacgttgaaattttggaaaaaaagttagacaaaaaa
tattttaggtctccctcaggacaatagaaggaATCTACATGCCAAATACC
ACGAAAAATCTGATTATACCTTATGAATATGGCCTTTGAGATGGCTTAGA
TTGTTTTCTATTAATCATTTGAAAGTCTAAATTGAAAGTTGGTTACACAT
GGCAGAAGATGTTCTTACATGTTGCATTGATGCTGATTTTATCAACAGGT
AAAAATTCATATGGAGGTTGGTTTGAAAAGAAACTATTGTTTCAATCTCT
GACGACATAGATCCTaggctacacatttttttataagaatggtgtttttt
tcatttcatcatggatattcttaatttttttgcgaaaatcatCCTataat
attcttacggtattcttaggttaagatcgaaatttaaCCTGATTTTAACA
TGTAATACACACCTGGAGAATATTGACCCTTAGGGTAGTATTATTGGCAA
TTTACAGgtgaaaatgctttaaaaatggcattcttaggttcagttgctaa
attccatgatggtgttaTTCTAAGcatatttttaatcttttggccatttt
catcacggacactcttataaagtgtattcttataaaagaaaagtgtGTAT
CTTAAATTTCAAATGAGGGCACTACAACCTCTCTATCCAGGCTTATTGGT
AGGGCCccctccccactggaaaatttggtcaaaatttcatcaccaCTATT
TGAAATCgatttaaaatttctaaaaacatCCGCACTggatttttgagctt
ttgaagAATAGATTTTCTATGCCCATTgtgatttcgatagaaatttttat
ccccaggGCTGTGGAATTTAGCTTGCTTACTTTAAAAAGATTACCTAATT
TAGGTTGACATGATAAAGCTTATCCATCCAGCTGATGTTTTTGGTTCTAA
TTGTatctttacaaatataataatTGTAGGTACGTTGAATTTCTTCCAGG
CTGTTTTGCTGAAAACTCGACTCTCAGCGATGATGTTGCTCAGACTCGTC
AAAACAGCACATGGTATGGTGACTTCAACCAAACAAAGCCCATCGAAATC
CAACATCTGAATGGAACATCAGCAAACATCAGTATTGCCAGCAAAGCTTC
ATCTAAAGAGCAAAACGTTACCATCAATTCTTTATCTAAAGATGAAACCA
AGACAAATTCAACAAACGACATTATCAAAGCATTCTCAAATTTCACTTTG
ACAAATTCAAGTTTAATCAACGAGACTGATAATGGTGTTGAAACCGTTGA
CAATTCTAGTGGAGATAACGTCAATTTAAATGGTAATCCGTTGAATCAAA
CTGTAGCAGAATATACAGGAGATAATAATTTAAACGAAACTATGGAAGGT
GTAAAACAAACTATATCAGGAGAAAAAGTAGAGAGCGAATCTCCGGAGAG
CGAATCAGCTATCTTCGGTAATCTAATGGACCAAACAGACGTTGTTAGTA
TAAAAAATATCCACAAATTGTTTAAACCATTAACACGAAATCAAATTTCT
TCCCCATATATCTATGCTTCTGAACCTAAACAAGGCTGGAAAGAGCTCCA
TAACCCAAAGTCCTTTCGAAGCAAACcaacttctttttcaaattcacaAC
AACAAGGAGAGAAAAACATCATGatacaagaatcgcaaaataaGAAACCA
AATTATAACAAAAAGAAACTAACCCATAAGCAAAGAAAGAATAAGAGTCA
CcagatatcatattttcaaccCACAATGAAATGGCTACCCTTGTGTTGTC
GAGATTCACTCGTGGCGCCCTTTTTCACATACAACCTACATATTATACCG
CCACCTTGTTGCAGGTTCAACCGACATTCGATTGTTCTTCCTCATTGCTG
CAAATATTTTGAGGACCCTGATGATATCGCCGCAAAAGGGGATCCAGAAA
GTGATTAAACTGGTGCAAAAATAGGGAGTTAGATAGTAATCGAAATGGTG
AAAGAGGGGACCCAGATAGTGATTGTGCCAGAACGTTATGCAAAATTACA
CCCCATTCTCACAGactcactggctgaaaaaaatccttCCCCTGTGAGAA
GGGGGTCCAAATCGGACCTAAGAAATTACTGAATACTTTAAATAAAGGAA
GCGCGGAAAGTGATCATATCGTGAAACATGAGCCGTTATAAACGTTAGGT
GGAAGTTGAACAACGTAGCAAAGAAGTCCAACTGTCTATTAGTCATGTgc
taaaggttcaatctcaaaataagtgtcttggaAGATTGCGATTCTGTTCT
GCCTTTGGGATTGGTctttttgtcatatgaaaacATTGAATGTTCCTGTA
CATGAAAAAagggcaatctcaatctcaaagatgaccacTACAGTAAAACT
ATATAGCTTTTGTAAGctactaattttgagattgaacctttagtcatgtg
aacGACACTATGAAGGACATGAAGGAATACCACGGTCAATAATTATTGAT
GTGCACCCACTgagaacaaactttttgaattgGTATATTTTCTACAACAA
GGATATAGGAGGATGGATGGAGAGAAGATGCATTGCTGCCACGGTAAAAG
GAGTCGTTGAGACGGATTGTTTAGAAGTTGTGTTCACGAGATCCCAAGTT
AGCAcagaacgttgtttcaacgtttatttaacgttcacagcGTCCATATA
ACTTtatagatgaacgttgaaacaacgttgggGTGAAAGTTGAAGATTTC
CTAATATTTGAGTGTCATAGATACAGAACtaactattaactttttattAG
GATTTTTAGTAAGGTTGTAGATTTTTGGCTACaagaattttttaatattt
caaaaaatattgctgctttTAAGAATTAGAGACTATGAGAACGCTAGTAT
GAGTAAAAAAAAT Coding sequence (CDS) from alignment at scaffold_451:376510..379472+ >TCONS_00066134 ID=TCONS_00066134|Name=TCONS_00066134|organism=Clytia hemisphaerica|type=CDS|length=1998bp|location=Sequence derived from alignment at scaffold_451:376510..379472+ (Clytia hemisphaerica)
ATGTTCTTACATGTTGCATTGATGCTGATTTTATCAACAGGCTGTTTTGC
TGAAAACTCGACTCTCAGCGATGATGTTGCTCAGACTCGTCAAAACAGCA
CATGGTATGGTGACTTCAACCAAACAAAGCCCATCGAAATCCAACATCTG
AATGGAACATCAGCAAACATCAGTATTGCCAGCAAAGCTTCATCTAAAGA
GCAAAACGTTACCATCAATTCTTTATCTAAAGATGAAACCAAGACAAATT
CAACAAACGACATTATCAAAGCATTCTCAAATTTCACTTTGACAAATTCA
AGTTTAATCAACGAGACTGATAATGGTGTTGAAACCGTTGACAATTCTAG
TGGAGATAACGTCAATTTAAATGGTAATCCGTTGAATCAAACTGTAGCAG
AATATACAGGAGATAATAATTTAAACGAAACTATGGAAGGTGTAAAACAA
ACTATATCAGGAGAAAAAGTAGAGAGCGAATCTCCGGAGAGCGAATCAGC
TATCTTCGGTAATCTAATGGACCAAACAGACGTTGTTAGTATAAAAAATA
TCCACAAATTGTTTAAACCATTAACACGAAATCAAATTTCTTCCCCATAT
ATCTATGCTTCTGAACCTAAACAAGGCTGGAAAGAGCTCCATAACCCAAA
GTCCTTTCGAAGCAAACcaacttctttttcaaattcacaACAACAAGGAG
AGAAAAACATCATGatacaagaatcgcaaaataaGAAACCAAATTATAAC
AAAAAGAAACTAACCCATAAGCAAAGAAAGAATAAGAGTCACcagatatc
atattttcaaccCACAATGAAATGGCTACCCTTGTGTTGTCGAGATTCAC
TCGTGGCGCCCTTTTTCACATACAACCTACATATTATACCGCCACCTTGT
TGCAGGTTCAACCGACATTCGATTGTTCTTCCTCATTGCTGCAAATATTT
TGAGGACCCTGATGATATCGCCGCAAAAGGGGATCCAGAAAGTGATTAAA
TGTTCTTACATGTTGCATTGATGCTGATTTTATCAACAGGCTGTTTTGCT
GAAAACTCGACTCTCAGCGATGATGTTGCTCAGACTCGTCAAAACAGCAC
ATGGTATGGTGACTTCAACCAAACAAAGCCCATCGAAATCCAACATCTGA
ATGGAACATCAGCAAACATCAGTATTGCCAGCAAAGCTTCATCTAAAGAG
CAAAACGTTACCATCAATTCTTTATCTAAAGATGAAACCAAGACAAATTC
AACAAACGACATTATCAAAGCATTCTCAAATTTCACTTTGACAAATTCAA
GTTTAATCAACGAGACTGATAATGGTGTTGAAACCGTTGACAATTCTAGT
GGAGATAACGTCAATTTAAATGGTAATCCGTTGAATCAAACTGTAGCAGA
ATATACAGGAGATAATAATTTAAACGAAACTATGGAAGGTGTAAAACAAA
CTATATCAGGAGAAAAAGTAGAGAGCGAATCTCCGGAGAGCGAATCAGCT
ATCTTCGGTAATCTAATGGACCAAACAGACGTTGTTAGTATAAAAAATAT
CCACAAATTGTTTAAACCATTAACACGAAATCAAATTTCTTCCCCATATA
TCTATGCTTCTGAACCTAAACAAGGCTGGAAAGAGCTCCATAACCCAAAG
TCCTTTCGAAGCAAACcaacttctttttcaaattcacaACAACAAGGAGA
GAAAAACATCATGatacaagaatcgcaaaataaGAAACCAAATTATAACA
AAAAGAAACTAACCCATAAGCAAAGAAAGAATAAGAGTCACcagatatca
tattttcaaccCACAATGAAATGGCTACCCTTGTGTTGTCGAGATTCACT
CGTGGCGCCCTTTTTCACATACAACCTACATATTATACCGCCACCTTGTT
GCAGGTTCAACCGACATTCGATTGTTCTTCCTCATTGCTGCAAATATTTT
GAGGACCCTGATGATATCGCCGCAAAAGGGGATCCAGAAAGTGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066134-exon-scaffold_451-1491911889:376510..376807 | TCONS_00066134-exon-scaffold_451-1491911889:376510..376807 | Clytia hemisphaerica | exon |
| TCONS_00066134-exon-scaffold_451-1510915933:376510..376807 | TCONS_00066134-exon-scaffold_451-1510915933:376510..376807 | Clytia hemisphaerica | exon |
| TCONS_00066134-exon-scaffold_451-1575043694:376510..376807 | TCONS_00066134-exon-scaffold_451-1575043694:376510..376807 | Clytia hemisphaerica | exon |
| TCONS_00066134-exon-scaffold_451-1491911889:377559..379472 | TCONS_00066134-exon-scaffold_451-1491911889:377559..379472 | Clytia hemisphaerica | exon |
| TCONS_00066134-exon-scaffold_451-1510915933:377559..379472 | TCONS_00066134-exon-scaffold_451-1510915933:377559..379472 | Clytia hemisphaerica | exon |
| TCONS_00066134-exon-scaffold_451-1575043694:377559..379472 | TCONS_00066134-exon-scaffold_451-1575043694:377559..379472 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:376510..379472 + |
Blast
The following BLAST results are available for this feature:
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