TCONS_00066127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066127
Unique NameTCONS_00066127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1141

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066127 ID=TCONS_00066127|Name=TCONS_00066127|organism=Clytia hemisphaerica|type=transcript|length=1141bp
ATATGATTACGTCATAATAGAGATCCTTTCAAAAGATAATTTGCAGCACC
ATGACGAACACACCGTGCCCAGGATTTCATGCACCGCCGGCCCTGTCCGT
ATTCACATCGGTTGTTTCCGCTGTTTTATGCATCTTGACTGTAATCGGAA
ATCTCCTGGTTTGTTTAGCCGTTTTGAAAGATCCACAACGAAAATTACGA
ACACCATTCATGTTTATTATCGTGAATCTGGCCATTACTGACCTCATTGT
TGGCATAGTAACGCTACCGATATCTGTGGTCACACATGCTTTAGAAGCCG
TTGATAAAAAGACAAATGATTACGTCACTGTTAGTCGAATGTTTTATTTC
GTCACTGTAACAGCAAGTACTTTTAATTTGATTGCGTTTTGTATCGATAG
ATTTGTAGCAGTATCGAATCCAATAAAATATCGACAAATAATGCGATTTA
AGATTTGCGTATTCTTAGTAGCATTGATTTGGCTGTTATCGATTGGAATC
GCATGTATTTATTTGGCTGTCGGTTATATCGATTTTATTATCTTTTTCGC
TCAAATCTCAATGGCGTTAGTGTTAGTAATGTGTGCTATAACGGTTAGAT
TATTATGTATGCTGAATTTAAAAGCAAAGAAACGTCGTAAACTTACGTCG
TCACATTCCCGTTTACAGAACGAACGTGTTACCGTGTTATTTCTCACGTT
TTTGATCACGTTTCTGTTATGTAACACGCCAGCTATTGTCATGATGtatt
tgatcaaattttacACGACCATGGACTGTACTGTTCGACATGTTATACGA
GATTTATCATTCCTATTTGTCGTTTCAAACTCAGCGCTTAATCCTTTATT
CTGTACTATAAGACTTAAACCGTTTAACCAAGccattaaaatcattttca
actaTAAAGCTGAAGGAATTGAATCTCCACTTTATGGCAGGAATGGATCA
TCTCACAGACGCAGTGATGCAATGAGACGGAAGTCGAGTGAGAAAAGTAT
TTTattggagaaaaaaaagttgCAGAAGTCATCAACTTTGAAAGCTTGAT
ATGTGTTATCGTTCGATTGTGAATTTTTGGACGAGatttttattcattat
tttctttattaaCGACGTAGGAGGGACTTGATCTGATGCCG
Run BLAST on NCBI

protein sequence of Seven transmembrane protein

>TCONS_00066127-protein ID=TCONS_00066127-protein|Name=Seven transmembrane protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MTNTPCPGFHAPPALSVFTSVVSAVLCILTVIGNLLVCLAVLKDPQRKLR
TPFMFIIVNLAITDLIVGIVTLPISVVTHALEAVDKKTNDYVTVSRMFYF
VTVTASTFNLIAFCIDRFVAVSNPIKYRQIMRFKICVFLVALIWLLSIGI
ACIYLAVGYIDFIIFFAQISMALVLVMCAITVRLLCMLNLKAKKRRKLTS
SHSRLQNERVTVLFLTFLITFLLCNTPAIVMMYLIKFYTTMDCTVRHVIR
DLSFLFVVSNSALNPLFCTIRLKPFNQAIKIIFNYKAEGIESPLYGRNGS
SHRRSDAMRRKSSEKSILLEKKKLQKSSTLKA
Run BLAST on NCBI

transcript from alignment at scaffold_451:188762..191187+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066127 ID=TCONS_00066127|Name=TCONS_00066127|organism=Clytia hemisphaerica|type=transcript|length=2426bp|location=Sequence derived from alignment at scaffold_451:188762..191187+ (Clytia hemisphaerica)
ATATGATTACGTCATAATAGAGATCCTTTCAAAAGGTAGTAAGATGATGT
CATAATACGTCATATGTATATTTTACGGAAAGAAAGTCATTTTGACAGCA
TGAGAACTACTTCAGGCAGACAGTATGTGTTCTTTAGTCCTCAGTGTGTG
TTTTGATTTAGTATAAAGAAACGTGAAACCAGCGTGTTACAGGAAGGAAG
AGGCtgaacttaatttttgcaaatATATATAATGttgaatttgatacatt
ttgaatttcaattttcttatttctatACTGATTGTATCACTTGTATCAGA
TATCACTGTTACAGATTCGCTTTTGAAAATAGCTTGATTGATGAGTTTCT
TGGGCTGGATTTCGACGTGTCAGACAAAACGGGATTCCTTTTAGCGGGTA
TTATAGTAGTTAGTCACATTGGCAAATAGTCAGTAAAACATGAGGTCACA
TACTGTATTCTAGAGAAAATTCAAACATATGGCATTTTCATAGATCTATT
GCCTGGAACCTAACTAACCTAACTTTACCTAACTTTACCTATTATAGCAG
TTAGTCAGTCACATTGACAAATAGTCGGTGAGATTTTTAAAACATGAGGT
CACAGgctatatctcggagaaaatcCTGTAGCATTTTCTTAAGCTTATCA
CCAGCCTGGAACCTAGACTCACCTACCTTTCTACAGCTACAATCTAAATT
AATCTGGAGGAGGGGCTGGAGATTTTGAGTAATTCACATACAAAACGGTG
TTTTAAAAAGAACGTTATATTTAAGCGTTTAGTGTAGTTCAGTTTGTCCT
AAACGTCTGGTTTTGTCTAGTAGATGGAATGATATTTAGAATAACTTCAT
TTCCAGCAGGGAGTTTAAAACAAGTTTGATACAGAGGGGTATAACCACCG
TTGAGGTTCAACAAAACATCCCTGTcttacagccccggtggaactttttt
ttctcagtcgggataaaaattcctattgaaatcccgatGGGAATAGAACA
ATTATTGTTTCATAGTTAAAAGATGCAATAGGGATGGTTTTGTTGTAAAA
TCTTGTGaagcattgaatttcgaatgggcataaaatcaaaatcaatttgc
CAGTGGTGCTGAAAACCCCGGGTATTTTGCCACCACGGACAAAATCTTCT
TTCATTGGGGTAGGGGTTTAAGcgagtctgtgacacagggatgtatCTGA
TATATTCAGTTAAATTCAAATTGGTGTTTGGTCGCTGTAGAGTTTTTCAA
TCTATGGTTCTGAATGGTTAAGATTGAATATttccactttcactttcttt
atCTATTTCTTGTTATTTAGATAATTTGCAGCACCATGACGAACACACCG
TGCCCAGGATTTCATGCACCGCCGGCCCTGTCCGTATTCACATCGGTTGT
TTCCGCTGTTTTATGCATCTTGACTGTAATCGGAAATCTCCTGGTTTGTT
TAGCCGTTTTGAAAGATCCACAACGAAAATTACGAACACCATTCATGTTT
ATTATCGTGAATCTGGCCATTACTGACCTCATTGTTGGCATAGTAACGCT
ACCGATATCTGTGGTCACACATGCTTTAGAAGCCGTTGATAAAAAGACAA
ATGATTACGTCACTGTTAGTCGAATGTTTTATTTCGTCACTGTAACAGCA
AGTACTTTTAATTTGATTGCGTTTTGTATCGATAGATTTGTAGCAGTATC
GAATCCAATAAAATATCGACAAATAATGCGATTTAAGATTTGCGTATTCT
TAGTAGCATTGATTTGGCTGTTATCGATTGGAATCGCATGTATTTATTTG
GCTGTCGGTTATATCGATTTTATTATCTTTTTCGCTCAAATCTCAATGGC
GTTAGTGTTAGTAATGTGTGCTATAACGGTTAGATTATTATGTATGCTGA
ATTTAAAAGCAAAGAAACGTCGTAAACTTACGTCGTCACATTCCCGTTTA
CAGAACGAACGTGTTACCGTGTTATTTCTCACGTTTTTGATCACGTTTCT
GTTATGTAACACGCCAGCTATTGTCATGATGtatttgatcaaattttacA
CGACCATGGACTGTACTGTTCGACATGTTATACGAGATTTATCATTCCTA
TTTGTCGTTTCAAACTCAGCGCTTAATCCTTTATTCTGTACTATAAGACT
TAAACCGTTTAACCAAGccattaaaatcattttcaactaTAAAGCTGAAG
GAATTGAATCTCCACTTTATGGCAGGAATGGATCATCTCACAGACGCAGT
GATGCAATGAGACGGAAGTCGAGTGAGAAAAGTATTTTattggagaaaaa
aaagttgCAGAAGTCATCAACTTTGAAAGCTTGATATGTGTTATCGTTCG
ATTGTGAATTTTTGGACGAGatttttattcattattttctttattaaCGA
CGTAGGAGGGACTTGATCTGATGCCG

Coding sequence (CDS) from alignment at scaffold_451:188762..191187+

>TCONS_00066127 ID=TCONS_00066127|Name=TCONS_00066127|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_451:188762..191187+ (Clytia hemisphaerica)
ATGACGAACACACCGTGCCCAGGATTTCATGCACCGCCGGCCCTGTCCGT
ATTCACATCGGTTGTTTCCGCTGTTTTATGCATCTTGACTGTAATCGGAA
ATCTCCTGGTTTGTTTAGCCGTTTTGAAAGATCCACAACGAAAATTACGA
ACACCATTCATGTTTATTATCGTGAATCTGGCCATTACTGACCTCATTGT
TGGCATAGTAACGCTACCGATATCTGTGGTCACACATGCTTTAGAAGCCG
TTGATAAAAAGACAAATGATTACGTCACTGTTAGTCGAATGTTTTATTTC
GTCACTGTAACAGCAAGTACTTTTAATTTGATTGCGTTTTGTATCGATAG
ATTTGTAGCAGTATCGAATCCAATAAAATATCGACAAATAATGCGATTTA
AGATTTGCGTATTCTTAGTAGCATTGATTTGGCTGTTATCGATTGGAATC
GCATGTATTTATTTGGCTGTCGGTTATATCGATTTTATTATCTTTTTCGC
TCAAATCTCAATGGCGTTAGTGTTAGTAATGTGTGCTATAACGGTTAGAT
TATTATGTATGCTGAATTTAAAAGCAAAGAAACGTCGTAAACTTACGTCG
TCACATTCCCGTTTACAGAACGAACGTGTTACCGTGTTATTTCTCACGTT
TTTGATCACGTTTCTGTTATGTAACACGCCAGCTATTGTCATGATGtatt
tgatcaaattttacACGACCATGGACTGTACTGTTCGACATGTTATACGA
GATTTATCATTCCTATTTGTCGTTTCAAACTCAGCGCTTAATCCTTTATT
CTGTACTATAAGACTTAAACCGTTTAACCAAGccattaaaatcattttca
actaTAAAGCTGAAGGAATTGAATCTCCACTTTATGGCAGGAATGGATCA
TCTCACAGACGCAGTGATGCAATGAGACGGAAGTCGAGTGAGAAAAGTAT
TTTattggagaaaaaaaagttgCAGAAGTCATCAACTTTGAAAGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041400XLOC_041400Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Seven transmembrane proteinTCONS_00066127-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066127-exon-scaffold_451-1491911889:188762..188796TCONS_00066127-exon-scaffold_451-1491911889:188762..188796Clytia hemisphaericaexon
TCONS_00066127-exon-scaffold_451-1510915933:188762..188796TCONS_00066127-exon-scaffold_451-1510915933:188762..188796Clytia hemisphaericaexon
TCONS_00066127-exon-scaffold_451-1575043694:188762..188796TCONS_00066127-exon-scaffold_451-1575043694:188762..188796Clytia hemisphaericaexon
TCONS_00066127-exon-scaffold_451-1491911889:190082..191187TCONS_00066127-exon-scaffold_451-1491911889:190082..191187Clytia hemisphaericaexon
TCONS_00066127-exon-scaffold_451-1510915933:190082..191187TCONS_00066127-exon-scaffold_451-1510915933:190082..191187Clytia hemisphaericaexon
TCONS_00066127-exon-scaffold_451-1575043694:190082..191187TCONS_00066127-exon-scaffold_451-1575043694:190082..191187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:188762..191187 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.55044	2.83027	1.20682	1.51335e-07	0	0	8.81233e-07	4.62746	2.7266	3.06424	2.78754	1.40563	1.29404e-08	6.6563e-10	3.017e-09	2.69284e-09	1.05732	1.31803	2.05295e-07	2.1172	4.83565e-08	2.96208	2.48782	3.08096	8.13218e-08	6.18273e-08	9.14969e-09	1.54976e-08	11.9147	11.0158
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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