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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066126 ID=TCONS_00066126|Name=TCONS_00066126|organism=Clytia hemisphaerica|type=transcript|length=1129bp
TTTTTATCTAGTTTTCAATCTATATAATTTGCAGCACCATGACGAACACA
CCGTGCCCAGGATTTCATGCACCGCCGGCCCTGTCCGTATTCACATCGGT
TGTTTCCGCTGTTTTATGCATCTTGACTGTAATCGGAAATCTCCTGGTTT
GTTTAGCCGTTTTGAAAGATCCACAACGAAAATTACGAACACCATTCATG
TTTATTATCGTGAATCTGGCCATTACTGACCTCATTGTTGGCATAGTAAC
GCTACCGATATCTGTGGTCACACATGCTTTAGAAGCCGTTGATAAAAAGA
CAAATGATTACGTCACTGTTAGTCGAATGTTTTATTTCGTCACTGTAACA
GCAAGTACTTTTAATTTGATTGCGTTTTGTATCGATAGATTTGTAGCAGT
ATCGAATCCAATAAAATATCGACAAATAATGCGATTTAAGATTTGCGTAT
TCTTAGTAGCATTGATTTGGCTGTTATCGATTGGAATCGCATGTATTTAT
TTGGCTGTCGGTTATATCGATTTTATTATCTTTTTCGCTCAAATCTCAAT
GGCGTTAGTGTTAGTAATGTGTGCTATAACGGTTAGATTATTATGTATGC
TGAATTTAAAAGCAAAGAAACGTCGTAAACTTACGTCGTCACATTCCCGT
TTACAGAACGAACGTGTTACCGTGTTATTTCTCACGTTTTTGATCACGTT
TCTGTTATGTAACACGCCAGCTATTGTCATGATGtatttgatcaaatttt
acACGACCATGGACTGTACTGTTCGACATGTTATACGAGATTTATCATTC
CTATTTGTCGTTTCAAACTCAGCGCTTAATCCTTTATTCTGTACTATAAG
ACTTAAACCGTTTAACCAAGccattaaaatcattttcaactaTAAAGCTG
AAGGAATTGAATCTCCACTTTATGGCAGGAATGGATCATCTCACAGACGC
AGTGATGCAATGAGACGGAAGTCGAGTGAGAAAAGTATTTTattggagaa
aaaaaagttgCAGAAGTCATCAACTTTGAAAGCTTGATATGTGTTATCGT
TCGATTGTGAATTTTTGGACGAGatttttattcattattttctttattaa
CGACGTAGGAGGGACTTGATCTGATGCCG Run BLAST on NCBI transcript from alignment at scaffold_451:188453..191187+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066126 ID=TCONS_00066126|Name=TCONS_00066126|organism=Clytia hemisphaerica|type=transcript|length=2735bp|location=Sequence derived from alignment at scaffold_451:188453..191187+ (Clytia hemisphaerica)
TTTTTATCTAGTTTTCAATCTATGTGggtgtttttttgaatttcttttcc
gTTATAATTTTTTAGCCACGATAAATTTTATTTCCATTGGACTATCACCT
TTCTTTTATAAGTTATACAAGAAAGATTCATTTCGAAGCATGTAGTTCTC
AAGAGAAAATTTTCCACTGAAAATGATATAGACTGGATTTACGTTGAACA
AATACTAATAAatctctctcttattcgattatTGAGAGGCTTAGAGAATT
TTACTCGATTTATAGAGCATTCTTTTgaggatttttgaaatttgagctCT
TTACGATTGATATGATTACGTCATAATAGAGATCCTTTCAAAAGGTAGTA
AGATGATGTCATAATACGTCATATGTATATTTTACGGAAAGAAAGTCATT
TTGACAGCATGAGAACTACTTCAGGCAGACAGTATGTGTTCTTTAGTCCT
CAGTGTGTGTTTTGATTTAGTATAAAGAAACGTGAAACCAGCGTGTTACA
GGAAGGAAGAGGCtgaacttaatttttgcaaatATATATAATGttgaatt
tgatacattttgaatttcaattttcttatttctatACTGATTGTATCACT
TGTATCAGATATCACTGTTACAGATTCGCTTTTGAAAATAGCTTGATTGA
TGAGTTTCTTGGGCTGGATTTCGACGTGTCAGACAAAACGGGATTCCTTT
TAGCGGGTATTATAGTAGTTAGTCACATTGGCAAATAGTCAGTAAAACAT
GAGGTCACATACTGTATTCTAGAGAAAATTCAAACATATGGCATTTTCAT
AGATCTATTGCCTGGAACCTAACTAACCTAACTTTACCTAACTTTACCTA
TTATAGCAGTTAGTCAGTCACATTGACAAATAGTCGGTGAGATTTTTAAA
ACATGAGGTCACAGgctatatctcggagaaaatcCTGTAGCATTTTCTTA
AGCTTATCACCAGCCTGGAACCTAGACTCACCTACCTTTCTACAGCTACA
ATCTAAATTAATCTGGAGGAGGGGCTGGAGATTTTGAGTAATTCACATAC
AAAACGGTGTTTTAAAAAGAACGTTATATTTAAGCGTTTAGTGTAGTTCA
GTTTGTCCTAAACGTCTGGTTTTGTCTAGTAGATGGAATGATATTTAGAA
TAACTTCATTTCCAGCAGGGAGTTTAAAACAAGTTTGATACAGAGGGGTA
TAACCACCGTTGAGGTTCAACAAAACATCCCTGTcttacagccccggtgg
aacttttttttctcagtcgggataaaaattcctattgaaatcccgatGGG
AATAGAACAATTATTGTTTCATAGTTAAAAGATGCAATAGGGATGGTTTT
GTTGTAAAATCTTGTGaagcattgaatttcgaatgggcataaaatcaaaa
tcaatttgcCAGTGGTGCTGAAAACCCCGGGTATTTTGCCACCACGGACA
AAATCTTCTTTCATTGGGGTAGGGGTTTAAGcgagtctgtgacacaggga
tgtatCTGATATATTCAGTTAAATTCAAATTGGTGTTTGGTCGCTGTAGA
GTTTTTCAATCTATGGTTCTGAATGGTTAAGATTGAATATttccactttc
actttctttatCTATTTCTTGTTATTTAGATAATTTGCAGCACCATGACG
AACACACCGTGCCCAGGATTTCATGCACCGCCGGCCCTGTCCGTATTCAC
ATCGGTTGTTTCCGCTGTTTTATGCATCTTGACTGTAATCGGAAATCTCC
TGGTTTGTTTAGCCGTTTTGAAAGATCCACAACGAAAATTACGAACACCA
TTCATGTTTATTATCGTGAATCTGGCCATTACTGACCTCATTGTTGGCAT
AGTAACGCTACCGATATCTGTGGTCACACATGCTTTAGAAGCCGTTGATA
AAAAGACAAATGATTACGTCACTGTTAGTCGAATGTTTTATTTCGTCACT
GTAACAGCAAGTACTTTTAATTTGATTGCGTTTTGTATCGATAGATTTGT
AGCAGTATCGAATCCAATAAAATATCGACAAATAATGCGATTTAAGATTT
GCGTATTCTTAGTAGCATTGATTTGGCTGTTATCGATTGGAATCGCATGT
ATTTATTTGGCTGTCGGTTATATCGATTTTATTATCTTTTTCGCTCAAAT
CTCAATGGCGTTAGTGTTAGTAATGTGTGCTATAACGGTTAGATTATTAT
GTATGCTGAATTTAAAAGCAAAGAAACGTCGTAAACTTACGTCGTCACAT
TCCCGTTTACAGAACGAACGTGTTACCGTGTTATTTCTCACGTTTTTGAT
CACGTTTCTGTTATGTAACACGCCAGCTATTGTCATGATGtatttgatca
aattttacACGACCATGGACTGTACTGTTCGACATGTTATACGAGATTTA
TCATTCCTATTTGTCGTTTCAAACTCAGCGCTTAATCCTTTATTCTGTAC
TATAAGACTTAAACCGTTTAACCAAGccattaaaatcattttcaactaTA
AAGCTGAAGGAATTGAATCTCCACTTTATGGCAGGAATGGATCATCTCAC
AGACGCAGTGATGCAATGAGACGGAAGTCGAGTGAGAAAAGTATTTTatt
ggagaaaaaaaagttgCAGAAGTCATCAACTTTGAAAGCTTGATATGTGT
TATCGTTCGATTGTGAATTTTTGGACGAGatttttattcattattttctt
tattaaCGACGTAGGAGGGACTTGATCTGATGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066126-exon-scaffold_451-1491911889:188453..188475 | TCONS_00066126-exon-scaffold_451-1491911889:188453..188475 | Clytia hemisphaerica | exon |
| TCONS_00066126-exon-scaffold_451-1510915933:188453..188475 | TCONS_00066126-exon-scaffold_451-1510915933:188453..188475 | Clytia hemisphaerica | exon |
| TCONS_00066126-exon-scaffold_451-1575043694:188453..188475 | TCONS_00066126-exon-scaffold_451-1575043694:188453..188475 | Clytia hemisphaerica | exon |
| TCONS_00066126-exon-scaffold_451-1491911889:190082..191187 | TCONS_00066126-exon-scaffold_451-1491911889:190082..191187 | Clytia hemisphaerica | exon |
| TCONS_00066126-exon-scaffold_451-1510915933:190082..191187 | TCONS_00066126-exon-scaffold_451-1510915933:190082..191187 | Clytia hemisphaerica | exon |
| TCONS_00066126-exon-scaffold_451-1575043694:190082..191187 | TCONS_00066126-exon-scaffold_451-1575043694:190082..191187 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:188453..191187 + |
Blast
The following BLAST results are available for this feature:
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