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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066124 ID=TCONS_00066124|Name=TCONS_00066124|organism=Clytia hemisphaerica|type=transcript|length=1315bp
ATATTATCGTAAAATACGATATTTCCTTTTTCAAGCTgagacttaatttt
tttttaaagctgtGACCCTTCatcatttcaaaaatgaatctttttatcaa
agttttAGTTGTTGGTACTGTTTTCATTCCATTCGtATCATCCCTAATCT
GTCCGAAATGCAACAGTGCAACGTCCTGGTCACACTGCACGGAGAATCAA
GTCAACCATGATTGTGGAAGTTTAGTCAACAAAACTTGTGCTAGCGTCAA
GATGATTCGCAACTTGGAGAAAGTATATCAAAAAGAATGTACCTTGATTG
ATCGCTGTACGAAAGAAGCTTATTGTGGAAGTGATACACAAAATTGCGAG
ATTTCATGCTGTCAGACCGACCATTGCACTTCAAACGCAATCCAAAACGG
ATTCAATATGTTGCTTGTTACCATGGCTACAGTTTTCTCCGCGTGGAAAc
tgtttcaattttgaattcatcGATCCCGCACTCAATTTTATTTAGATCTA
GATATAAATCTGTAACATGGTATGAATACAAAGTACACTAGCTCCTGTAC
CTTTGTCCGTTGGTTTGTGAAACCTTTCGAGGAGCAgatcaaatttacaa
atttttataACCATATACGACTTTATGCAATTCATAATTAATGACGTAAT
TTCTTTCTATCATGACTTTATCTTTtggtttaatgttttttttataagaa
caaattatataaaaaaacataagcttccatggccaaaatatcaagaacaa
gttaagaacattttaaggctttgctggcTCTAAAATactcgatttcttag
aaaaatggccaaaaatgctcacaaaatggtgaaaataagaacatgttaag
aatatttttggatgttcttataagatgattttgataataattttataaga
aagtgTAATTGAGGTAGTCCGTGTATGTTCTTAAATTCCAACCGTCCAtt
gtatacaccttttcgaccgtagccgccaattgccgcgcgggcattttttt
gtctgctttatcccactaaaaccgtcccagtcctttttttacacctatag
acaatagaaaaatatgtCATAAAAGGTTTGTATcgagtttagtgggataa
aatTATATTGggacgcgcctgaccgcgcgactacggccAAAAAGGTTGTA
TTGAATTATTGAATTTCTCTCTTCACTATGTTTTAcagtttttcatttct
ttttccgAAAATGATCTAGCATTCTGgattctgaaaattttgatgttttt
ttaagtACACGCACACTGAGAGAAATAAGACATTCTTTTGCAAAGAAACA
TCACATGAACATGAA Run BLAST on NCBI protein sequence of TCONS_00066124-protein >TCONS_00066124-protein ID=TCONS_00066124-protein|Name=TCONS_00066124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MNLFIKVLVVGTVFIPFVSSLICPKCNSATSWSHCTENQVNHDCGSLVNK
TCASVKMIRNLEKVYQKECTLIDRCTKEAYCGSDTQNCEISCCQTDHCTS
NAIQNGFNMLLVTMATVFSAWKLFQF Run BLAST on NCBI transcript from alignment at scaffold_451:162842..165416+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066124 ID=TCONS_00066124|Name=TCONS_00066124|organism=Clytia hemisphaerica|type=transcript|length=2575bp|location=Sequence derived from alignment at scaffold_451:162842..165416+ (Clytia hemisphaerica)
ATATTATCGTAAAATACGATATTTCCTTTTTCAAGCTgagacttaatttt
tttttaaagctgtGACCCTTCatcatttcaaaaatgaatctttttatcaa
agttttAGTTGTTGGTACTGTTTTCATTCCATTCGGTAAGTTCGTATACC
GAAGGGCTCAATTTCCACGCTCTGGAAAGTCTCTTTAGAAAAGGGTTAAA
CAAATTACGTGTCCCCGTGTTTATTTTTCTAACTGTAATTTCGAACTGAA
AACGAAACCGATACTTCGATTGGTTGGAGATCACAGTGTAACTGAGAAAA
AGGCTTTTTTGTAGATATCGGGGTGAGTAAGTTTTTAGCTCACCCTCTTC
TTAGATAGATAGGACTATAtctatttttacaattttcagtATCATCCCTA
ATCTGTCCGAAATGCAACAGTGCAACGTCCTGGTCACACTGCACGGAGAA
TCAAGTCAACCATGATTGTGGAAGTTTAGTCAACAAAACTTGTGCTAGCG
TCAAGATGATTCGCAACTTGGAGAAAGTATATCAAAAAGAATGTACCTTG
ATTGATCGCTGTACGAAAGAAGCTTATTGTGGAAGTGATACACAAAATTG
CGAGGTAATTAAACAGCCAGAgcaactcgaacccagtcctttTGTTCGCT
TTTTCTATGATTGTACCAACGTCAATCAATAAACTCAAAATGTGTGAAAG
CGGCTCTAGGTACAAGATTGCTAAGCATGCACTCAAGGGTTTTTAACATT
GCCTTTTTTAGTGTGCTACACCAATCATCAAAgtcaaaaagtaaaacaaa
gaGCCAAACACCATAGAACTAATTAAGATGGACACACGAATTAGGTTGCC
TGCATCCCTTTAATATTGTTCCCATATGTGTAGCCTAATACTTGTAATTA
TTCATACTAACTAGGGGTCGTAGTATCTTACCCTACGATGTTTTGCCTTT
ACTGATGGGCATACCATACCAATAACAGAGAAAAGTCTTTATCAACACCG
atgtatttttaaatttatggTCATGTTggtaatgggcttttccagaaata
ttccGTGCCCCCTGTTGATGATATCggatgtccagggggttaacgatttt
tgttcaaaaataatATCGCGTTGTGTTGGTGGGTNGTCCGTGCCCCCCTG
TTGATGATATCggatgtccagggggttaacgatttttgttcaaaaatgat
ATCGCGTTGTGTTGGTTGGTAATTTCGTACCCAGCCTCCCTCGCAACACT
TTCTTATTTTacgggtcaagctggagttttcaCAAGGTTTTCGATGGTTC
GGTTGGTCGTTGAATcttgagacaaaggattttattgctttttctaaaga
acgcgtcatctctactATTTCAAATGACcgattagtgaagtatcttataa
agactccagctcatccctatTTTACCGGTGGACGTCAAAATCATGAGCGC
TAACAGCAccattaaaaatgaaataaggtAATGGACCTGAGTGTGGATGT
TGGGTCATTATTCTTACATTGTAGAatatgaaaattcaatttttaggtGG
AGATACCTATGTTATTTGAAGATCATCGTaatcatacattttcttctttt
ttatcttCAGATTTCATGCTGTCAGACCGACCATTGCACTTCAAACGCAA
TCCAAAACGGATTCAATATGTTGCTTGTTACCATGGCTACAGTTTTCTCC
GCGTGGAAActgtttcaattttgaattcatcGATCCCGCACTCAATTTTA
TTTAGATCTAGATATAAATCTGTAACATGGTATGAATACAAAGTACACTA
GCTCCTGTACCTTTGTCCGTTGGTTTGTGAAACCTTTCGAGGAGCAgatc
aaatttacaaatttttataACCATATACGACTTTATGCAATTCATAATTA
ATGACGTAATTTCTTTCTATCATGACTTTATCTTTtggtttaatgttttt
tttataagaacaaattatataaaaaaacataagcttccatggccaaaata
tcaagaacaagttaagaacattttaaggctttgctggcTCTAAAATactc
gatttcttagaaaaatggccaaaaatgctcacaaaatggtgaaaataaga
acatgttaagaatatttttggatgttcttataagatgattttgataataa
ttttataagaaagtgTAATTGAGGTAGTCCGTGTATGTTCTTAAATTCCA
ACCGTCCAttgtatacaccttttcgaccgtagccgccaattgccgcgcgg
gcatttttttgtctgctttatcccactaaaaccgtcccagtccttttttt
acacctatagacaatagaaaaatatgtCATAAAAGGTTTGTATcgagttt
agtgggataaaatTATATTGggacgcgcctgaccgcgcgactacggccAA
AAAGGTTGTATTGAATTATTGAATTTCTCTCTTCACTATGTTTTAcagtt
tttcatttctttttccgAAAATGATCTAGCATTCTGgattctgaaaattt
tgatgtttttttaagtACACGCACACTGAGAGAAATAAGACATTCTTTTG
CAAAGAAACATCACATGAACATGAA Coding sequence (CDS) from alignment at scaffold_451:162842..165416+ >TCONS_00066124 ID=TCONS_00066124|Name=TCONS_00066124|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_451:162842..165416+ (Clytia hemisphaerica)
atgaatctttttatcaaagttttAGTTGTTGGTACTGTTTTCATTCCATT
CGtATCATCCCTAATCTGTCCGAAATGCAACAGTGCAACGTCCTGGTCAC
ACTGCACGGAGAATCAAGTCAACCATGATTGTGGAAGTTTAGTCAACAAA
ACTTGTGCTAGCGTCAAGATGATTCGCAACTTGGAGAAAGTATATCAAAA
AGAATGTACCTTGATTGATCGCTGTACGAAAGAAGCTTATTGTGGAAGTG
ATACACAAAATTGCGAGATTTCATGCTGTCAGACCGACCATTGCACTTCA
AACGCAATCCAAAACGGATTCAATATGTTGCTTGTTACCATGGCTACAGT
TTTCTCCGCGTGGAAActgtttcaattttgaatgaatctttttatcaaag
ttttAGTTGTTGGTACTGTTTTCATTCCATTCGtATCATCCCTAATCTGT
CCGAAATGCAACAGTGCAACGTCCTGGTCACACTGCACGGAGAATCAAGT
CAACCATGATTGTGGAAGTTTAGTCAACAAAACTTGTGCTAGCGTCAAGA
TGATTCGCAACTTGGAGAAAGTATATCAAAAAGAATGTACCTTGATTGAT
CGCTGTACGAAAGAAGCTTATTGTGGAAGTGATACACAAAATTGCGAGAT
TTCATGCTGTCAGACCGACCATTGCACTTCAAACGCAATCCAAAACGGAT
TCAATATGTTGCTTGTTACCATGGCTACAGTTTTCTCCGCGTGGAAActg
tttcaattttgaatgaatctttttatcaaagttttAGTTGTTGGTACTGT
TTTCATTCCATTCGtATCATCCCTAATCTGTCCGAAATGCAACAGTGCAA
CGTCCTGGTCACACTGCACGGAGAATCAAGTCAACCATGATTGTGGAAGT
TTAGTCAACAAAACTTGTGCTAGCGTCAAGATGATTCGCAACTTGGAGAA
AGTATATCAAAAAGAATGTACCTTGATTGATCGCTGTACGAAAGAAGCTT
ATTGTGGAAGTGATACACAAAATTGCGAGATTTCATGCTGTCAGACCGAC
CATTGCACTTCAAACGCAATCCAAAACGGATTCAATATGTTGCTTGTTAC
CATGGCTACAGTTTTCTCCGCGTGGAAActgtttcaattttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066124-exon-scaffold_451-1491911889:162842..162976 | TCONS_00066124-exon-scaffold_451-1491911889:162842..162976 | Clytia hemisphaerica | exon |
| TCONS_00066124-exon-scaffold_451-1510915933:162842..162976 | TCONS_00066124-exon-scaffold_451-1510915933:162842..162976 | Clytia hemisphaerica | exon |
| TCONS_00066124-exon-scaffold_451-1575043694:162842..162976 | TCONS_00066124-exon-scaffold_451-1575043694:162842..162976 | Clytia hemisphaerica | exon |
| TCONS_00066124-exon-scaffold_451-1491911889:163231..163445 | TCONS_00066124-exon-scaffold_451-1491911889:163231..163445 | Clytia hemisphaerica | exon |
| TCONS_00066124-exon-scaffold_451-1510915933:163231..163445 | TCONS_00066124-exon-scaffold_451-1510915933:163231..163445 | Clytia hemisphaerica | exon |
| TCONS_00066124-exon-scaffold_451-1575043694:163231..163445 | TCONS_00066124-exon-scaffold_451-1575043694:163231..163445 | Clytia hemisphaerica | exon |
| TCONS_00066124-exon-scaffold_451-1491911889:164452..165416 | TCONS_00066124-exon-scaffold_451-1491911889:164452..165416 | Clytia hemisphaerica | exon |
| TCONS_00066124-exon-scaffold_451-1510915933:164452..165416 | TCONS_00066124-exon-scaffold_451-1510915933:164452..165416 | Clytia hemisphaerica | exon |
| TCONS_00066124-exon-scaffold_451-1575043694:164452..165416 | TCONS_00066124-exon-scaffold_451-1575043694:164452..165416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:162842..165416 + |
Blast
The following BLAST results are available for this feature:
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