TCONS_00066120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066120
Unique NameTCONS_00066120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066120 ID=TCONS_00066120|Name=TCONS_00066120|organism=Clytia hemisphaerica|type=transcript|length=575bp
tttttttatattgatcAATGTTTGTGCTACGAATTTGACAAttataatta
ttaaaattttacatttttctttcaatttttttaattaccaTATGGAAGTC
CAGGTAAGGCTTAGTTCCAGCCcaggatatttttttcattcatttttaaa
aatatccaGGAACTCCAGGTAAGGCTCAGTTCCAGCCCAGCTTATTTCtt
cattgatttaaaaaaatgttctttattaaaacttttcaaatacaTACTCT
TTCTTCGTtagctacacattttttttataagtaccGAGTTGGACATTCAA
ACGATCACTGACAGAGTCAAGGGTATAAGTGCTTGGATATACAGAACCTT
CAAGTCCAGAGATAAATCAGTAATGATCACTCTTTGAAAGACATTGGTAC
TTCAACATCTGGTATACTGCTCCCAGCTATAGTCTCCTACAAAGCGACCC
CTGATGCAAGAACTGGAGTATCTGCAAAAATCCTTTATAAAAGGGATCCA
ACTTCCACCCAATTTGAATtattgggagaagctcaaaCACCTCAATATGT
ACACTCTCGAGAGAAGAAGCGAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_450:239153..239727

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066120 ID=TCONS_00066120|Name=TCONS_00066120|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at scaffold_450:239153..239727 (Clytia hemisphaerica)
GTTTCGCTTCTTCTCTCGAGAGTGTACATATTGAGGTGtttgagcttctc
ccaataATTCAAATTGGGTGGAAGTTGGATCCCTTTTATAAAGGATTTTT
GCAGATACTCCAGTTCTTGCATCAGGGGTCGCTTTGTAGGAGACTATAGC
TGGGAGCAGTATACCAGATGTTGAAGTACCAATGTCTTTCAAAGAGTGAT
CATTACTGATTTATCTCTGGACTTGAAGGTTCTGTATATCCAAGCACTTA
TACCCTTGACTCTGTCAGTGATCGTTTGAATGTCCAACTCggtacttata
aaaaaaatgtgtagctaACGAAGAAAGAGTAtgtatttgaaaagttttaa
taaagaacatttttttaaatcaatgaaGAAATAAGCTGGGCTGGAACTGA
GCCTTACCTGGAGTTCCtggatatttttaaaaatgaatgaaaaaaatatc
ctgGGCTGGAACTAAGCCTTACCTGGACTTCCATAtggtaattaaaaaaa
ttgaaagaaaaatgtaaaattttaataattataaTTGTCAAATTCGTAGC
ACAAACATTgatcaatataaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041395XLOC_041395Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066120-exon-scaffold_450-1491911889:239153..239727TCONS_00066120-exon-scaffold_450-1491911889:239153..239727Clytia hemisphaericaexon
TCONS_00066120-exon-scaffold_450-1510915933:239153..239727TCONS_00066120-exon-scaffold_450-1510915933:239153..239727Clytia hemisphaericaexon
TCONS_00066120-exon-scaffold_450-1575043694:239153..239727TCONS_00066120-exon-scaffold_450-1575043694:239153..239727Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_450supercontigscaffold_450:239153..239727 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120318	0.126399	0	0.271712	5.5488	3.98043	6.79782	6.64245	1.23507	3.66259	1.33921	3.65905	0	0	0	0.0847298	0.298624	0	0	0	0	0.206371	0	0	0.157558	0.158487	0	0.194294	0.141489	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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