TCONS_00066119 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066119
Unique NameTCONS_00066119
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066119 ID=TCONS_00066119|Name=TCONS_00066119|organism=Clytia hemisphaerica|type=transcript|length=366bp
AATGATTTTTGTAAATTATGTTTGAATTAGTGTTAATATTTATGTGGGGA
CGCCAGTTAAATAATTTTTGTGTCTATTCATTAAGTGACAAAttgtttta
ttgttaaaaatttaatttggatTGTTAAATTGCAACAGATGTGTTTCACT
TGATAAGGGTGGTTCACGGTCAATTCAAGGACTGAGCTAACCCAGTTgga
acaacgttttttcgacgtttatttaacgttcacaacgtcaatataacgtt
agatgaacgtcgaaacaacgttgtgtgtcagctgggaaatTGATAGACAC
TGGGGATATACTGAGGACAGCTAGATTACTATGGGTGgactaaattgaaa
aaaaaatgaatttgcg
Run BLAST on NCBI

transcript from alignment at scaffold_450:217802..218167

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066119 ID=TCONS_00066119|Name=TCONS_00066119|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at scaffold_450:217802..218167 (Clytia hemisphaerica)
cgcaaattcatttttttttcaatttagtcCACCCATAGTAATCTAGCTGT
CCTCAGTATATCCCCAGTGTCTATCAatttcccagctgacacacaacgtt
gtttcgacgttcatctaacgttatattgacgttgtgaacgttaaataaac
gtcgaaaaaacgttgttccAACTGGGTTAGCTCAGTCCTTGAATTGACCG
TGAACCACCCTTATCAAGTGAAACACATCTGTTGCAATTTAACAatccaa
attaaatttttaacaataaaacaaTTTGTCACTTAATGAATAGACACAAA
AATTATTTAACTGGCGTCCCCACATAAATATTAACACTAATTCAAACATA
ATTTACAAAAATCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041394XLOC_041394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066119-exon-scaffold_450-1491911889:217802..218167TCONS_00066119-exon-scaffold_450-1491911889:217802..218167Clytia hemisphaericaexon
TCONS_00066119-exon-scaffold_450-1510915933:217802..218167TCONS_00066119-exon-scaffold_450-1510915933:217802..218167Clytia hemisphaericaexon
TCONS_00066119-exon-scaffold_450-1575043694:217802..218167TCONS_00066119-exon-scaffold_450-1575043694:217802..218167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_450supercontigscaffold_450:217802..218167 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35584	0.661077	1.12786	0.514742	0	0	1.42199	0.54397	1.33296	2.83864	1.1447	1.05348	1.05201	0.31215	0.128315	0	0.678548	0.347745	0	0.251367	0.218483	0.788661	1.03638	1.17778	0.970468	2.1653	0.309854	0.330684	1.25406	0.719156
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top