TCONS_00066117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066117
Unique NameTCONS_00066117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066117 ID=TCONS_00066117|Name=TCONS_00066117|organism=Clytia hemisphaerica|type=transcript|length=570bp
GATTTATATTATATCGATTGGCTTTACTTTGGAATATCTGCTTTATGTTT
TGGTGGCTcagcaaattttttcaatgcaaaatcaagtattgctttaaaac
gcatgTGCAAAAAGAATATGGCTGCATCAACTCACCAACACTTGCAAAGA
CACCGAAAAGCAGTCACCCGGCTATGCTTGATGTCTATTGTTACTTTTGT
ATGTTACGCACCAAATATACAATACCAGCTGTACTCAGCTGTGAGAGTTT
TGACCTCAAAGACATCAATATATCATATCTTTAAAGCTACTTTAACTCTG
GACATACTTTATGCACCAATTCTTCTATGCCCAGCCTTGAATTCATTAGG
TTACGTTTTTTGGGACGGTGAGATATTGAAATATTATAAGactgttttga
aaagaaaacgcTCTGAGTAAAGAAATggaatcaaaatttcaattggATGG
AGTCATTCGTGTTTTGATGGTACaagcaatgaagtataagcccgaagggc
tagaagtcaatctccttggtaggatttgaagccaacaaatcctaccaaag
ttgcgcggccttgagcggct
Run BLAST on NCBI

protein sequence of TCONS_00066117-protein

>TCONS_00066117-protein ID=TCONS_00066117-protein|Name=TCONS_00066117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
DLYYIDWLYFGISALCFGGSANFFNAKSSIALKRMCKKNMAASTHQHLQR
HRKAVTRLCLMSIVTFVCYAPNIQYQLYSAVRVLTSKTSIYHIFKATLTL
DILYAPILLCPALNSLGYVFWDGEILKYYKTVLKRKRSE
Run BLAST on NCBI

transcript from alignment at scaffold_450:153544..154113

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066117 ID=TCONS_00066117|Name=TCONS_00066117|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at scaffold_450:153544..154113 (Clytia hemisphaerica)
agccgctcaaggccgcgcaactttggtaggatttgttggcttcaaatcct
accaaggagattgacttctagcccttcgggcttatacttcattgcttGTA
CCATCAAAACACGAATGACTCCATccaattgaaattttgattccATTTCT
TTACTCAGAgcgttttcttttcaaaacagtCTTATAATATTTCAATATCT
CACCGTCCCAAAAAACGTAACCTAATGAATTCAAGGCTGGGCATAGAAGA
ATTGGTGCATAAAGTATGTCCAGAGTTAAAGTAGCTTTAAAGATATGATA
TATTGATGTCTTTGAGGTCAAAACTCTCACAGCTGAGTACAGCTGGTATT
GTATATTTGGTGCGTAACATACAAAAGTAACAATAGACATCAAGCATAGC
CGGGTGACTGCTTTTCGGTGTCTTTGCAAGTGTTGGTGAGTTGATGCAGC
CATATTCTTTTTGCAcatgcgttttaaagcaatacttgattttgcattga
aaaaatttgctgAGCCACCAAAACATAAAGCAGATATTCCAAAGTAAAGC
CAATCGATATAATATAAATC

Coding sequence (CDS) from alignment at scaffold_450:153544..154113

>TCONS_00066117 ID=TCONS_00066117|Name=TCONS_00066117|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_450:153544..154113 (Clytia hemisphaerica)
TTACTCAGAgcgttttcttttcaaaacagtCTTATAATATTTCAATATCT
CACCGTCCCAAAAAACGTAACCTAATGAATTCAAGGCTGGGCATAGAAGA
ATTGGTGCATAAAGTATGTCCAGAGTTAAAGTAGCTTTAAAGATATGATA
TATTGATGTCTTTGAGGTCAAAACTCTCACAGCTGAGTACAGCTGGTATT
GTATATTTGGTGCGTAACATACAAAAGTAACAATAGACATCAAGCATAGC
CGGGTGACTGCTTTTCGGTGTCTTTGCAAGTGTTGGTGAGTTGATGCAGC
CATATTCTTTTTGCAcatgcgttttaaagcaatacttgattttgcattga
aaaaatttgctgAGCCACCAAAACATAAAGCAGATATTCCAAAGTAAAGC
CAATCGATATAATATAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041392XLOC_041392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066117-exon-scaffold_450-1491911889:153544..154113TCONS_00066117-exon-scaffold_450-1491911889:153544..154113Clytia hemisphaericaexon
TCONS_00066117-exon-scaffold_450-1510915933:153544..154113TCONS_00066117-exon-scaffold_450-1510915933:153544..154113Clytia hemisphaericaexon
TCONS_00066117-exon-scaffold_450-1575043694:153544..154113TCONS_00066117-exon-scaffold_450-1575043694:153544..154113Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066117-proteinTCONS_00066117-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_450supercontigscaffold_450:153544..154113 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.364735	0.107365	0.26565	0	0	0	0.132124	0.123972	0.441941	0.515828	0.254887	0.227853	0.984169	0.429026	0.35482	0.318451	0	0.100969	2.01264	2.04114	0.339699	0.350068	0.129362	0.229778	0.445896	0.0973788	0.3435	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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