TCONS_00066116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066116
Unique NameTCONS_00066116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066116 ID=TCONS_00066116|Name=TCONS_00066116|organism=Clytia hemisphaerica|type=transcript|length=783bp
GCTGTTACTGCTACAACGCAAAAAGATCTTTTTGTCAATTCATATTTTGT
GCATGTAAAATACAAGATATATTGTACTCTTTTTAACCAATCAGATTGCA
GACATTTTTTGGATTGCCAATAAAAAGAGATGACAGCATCCTAGGTCCAA
GCAAGCCAAGCATCCTGATGTCTGGTAAAGAAAGCATCTAAACATGCGCC
ATCCACCGAATACAATAAATAGAATCATCTTTGAACCGTATAATATTTGA
GCTGTACCAAGCACAGTTGATGTTACATCAACGAAAGTTGAAAGTAAACT
AACTTTATTAAGATGTTGCGACGGCTATTTATACAAAGAAATGTGCCTTA
ATACAAAGCTGATATGATTAATTAACACACAGTTTCGTCAATCCTATAAT
AAGTTTGTCATTACTGTTGTCAAGGGCGACAAAAAATATTGGCTTTATAT
GTTATGACTATGCTGTAAATTTAGCTTAGCTTTCCGTCTTTTCTTGTATG
TTTCAAGCAAcatcttttaactttttttctgcaaattacTCCGTGCGGGG
GATGGTATTTAATTTAGTTATACGCCTActagatttgacgtcaaaattga
GCTAACGCCTATGCTATAATTGCTTTAAGTAGCTCGGTGAAGTGTGCATG
CAATCAACAATGAATGGTTTAAGGTGTGACTGTATTGGTTTTTAGGCTTT
GAATTGGATATCATTTGAAACTATATTTTTAGATTAGACTTTCGACGTGT
GAGGTCCATTTTTAATTATGGTCAAGAATACGA
Run BLAST on NCBI

transcript from alignment at scaffold_450:102691..103473

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066116 ID=TCONS_00066116|Name=TCONS_00066116|organism=Clytia hemisphaerica|type=transcript|length=783bp|location=Sequence derived from alignment at scaffold_450:102691..103473 (Clytia hemisphaerica)
TCGTATTCTTGACCATAATTAAAAATGGACCTCACACGTCGAAAGTCTAA
TCTAAAAATATAGTTTCAAATGATATCCAATTCAAAGCCTAAAAACCAAT
ACAGTCACACCTTAAACCATTCATTGTTGATTGCATGCACACTTCACCGA
GCTACTTAAAGCAATTATAGCATAGGCGTTAGCtcaattttgacgtcaaa
tctagTAGGCGTATAACTAAATTAAATACCATCCCCCGCACGGAgtaatt
tgcagaaaaaaagttaaaagatgTTGCTTGAAACATACAAGAAAAGACGG
AAAGCTAAGCTAAATTTACAGCATAGTCATAACATATAAAGCCAATATTT
TTTGTCGCCCTTGACAACAGTAATGACAAACTTATTATAGGATTGACGAA
ACTGTGTGTTAATTAATCATATCAGCTTTGTATTAAGGCACATTTCTTTG
TATAAATAGCCGTCGCAACATCTTAATAAAGTTAGTTTACTTTCAACTTT
CGTTGATGTAACATCAACTGTGCTTGGTACAGCTCAAATATTATACGGTT
CAAAGATGATTCTATTTATTGTATTCGGTGGATGGCGCATGTTTAGATGC
TTTCTTTACCAGACATCAGGATGCTTGGCTTGCTTGGACCTAGGATGCTG
TCATCTCTTTTTATTGGCAATCCAAAAAATGTCTGCAATCTGATTGGTTA
AAAAGAGTACAATATATCTTGTATTTTACATGCACAAAATATGAATTGAC
AAAAAGATCTTTTTGCGTTGTAGCAGTAACAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041391XLOC_041391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066116-exon-scaffold_450-1491911889:102691..103473TCONS_00066116-exon-scaffold_450-1491911889:102691..103473Clytia hemisphaericaexon
TCONS_00066116-exon-scaffold_450-1510915933:102691..103473TCONS_00066116-exon-scaffold_450-1510915933:102691..103473Clytia hemisphaericaexon
TCONS_00066116-exon-scaffold_450-1575043694:102691..103473TCONS_00066116-exon-scaffold_450-1575043694:102691..103473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_450supercontigscaffold_450:102691..103473 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123616	0.0602725	0.0700214	0	0	0	0	0	0.0520843	0	0	0	0.16501	0.769328	0.140386	0.037664	0	0.0475574	0.0657032	0.550571	0.0597743	0	0.141735	0.0644432	0.0663604	0	0.339004	0.452709	0	0.0698945
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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