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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066107 ID=TCONS_00066107|Name=TCONS_00066107|organism=Clytia hemisphaerica|type=transcript|length=1472bp
ACTGTAGTATATTTTGGGTATAAGGCATTTTGAAGAATGGAAAGAGAAGA
AACCCGTTCGTATAGTATCGAAAAACCACGTCACGCCAGCCTTCTAGATC
GCAACAACAATATACAACACCACGACAAATCATCCGATATCTCTCACAAC
ACAAGCGATAATGAAAACGACAGAGTCGTACGTCAGTGGTTACAAGAAAC
CGTAACCGTCGTTAAACCTTTATCCGACAAAGACGACAGGAATGAAACGT
TATGTCGGGTATGTGGCGATATATCGTCTGGTCGACACTACGGGCAATAC
ACTTGTGACGGATGTTCCGGATTTTTCATGCGGTCAGTCCGTAAGAATAT
GACGTACCGTTGTAAAGGGAATAAAAGTTGTATCGTAGATAAGAAAAGAA
GGAATCAATGTCAAGCATGTCGCTTCGAGAAATGTTTGGAAGTGAAAATG
AATAGATACGCGGTGCAGCAAGAGCGACAGCCGAACAATCACTTCAGTAT
GCAGCATCATTCATTCCATGGGCTACCACCCTACCTCTATCCAAGGTCAG
TTGGTTACTACCCTCCACCACCCCCTCCTCCACGAATTGGCCTGACCCGG
ATAGGCGGGAGCTCACTTCCCACCATGCATGATATACGGGAACGACATCG
AGAATTCAGGATCAATTACCAACACGCATCTACTTCTTCTTCCTTGAGAC
AATCACCTGGATGTGTCTCACCCCTACCTACCACTACCAAGATACAGACT
CCTGTTAGTCCTCCACCAAGGCTCATAGAGGCCACGAAAATTAAAACAGA
GGATGCAGTACCAGTTCAAGCACCAGAAAAGCTAGAAGATATAGCGGCTC
GGTTATTATATCATACAATCAAATGGGCTCGGTCAGTACCTGCCTTCACA
GAACTCTCCATTAGTGACCAAATCAGGCTGTTAGAAAACTCTTGGTCAGA
CATTTTCGTTCTATTCGCATTCCAATGGAAACTGCTTATTGATTCTGGTG
AAATTACAAAATCCATTGAAGAGAGGCTTAAAGATGATGAAAATGGTCAC
ATTCGAGATGATTTATCAGCAGAGTTGAAACACTTGCAAGAGATGGCTGG
CAAATTCCATTCATTTCATGTTTCAGAAGACGAATTCATTTACTTGAAAT
CTGTGGTATTGTTTAAACCagGTACCAGGTCTGTTGGACCCACGACACAT
TGAGAGGTGTCAAGACCGTGCTCAAATCATGCTCCGTGACCACGTGGTAG
CCTGTACACCAGAACAACCTGCAAGATTTGGTAAATTACTTCTATTATTA
CCAGAGGTGAAACGAATCACACCGAAGACCATTGAAGAAATATTATACCA
ACAGAATCTAGGGACTTTCTCATTTGACACGCTCCTGGCTGATCTATTCA
AACCATAATTCATATAATTTATCTATTGGTAGCAGACTTGATGATCAAAA
AGTGTAAATATTGTAATTAGTG Run BLAST on NCBI transcript from alignment at scaffold_450:57560..63763- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066107 ID=TCONS_00066107|Name=TCONS_00066107|organism=Clytia hemisphaerica|type=transcript|length=6204bp|location=Sequence derived from alignment at scaffold_450:57560..63763- (Clytia hemisphaerica)
ACTGTAGTATATTTTGGGTATAAGGCATTTTGAAGAATGGAAAGAGAAGG
TTAGTTGATTACAACTCTTGCTTCACTGATAAATTGGTGGTCATTATCTG
GTAATTTTTATTAAACCCCTGTCTTACTGACTTGATCACTATCTTACTGA
CTTGACGGTGGTCAGTTCATTACACCTCTGTCTCAGTACCCCGGTGGCAA
TGTCTTTAGTACACCTCTACATCTAGACTATGCTATAGTCTAAGTATAGT
CTAAGACCAATCAAAGCCGAAGAAAATTTGCTGGAAGGAGTTTACAGTAG
TTACAGTAGGTAGAGTTTTCCAGTGTTCTTCGAAAGGCGTAGTAGTGTAG
TGGTTATCAACCTTGATTTCCGTCTGGGAGGTCAGGGTTCGATTCTCACT
CGATGCTATAATTCACTTGGCAAGTGAATGTACCTTCGCCCGGGTCGATC
CATGCCTTCTGAGGGGAACTGGGTACCATCACTCTGATAAAAGAGTATGG
AGGAGTTTGTCAGGCATTGCACGTGGTGTGGTGACGATACTCACAGGTTC
AAAACCTGCGAAGATGTATGTACTCCCGTGTAGTTCAAATATCATCGTCT
AACACCAATAACTTTGTCGCGTCGCGCAGGGTTAGCAGTGTCTGGTAAGC
GTGGTAATTTCCCTACCCTAGGGTAGGTATCCAGGGATAGGGCCTATTCC
GGATGATTAGGAGGGTTCAATTCTCTTTCTCTCTTCACTTCGAAACAGCT
GCTTTTTTTCCGTATACCACCATAACGATCATAAACTCTGCGCGTATACT
ATTTTCACGCCTTTACTATCACTGTAAACGGACGATAACATTGTCTACTC
GATATCCTGTCTCAGTGAAGTGACCAATTCGGATTTTAGCAGCCAATCCC
AATCGCGGAAGACGCACAATCAGTCAATAAAAACAAGCTTACACTGTCTG
CACCCCAAAAGTCGATGAATTATGTTTTCTTTCTGACGCCTCAAATAATC
ATTGGAAATACAAAAATGAGCCTAATAACACTTATTTGTCACCTAAAGAT
TCTTTCCCAATGCATAATTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
AATACTCTTTATTTGTTGAACTAGTCTTTAATCGGACTATATTGAAATCG
ATACTATTAATCGAACGAATCCGATTGTCAAACTGTTCGATTAAAGTGAC
CTATTTTAATAACGGCGATGCAATAGTATGACTTGCTGATCTGGAGCAAC
CTCGTTCTCTGCGTATTATCAGCTTATTGATGCTTACTGATAAAGCTAGA
TGTTCTCTGACGTCTATCAGTAACGTAAATAAAGCCTGGGATACACGGAG
AACGAGGTTGGATATGCAGTTTATTCAACGTGCCCTGTCTGTAAGAATAA
TTTTTAACGTTTTCTTCTCTTAAATAGAAACCCGTTCGTATAGTATCGAA
AAACCACGTCACGCCAGCCTTCTAGATCGCAACAACAATATACAACACCA
CGACAAATCATCCGATATCTCTCACAACACAAGCGATAATGAAAACGACA
GAGTCGTACGTCAGTGGTTACAAGAAACCGTAACCGTCGTTAAACCTTTA
TCCGACAAAGACGACAGGAATGAAACGTTATGTCGGGTATGTGGCGATAT
ATCGTCTGGTCGACACTACGGGCAATACACTTGTGACGGATGTTCCGGAT
TTTTCATGCGGTCAGTCCGTAAGAATATGACGTACCGTTGTAAAGGGAAT
AAAAGTTGTATCGTAGATAAGAAAAGAAGGAATCAATGTCAAGCATGTCG
CTTCGAGAAATGTTTGGAAGTGAAAATGAATAGATACGGTAGGAGATTTT
CCCATTCTACGGTTACTCCTTTTATAAAGCTCCAACTCAAGGTGCATTGA
AGAAGATGAAAGTATTTGATACCTACATACTCAATCCTTAGAAACTTAAC
CTAAAGAAGGTTCTCAATACACATTTCCAACCGTAGTCACGCGGTCAGGC
GTGTGCCACTTAATTATTTAATCATCCCCCTAAACTTGATCCAATCCTTT
TTTGACACCTTTTTCTATTGTCTATAGGTGCGAATAAAAGACTGGGACGG
TTTTAGGGTGGTAAAACGGACAAAGAAAAGCCCACGCAGCAGTTGGCGGC
TACGGTTGAAAAGGTGTATTACGTCTGCAATTTTAATTTAATGCACTTGA
AAAATACAGTTGACCCTTTCTTATTCGATCTCCAAGGGACCAAGAACTTT
TTCGAATTAGAGGAAGATTCAAATTATGAACGAATTTAACAATACTTTAA
AGCTGAGGGGACAATTTTTTCAGCTCGAATTATACAATAGAATTCGAAAT
ATAGAGGTTCGAGACTACTAAATGTACATCTTTTATTATTCGTTGAAAAT
TGAAAGTTATTCAATTATTTTGCAATGAACTTATAGCGGTGCAGCAAGAG
CGNCAATACTCTTTATTTGTTGAACTAGTCTTTAATCGGACTATATTGAA
ATCGATACTATTAATCGAACGAATCCGATTGTCAAACTGTTCGATTAAAG
TGACCTATTTTAATAACGGCGATGCAATAGTATGACTTGCTGATCTGGAG
CAACCTCGTTCTCTGCGTATTATCAGCTTATTGATGCTTACTGATAAAGC
TAGATGTTCTCTGACGTCTATCAGTAACGTAAATAAAGCCTGGGATACAC
GGAGAACGAGGTTGGATATGCAGTTTATTCAACGTGCCCTGTCTGTAAGA
ATAATTTTTAACGTTTTCTTCTCTTAAATAGAAACCCGTTCGTATAGTAT
CGAAAAACCACGTCACGCCAGCCTTCTAGATCGCAACAACAATATACAAC
ACCACGACAAATCATCCGATATCTCTCACAACACAAGCGATAATGAAAAC
GACAGAGTCGTACGTCAGTGGTTACAAGAAACCGTAACCGTCGTTAAACC
TTTATCCGACAAAGACGACAGGAATGAAACGTTATGTCGGGTATGTGGCG
ATATATCGTCTGGTCGACACTACGGGCAATACACTTGTGACGGATGTTCC
GGATTTTTCATGCGGTCAGTCCGTAAGAATATGACGTACCGTTGTAAAGG
GAATAAAAGTTGTATCGTAGATAAGAAAAGAAGGAATCAATGTCAAGCAT
GTCGATTCGAGAAATGTTTGGAAGTGAAAATGAATAGATACGGTAGGAGA
TTTTCCCATTCTACGGTTACTCCTTTTATAAAGCTCCAACTCAAGGTGCA
TTGAAGAAGATGAAAGTATTTGATACCTACATACTCAATCCTTAGAAACT
TAACCTAAAGAAGGTTCTCAATACACATTTCCAACCGTAGTCACGCGGTC
AGGCGTGTGCCACTTAATTATTTAATCATCCCCCTAAACTTTATCCAATC
CTTTTTTGACACCTTTTTCTATTGTCTATAGGTGCGAATAAAAGACTGGG
ACGGTTTTAGGGTGGTAAAACGGACAAAGAAAAGCCCACGCAGCAGTTGG
CGGCTACGGTTGAAAAGGTGTATTACGTCTGCAATTTTAATTTAATGCAC
TTGAAAAATACAGTTGACCCTTTCTTATTCGATCTCCAAGGGACCAAGAA
CTTTTTCGAATTAGAGGAAGATTCAAATTATGAACGAATTTAACAATACT
TTAAAGCTGAGGGGACAATTTTTTCAGCTCGAATTATACAATAGAATTCG
AAATATAGAGGTTCGAGACTACTAAATGTACATCTTTTATTATTCGTTGA
AAATTGAAAGTTATTCAATTATTTTGCAATGAACTTATAGCGGTGCAGCA
AGAGCGACAGCCGAACAATCACTTCAGTATGCAGCATCATTCATTCCATG
GGCTACCACCCTACCTCTATCCAAGGTCAGTTGGTTACTACCCTCCACCA
CCCCCTCCTCCACGAATTGGCCTGACCCGGATAGGCGGGAGCTCACTTCC
CACCATGCATGATATACGGGAACGACATCGAGAATTCAGGATCAATTACC
AACACGCATCTACTTCTTCTTCCTTGAGACAATCACCTGGATGTGTCTCA
CCCCTACCTACCACTACCAAGATACAGACTCCTGTTAGTCCTCCACCAAG
GCTCATAGAGGCCACGAAAATTAAAACAGAGGATGCAGTACCAGTTCAAG
CACCAGAAAAGCTAGAAGATATAGCGGCTCGGTTATTATATCATACAATC
AAATGGGCTCGGTCAGTACCTGCCTTCACAGAACTCTCCATTAGTGACCA
AATCAGGCTGTTAGAAAACTCTTGGTCAGACATTTTCGTTCTATTCGCAT
TCCAATGGAAACTGCTTATTGATTCTGGTGAAATTACAAAATCCATTGAA
GAGAGGCTTAAAGATGATGAAAATGGTCACATTCGAGATGATTTATCAGC
AGAGTTGAAACACTTGCAAGAGATGGCTGGCAAATTCCATTCATTTCATG
TTTCAGAAGACGAATTCATTTACTTGAAATCTGTGGTATTGTTTAAACCA
GGTAAAAAAAAAGGAAAGCTTTAATTTACAAAAAAAAGAACCACTAAACT
TTTAACTGAGCAGCAATTGTTCTTACTTTTTCGAGAGATTCAAAATTAAC
CAAATTCAGTGTCGATATTTTCTTTCTAGGTTTTGATCAAAATCGAACTG
TATGATTGCAGTCTGCAGTTAGTAGTCTGTTTCCTTGCATATCTGACGTT
TTAGTAGTTTGTTTATTTGCACCCTTTCATATCTGACGGTCAATAGTCAG
GCAATGGGATTACAAGAAATAATATACTGATAAACCCTTGCTATTCAAAA
AAGGGATCGAGTTAACCAGAATCAAATCACGCTAAATGTAATTTGACGTC
AACCAACCTTGTGAAACTGAAAGAAGAAAATCCTCTTGTGATCATAGTCC
GTATAAAAAACTCTGGTCTGGAAGCGTATTGTTTTAACTTTTTTCCTCTT
GGGATTGGTTTAAGATTTAATCACATGATCAAAAAGCGAGCAAAAAAACT
AATTTCTCAAACGCAAGTTCAAGTAAGAAACAATGGAAAGAAACAAAAGG
CTTCCAGACCGGGGTTTTTTATCCGAACTATGTTGTGATGTCAGGGCTTC
TATGTGAATATATTTCAACTCCCTTCAATGAACACATGCTTTCATTTTTA
GAGGTACCAGGTCTGTTGGACCCACGACACATTGAGAGGTGTCAAGACCG
TGCTCAAATCATGCTCCGTGACCACGTGGTAGCCTGTACACCAGAACAAC
CTGCAAGATTTGGTAAATTACTTCTATTATTACCAGAGGTGAAACGAATC
ACACCGAAGACCATTGAAGAAATATTATACCAACAGAATCTAGGGACTTT
CTCATTTGACACGCTCCTGGCTGATCTATTCAAACCATAATTCATATAAT
TTATCTATTGGTAGCAGACTTGATGATCAAAAAGTGTAAATATTGTAATT
AGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066107-exon-scaffold_450-1575043694:63715..63763 | TCONS_00066107-exon-scaffold_450-1575043694:63715..63763 | Clytia hemisphaerica | exon |
| TCONS_00066107-exon-scaffold_450-1575043694:61176..61586 | TCONS_00066107-exon-scaffold_450-1575043694:61176..61586 | Clytia hemisphaerica | exon |
| TCONS_00066107-exon-scaffold_450-1575043694:58513..59223 | TCONS_00066107-exon-scaffold_450-1575043694:58513..59223 | Clytia hemisphaerica | exon |
| TCONS_00066107-exon-scaffold_450-1575043694:57560..57860 | TCONS_00066107-exon-scaffold_450-1575043694:57560..57860 | Clytia hemisphaerica | exon |
| TCONS_00066107-exon-scaffold_450-1510915933:63715..63763 | TCONS_00066107-exon-scaffold_450-1510915933:63715..63763 | Clytia hemisphaerica | exon |
| TCONS_00066107-exon-scaffold_450-1510915933:61176..61586 | TCONS_00066107-exon-scaffold_450-1510915933:61176..61586 | Clytia hemisphaerica | exon |
| TCONS_00066107-exon-scaffold_450-1510915933:58513..59223 | TCONS_00066107-exon-scaffold_450-1510915933:58513..59223 | Clytia hemisphaerica | exon |
| TCONS_00066107-exon-scaffold_450-1510915933:57560..57860 | TCONS_00066107-exon-scaffold_450-1510915933:57560..57860 | Clytia hemisphaerica | exon |
| TCONS_00066107-exon-scaffold_450-1491911889:63715..63763 | TCONS_00066107-exon-scaffold_450-1491911889:63715..63763 | Clytia hemisphaerica | exon |
| TCONS_00066107-exon-scaffold_450-1491911889:61176..61586 | TCONS_00066107-exon-scaffold_450-1491911889:61176..61586 | Clytia hemisphaerica | exon |
| TCONS_00066107-exon-scaffold_450-1491911889:58513..59223 | TCONS_00066107-exon-scaffold_450-1491911889:58513..59223 | Clytia hemisphaerica | exon |
| TCONS_00066107-exon-scaffold_450-1491911889:57560..57860 | TCONS_00066107-exon-scaffold_450-1491911889:57560..57860 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_450 | supercontig | scaffold_450:57560..63763 - |
Blast
BLAST of TCONS_00066107 vs. Swiss-Prot (Human)
Match: NR2E1 (Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens GN=NR2E1 PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 3.508e-57 Identity = 109/320 (34.06%), Postives = 160/320 (50.00%), Query Frame = 1
Query: 214 KPLSDKDDRNETLCRVCGDISSGRHYGQYTCDGCSGFFMRSVRKNMTYRCK-GNK-SCIVDKKRRNQCQACRFEKCLEVKMNRYAVQQERQPNNHFSMQHHSFHGLPPYLYPRSVGYYXXXXXXXRIGLTRIGGSSLPTMHDIRERHREFRINYQHASTSSSLRQSPGCVSPLPTTTKIQTPVSPPPRLIEATKIKTEDAVPVQAPEKLEDIAARLLYHTIKWARSVPAFTELSISDQIRLLENSWSDIFVLFAFQWKLLIDSGEITKSIEERLKDDENGHIRDDLSAELKHLQEMAGKFHSFHVSEDEFIYLKSVVLFK 1167
KP + C+VCGD SSG+HYG Y CDGCSGFF RS+R+N TY CK GN+ C VDK RNQC+ACR +KCLEV MN+ AVQ ER P + V Y ++LP + + A+ S++ + T + P P + T + + A E + + AARLL+ +IKWA+SVPAF+ LS+ DQ+ LLE++W ++FVL QW + +D+ + ++ D+ + + + +E++ LQE+ +F + EF LK +V FK
Sbjct: 3 KPAGSTSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTS--------------TIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTTPERQ--------TLVSLAQPTPKYPHEVNGTPMYLYEV----ATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL-AVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFK 295 HSP 2 Score: 57.7658 bits (138), Expect = 3.508e-57 Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 2
Query: 1211 QDRAQIMLRDHVVACTPEQPARFGKLLLLLPEVKRITPKTIEEILYQQNLGTFSFDTLLADLFK 1402
QD AQ+ L ++ P QP RFGKLLLLLP ++ I+P TIEE+ +++ +G LL+D++K
Sbjct: 318 QDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYK 381
The following BLAST results are available for this feature:
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